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{{DOID
{{DOID
|id=DOID:4468
|alt_id=DOID:2617;;DOID:4940
|name=clear cell adenocarcinoma
|namespace=disease_ontology
|def="An adenocarcinoma that derives_from epithelial cells which have clear cytoplasm." [url:http://www.pathconsultddx.com/pathCon/diagnosis?pii=S1559-8675%2806%2970166-8]
|xref=MSH:D008649;;NCI:C4072;;SNOMEDCT_2010_1_31:189633003;;SNOMEDCT_2010_1_31:189861007;;SNOMEDCT_2010_1_31:2221008;;SNOMEDCT_2010_1_31:30546008;;SNOMEDCT_2010_1_31:80727009;;UMLS_CUI:C0025490;;UMLS_CUI:C0206681;;UMLS_CUI:C0334322
|is_a=DOID:299
|synonym="Clear cell adenocarcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:30546008];;"Clear cell adenocarcinoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189633003];;"malignant Mesonephroma" EXACT [NCI2004_11_17:C4072];;"Mesonephroid Clear cell carcinoma" EXACT [NCI2004_11_17:C3766];;"mesonephroma" EXACT [];;"Mesonephroma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189861007];;"Mesonephroma, malignant (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:2221008];;"Water-Clear cell adenocarcinoma" EXACT [NCI2004_11_17:C4156];;"Water-clear cell adenocarcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:80727009];;"Water-clear cell carcinoma" EXACT [];;"Wolffian duct neoplasm" EXACT [NCI2004_11_17:C6782]
|comment=
|comment=
|alt_id=DOID:2617;;DOID:4940
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An adenocarcinoma that derives_from epithelial cells which have clear cytoplasm." [url:http://www.pathconsultddx.com/pathCon/diagnosis?pii
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:4468
|is_a=DOID:299
|is_obsolete=
|located_in=
|located_in=
|name=clear cell adenocarcinoma
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="Clear cell adenocarcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:30546008];;"Clear cell adenocarcinoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189633003];;"malignant Mesonephroma" EXACT [NCI2004_11_17:C4072];;"Mesonephroid Clear cell carcinoma" EXACT [NCI2004_11_17:C3766];;"mesonephroma" EXACT [];;"Mesonephroma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189861007];;"Mesonephroma, malignant (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:2221008];;"Water-Clear cell adenocarcinoma" EXACT [NCI2004_11_17:C4156];;"Water-clear cell adenocarcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:80727009];;"Water-clear cell carcinoma" EXACT [];;"Wolffian duct neoplasm" EXACT [NCI2004_11_17:C6782]
|union_of=
|xref=MSH:D008649;;NCI:C4072;;SNOMEDCT_2010_1_31:189633003;;SNOMEDCT_2010_1_31:189861007;;SNOMEDCT_2010_1_31:2221008;;SNOMEDCT_2010_1_31:30546008;;SNOMEDCT_2010_1_31:80727009;;UMLS_CUI:C0025490;;UMLS_CUI:C0206681;;UMLS_CUI:C0334322
}}
}}

Latest revision as of 16:51, 12 September 2014

Name:clear cell adenocarcinoma
Namespace:FANTOM
Definition:"An adenocarcinoma that derives_from epithelial cells which have clear cytoplasm." [url:http://www.pathconsultddx.com/pathCon/diagnosis?pii
Xrefs:
links:

MSH:D008649
NCI:C4072
SNOMEDCT_2010_1_31:189633003
SNOMEDCT_2010_1_31:189861007
SNOMEDCT_2010_1_31:2221008
SNOMEDCT_2010_1_31:30546008
SNOMEDCT_2010_1_31:80727009
UMLS_CUI:C0025490
UMLS_CUI:C0206681

UMLS_CUI:C0334322
Synonyms: "Clear cell adenocarcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:30546008]
"Clear cell adenocarcinoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189633003]
"malignant Mesonephroma" EXACT [NCI2004_11_17:C4072]
"Mesonephroid Clear cell carcinoma" EXACT [NCI2004_11_17:C3766]
"mesonephroma" EXACT []
"Mesonephroma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189861007]
"Mesonephroma, malignant (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:2221008]
"Water-Clear cell adenocarcinoma" EXACT [NCI2004_11_17:C4156]
"Water-clear cell adenocarcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:80727009]
"Water-clear cell carcinoma" EXACT []
"Wolffian duct neoplasm" EXACT [NCI2004_11_17:C6782]
Alt_id: DOID:2617
DOID:4940

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:299(adenocarcinoma)



Children
NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:4468 (clear cell adenocarcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.61e-131FFCP PHASE1:Hg19::chr6:18496965..18496969,+#_7976fcc152a2998c0d4f92714c0b1783p@chr6:18496965..18496969, +
4.61e-131FFCP PHASE2:Hg19::chr6:18496965..18496969,+#_7976fcc152a2998c0d4f92714c0b1783p@chr6:18496965..18496969, +
5.68e-99FFCP PHASE2:Hg19::chr15:58820851..58820862,+#_5fc3af795c76fe684feaf7dce386af63p@chr15:58820851..58820862, +
5.68e-99FFCP PHASE1:Hg19::chr15:58820851..58820862,+#_5fc3af795c76fe684feaf7dce386af63p@chr15:58820851..58820862, +
1.55e-98FFCP PHASE1:Hg19::chr14:40235844..40235853,+#_98e719283576dce378c307b200d1d60fp@chr14:40235844..40235853, +
1.55e-98FFCP PHASE1:Hg19::chr16:34989823..34989828,+#_98e719283576dce378c307b200d1d60fp@chr16:34989823..34989828, +
1.55e-98FFCP PHASE2:Hg19::chr6:18497065..18497066,+#_98e719283576dce378c307b200d1d60fp@chr6:18497065..18497066, +
1.55e-98FFCP PHASE1:Hg19::chr16:34980045..34980053,+#_98e719283576dce378c307b200d1d60fp@chr16:34980045..34980053, +
1.55e-98FFCP PHASE2:Hg19::chr7:76911322..76911329,+#_98e719283576dce378c307b200d1d60fp15@CCDC146
1.55e-98FFCP PHASE1:Hg19::chr4:143071473..143071483,-#_98e719283576dce378c307b200d1d60fp@chr4:143071473..143071483, -
1.55e-98FFCP PHASE2:Hg19::chr14:40235844..40235853,+#_98e719283576dce378c307b200d1d60fp@chr14:40235844..40235853, +
1.55e-98FFCP PHASE2:Hg19::chr15:43580426..43580430,-#_98e719283576dce378c307b200d1d60fp@chr15:43580426..43580430, -
1.55e-98FFCP PHASE2:Hg19::chr4:143071426..143071431,-#_98e719283576dce378c307b200d1d60fp@chr4:143071426..143071431, -
1.55e-98FFCP PHASE2:Hg19::chr11:90481311..90481354,+#_98e719283576dce378c307b200d1d60fp@chr11:90481311..90481354, +
1.55e-98FFCP PHASE1:Hg19::chr20:18211087..18211094,-#_98e719283576dce378c307b200d1d60fp@chr20:18211087..18211094, -
1.55e-98FFCP PHASE1:Hg19::chr11:90481311..90481354,+#_98e719283576dce378c307b200d1d60fp@chr11:90481311..90481354, +
1.55e-98FFCP PHASE1:Hg19::chr7:76911218..76911223,+#_98e719283576dce378c307b200d1d60fp17@CCDC146
1.55e-98FFCP PHASE2:Hg19::chr16:34989813..34989818,+#_98e719283576dce378c307b200d1d60fp@chr16:34989813..34989818, +
1.55e-98FFCP PHASE2:Hg19::chr4:143071473..143071483,-#_98e719283576dce378c307b200d1d60fp@chr4:143071473..143071483, -
1.55e-98FFCP PHASE1:Hg19::chr21:47565715..47565733,+#_98e719283576dce378c307b200d1d60fp@chr21:47565715..47565733, +
1.55e-98FFCP PHASE1:Hg19::chr20:18211099..18211106,-#_98e719283576dce378c307b200d1d60fp@chr20:18211099..18211106, -
1.55e-98FFCP PHASE1:Hg19::chr7:76911238..76911250,+#_98e719283576dce378c307b200d1d60fp9@CCDC146
1.55e-98FFCP PHASE2:Hg19::chr16:34989823..34989828,+#_98e719283576dce378c307b200d1d60fp@chr16:34989823..34989828, +
1.55e-98FFCP PHASE2:Hg19::chr16:34980045..34980053,+#_98e719283576dce378c307b200d1d60fp@chr16:34980045..34980053, +
1.55e-98FFCP PHASE2:Hg19::chr20:18211087..18211094,-#_98e719283576dce378c307b200d1d60fp@chr20:18211087..18211094, -
1.55e-98FFCP PHASE1:Hg19::chr15:43580426..43580430,-#_98e719283576dce378c307b200d1d60fp@chr15:43580426..43580430, -
1.55e-98FFCP PHASE2:Hg19::chr7:76911218..76911223,+#_98e719283576dce378c307b200d1d60fp17@CCDC146
1.55e-98FFCP PHASE2:Hg19::chr21:47565715..47565733,+#_98e719283576dce378c307b200d1d60fp@chr21:47565715..47565733, +
1.55e-98FFCP PHASE1:Hg19::chr7:76911322..76911329,+#_98e719283576dce378c307b200d1d60fp15@CCDC146
1.55e-98FFCP PHASE1:Hg19::chr12:88064272..88064283,-#_98e719283576dce378c307b200d1d60fp@chr12:88064272..88064283, -
1.55e-98FFCP PHASE1:Hg19::chr6:18497065..18497066,+#_98e719283576dce378c307b200d1d60fp@chr6:18497065..18497066, +
1.55e-98FFCP PHASE2:Hg19::chr20:18211099..18211106,-#_98e719283576dce378c307b200d1d60fp@chr20:18211099..18211106, -
1.55e-98FFCP PHASE1:Hg19::chr12:72425091..72425096,+#_98e719283576dce378c307b200d1d60fp7@TPH2
1.55e-98FFCP PHASE1:Hg19::chr16:34989813..34989818,+#_98e719283576dce378c307b200d1d60fp@chr16:34989813..34989818, +
1.55e-98FFCP PHASE2:Hg19::chr7:76911238..76911250,+#_98e719283576dce378c307b200d1d60fp9@CCDC146
1.55e-98FFCP PHASE2:Hg19::chr12:88064272..88064283,-#_98e719283576dce378c307b200d1d60fp@chr12:88064272..88064283, -
1.55e-98FFCP PHASE1:Hg19::chr4:143071426..143071431,-#_98e719283576dce378c307b200d1d60fp@chr4:143071426..143071431, -
1.55e-98FFCP PHASE2:Hg19::chr12:72425091..72425096,+#_98e719283576dce378c307b200d1d60fp7@TPH2
1.05e-79FFCP PHASE1:Hg19::chr6:18497083..18497107,+#_220a746af97e4e6686f2d86ba8b82847p@chr6:18497083..18497107, +
1.05e-79FFCP PHASE2:Hg19::chr6:18497083..18497107,+#_220a746af97e4e6686f2d86ba8b82847p@chr6:18497083..18497107, +
7.41e-67FFCP PHASE1:Hg19::chr15:58790937..58790951,-#_bbeec0a4b44e2673e4989535db71e217p1@ENST00000561083, p1@uc002afb.1
7.41e-67FFCP PHASE2:Hg19::chr15:58790937..58790951,-#_bbeec0a4b44e2673e4989535db71e217p1@ENST00000561083, p1@uc002afb.1
2.84e-66FFCP PHASE2:Hg19::chr16:34980938..34980966,+#_bc09b9b95a61251642df2a6eaab15b81p1@FLJ26245
2.84e-66FFCP PHASE1:Hg19::chr16:34980881..34980902,+#_bc09b9b95a61251642df2a6eaab15b81p1@ENST00000516136
2.84e-66FFCP PHASE1:Hg19::chr16:34980938..34980966,+#_bc09b9b95a61251642df2a6eaab15b81p1@FLJ26245
2.84e-66FFCP PHASE2:Hg19::chr16:34980881..34980902,+#_bc09b9b95a61251642df2a6eaab15b81p1@ENST00000516136
1.51e-57FFCP PHASE1:Hg19::chr15:67426669..67426682,+#_f89f7282476374fdf0aab788d85ac4cfp@chr15:67426669..67426682, +
1.51e-57FFCP PHASE2:Hg19::chr15:67426669..67426682,+#_f89f7282476374fdf0aab788d85ac4cfp@chr15:67426669..67426682, +
3.58e-57FFCP PHASE2:Hg19::chr16:34980911..34980930,+#_521a80f55c9a77b54bb13463cba673a8p2@FLJ26245
3.58e-57FFCP PHASE1:Hg19::chr16:34980911..34980930,+#_521a80f55c9a77b54bb13463cba673a8p2@FLJ26245
2.74e-50FFCP PHASE2:Hg19::chr6:136426009..136426018,+#_6290846747f7e4a7a2bdedecf534c5c8p@chr6:136426009..136426018, +
2.74e-50FFCP PHASE1:Hg19::chr7:76955582..76955591,-#_6290846747f7e4a7a2bdedecf534c5c8p20@PION
2.74e-50FFCP PHASE2:Hg19::chr7:27164806..27164816,-#_6290846747f7e4a7a2bdedecf534c5c8p@chr7:27164806..27164816, -
2.74e-50FFCP PHASE2:Hg19::chr16:34989787..34989796,+#_6290846747f7e4a7a2bdedecf534c5c8p@chr16:34989787..34989796, +
2.74e-50FFCP PHASE1:Hg19::chr12:39347117..39347129,-#_6290846747f7e4a7a2bdedecf534c5c8p@chr12:39347117..39347129, -
2.74e-50FFCP PHASE2:Hg19::chr6:25832300..25832307,-#_6290846747f7e4a7a2bdedecf534c5c8p3@SLC17A1
2.74e-50FFCP PHASE1:Hg19::chr5:156482284..156482291,-#_6290846747f7e4a7a2bdedecf534c5c8p@chr5:156482284..156482291, -
2.74e-50FFCP PHASE2:Hg19::chr8:133566176..133566183,+#_6290846747f7e4a7a2bdedecf534c5c8p@chr8:133566176..133566183, +
2.74e-50FFCP PHASE2:Hg19::chr12:39347117..39347129,-#_6290846747f7e4a7a2bdedecf534c5c8p@chr12:39347117..39347129, -
2.74e-50FFCP PHASE1:Hg19::chr3:70034650..70034690,+#_6290846747f7e4a7a2bdedecf534c5c8p@chr3:70034650..70034690, +
2.74e-50FFCP PHASE1:Hg19::chr6:136426000..136426008,+#_6290846747f7e4a7a2bdedecf534c5c8p@chr6:136426000..136426008, +
2.74e-50FFCP PHASE2:Hg19::chr7:76955582..76955591,-#_6290846747f7e4a7a2bdedecf534c5c8p20@PION
2.74e-50FFCP PHASE1:Hg19::chr8:56313461..56313466,-#_6290846747f7e4a7a2bdedecf534c5c8p@chr8:56313461..56313466, -
2.74e-50FFCP PHASE2:Hg19::chr5:156482284..156482291,-#_6290846747f7e4a7a2bdedecf534c5c8p@chr5:156482284..156482291, -
2.74e-50FFCP PHASE1:Hg19::chr6:136426009..136426018,+#_6290846747f7e4a7a2bdedecf534c5c8p@chr6:136426009..136426018, +
2.74e-50FFCP PHASE2:Hg19::chr3:70034650..70034690,+#_6290846747f7e4a7a2bdedecf534c5c8p@chr3:70034650..70034690, +
2.74e-50FFCP PHASE1:Hg19::chr12:72425054..72425060,+#_6290846747f7e4a7a2bdedecf534c5c8p5@TPH2
2.74e-50FFCP PHASE1:Hg19::chr16:34989787..34989796,+#_6290846747f7e4a7a2bdedecf534c5c8p@chr16:34989787..34989796, +
2.74e-50FFCP PHASE2:Hg19::chr12:72425054..72425060,+#_6290846747f7e4a7a2bdedecf534c5c8p5@TPH2
2.74e-50FFCP PHASE1:Hg19::chr12:44976731..44976736,+#_6290846747f7e4a7a2bdedecf534c5c8p@chr12:44976731..44976736, +
2.74e-50FFCP PHASE2:Hg19::chr6:136426000..136426008,+#_6290846747f7e4a7a2bdedecf534c5c8p@chr6:136426000..136426008, +
2.74e-50FFCP PHASE1:Hg19::chr7:27164806..27164816,-#_6290846747f7e4a7a2bdedecf534c5c8p@chr7:27164806..27164816, -
2.74e-50FFCP PHASE1:Hg19::chr8:133566176..133566183,+#_6290846747f7e4a7a2bdedecf534c5c8p@chr8:133566176..133566183, +
2.74e-50FFCP PHASE1:Hg19::chr6:25832300..25832307,-#_6290846747f7e4a7a2bdedecf534c5c8p3@SLC17A1
2.74e-50FFCP PHASE2:Hg19::chr12:44976731..44976736,+#_6290846747f7e4a7a2bdedecf534c5c8p@chr12:44976731..44976736, +
2.74e-50FFCP PHASE2:Hg19::chr8:56313461..56313466,-#_6290846747f7e4a7a2bdedecf534c5c8p@chr8:56313461..56313466, -
4.0e-50FFCP PHASE1:Hg19::chr5:156482498..156482512,-#_06ab789685fde087a73afb5233002b71p@chr5:156482498..156482512, -
4.0e-50FFCP PHASE2:Hg19::chr5:156482498..156482512,-#_06ab789685fde087a73afb5233002b71p@chr5:156482498..156482512, -
4.52e-50FFCP PHASE1:Hg19::chr3:9391106..9391117,-#_508c18cfe01a2dced891d82c51cff2c4p@chr3:9391106..9391117, -
4.52e-50FFCP PHASE2:Hg19::chr20:15879525..15879530,-#_508c18cfe01a2dced891d82c51cff2c4p@chr20:15879525..15879530, -
4.52e-50FFCP PHASE1:Hg19::chr20:15896790..15896803,-#_508c18cfe01a2dced891d82c51cff2c4p@chr20:15896790..15896803, -
4.52e-50FFCP PHASE1:Hg19::chr2:113982238..113982246,-#_508c18cfe01a2dced891d82c51cff2c4p@chr2:113982238..113982246, -
4.52e-50FFCP PHASE2:Hg19::chr2:113982222..113982227,-#_508c18cfe01a2dced891d82c51cff2c4p@chr2:113982222..113982227, -
4.52e-50FFCP PHASE1:Hg19::chr2:70021287..70021296,-#_508c18cfe01a2dced891d82c51cff2c4p@chr2:70021287..70021296, -
4.52e-50FFCP PHASE1:Hg19::chr7:117356954..117356963,-#_508c18cfe01a2dced891d82c51cff2c4p@chr7:117356954..117356963, -
4.52e-50FFCP PHASE1:Hg19::chr20:9292585..9292591,+#_508c18cfe01a2dced891d82c51cff2c4p@chr20:9292585..9292591, +
4.52e-50FFCP PHASE1:Hg19::chr20:15866720..15866725,-#_508c18cfe01a2dced891d82c51cff2c4p@chr20:15866720..15866725, -
4.52e-50FFCP PHASE2:Hg19::chr4:69614262..69614265,-#_508c18cfe01a2dced891d82c51cff2c4p@chr4:69614262..69614265, -
4.52e-50FFCP PHASE1:Hg19::chr20:15916678..15916682,-#_508c18cfe01a2dced891d82c51cff2c4p@chr20:15916678..15916682, -
4.52e-50FFCP PHASE2:Hg19::chr5:122108231..122108249,-#_508c18cfe01a2dced891d82c51cff2c4p@chr5:122108231..122108249, -
4.52e-50FFCP PHASE2:Hg19::chr3:9391106..9391117,-#_508c18cfe01a2dced891d82c51cff2c4p@chr3:9391106..9391117, -
4.52e-50FFCP PHASE1:Hg19::chr2:113982296..113982304,-#_508c18cfe01a2dced891d82c51cff2c4p@chr2:113982296..113982304, -
4.52e-50FFCP PHASE2:Hg19::chr2:113982238..113982246,-#_508c18cfe01a2dced891d82c51cff2c4p@chr2:113982238..113982246, -
4.52e-50FFCP PHASE2:Hg19::chr7:117356954..117356963,-#_508c18cfe01a2dced891d82c51cff2c4p@chr7:117356954..117356963, -
4.52e-50FFCP PHASE1:Hg19::chr9:139472125..139472131,-#_508c18cfe01a2dced891d82c51cff2c4p@chr9:139472125..139472131, -
4.52e-50FFCP PHASE2:Hg19::chr20:9292585..9292591,+#_508c18cfe01a2dced891d82c51cff2c4p@chr20:9292585..9292591, +
4.52e-50FFCP PHASE1:Hg19::chr6:168251039..168251042,+#_508c18cfe01a2dced891d82c51cff2c4p@chr6:168251039..168251042, +
4.52e-50FFCP PHASE1:Hg19::chr5:8981522..8981557,+#_508c18cfe01a2dced891d82c51cff2c4p@chr5:8981522..8981557, +
4.52e-50FFCP PHASE2:Hg19::chr20:15896790..15896803,-#_508c18cfe01a2dced891d82c51cff2c4p@chr20:15896790..15896803, -
4.52e-50FFCP PHASE1:Hg19::chr6:24178711..24178718,-#_508c18cfe01a2dced891d82c51cff2c4p@chr6:24178711..24178718, -

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