UBERON:0001173: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_14665-XAO_0000455 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="Hollow tree organ, the organ parts of which consists of the bile ducts[FMA]." [FMA:14665, Wikipedia:Biliary_tract] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0004912 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001173 | |||
|is_a=UBERON:0004119 ;;UBERON:0013765 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=biliary tree | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0002294 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Hollow tree organ, the organ parts of which consist of the bile ducts.[AAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Hollow tree organ, the organ parts of which consist of the bile ducts.[AAO]" xsd:string | ||
| | |subset=organ_slim;;uberon_slim | ||
| | |synonym="biliary tract" EXACT [] | ||
|union_of= | |||
|xref=AAO:0011020;;FMA:14665;;GAID:279;;MA:0001273;;MESH:A.03.159;;ncithesaurus:Biliary_Tract;;SCTID:181267003;;XAO:0000455 | |||
}} | }} | ||
Latest revision as of 17:16, 12 September 2014
| Name: | biliary tree | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Hollow tree organ, the organ parts of which consists of the bile ducts[FMA]." [FMA:14665, Wikipedia:Biliary_tract] | ||
| Xrefs: |
| ||
| Synonyms: | "biliary tract" EXACT [] | ||
| Alt_id: | UBERON:FMA_14665-XAO_0000455 | ||
| Subset: |
organ_slim uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004119(endoderm-derived structure),UBERON:0013765(digestive system element) |
|---|---|
| develops_from: | UBERON:0004912(biliary bud) |
| part_of: | UBERON:0002294(biliary system) |
Children
| part of: | UBERON:0001174 (common bile duct),UBERON:0002110 (gallbladder),UBERON:0002394 (bile duct),UBERON:0005171 (hepatic duct) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10198-103E9 (gall bladder, adult)
- 10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
- 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)
- 10432-106D9 (bile duct carcinoma cell line:HuCCT1)
- 10470-106I2 (gall bladder carcinoma cell line:TGBC14TKB)
- 10496-107C1 (bile duct carcinoma cell line:TFK-1)
- 10533-107G2
- 10536-107G5 (cholangiocellular carcinoma cell line:HuH-28)
- 10627-108H6
- 10629-108H8
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001173 (biliary tree), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:169549462..169549477,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr2:169549462..169549477, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:8400090..8400093,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr12:8400090..8400093, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:114250006..114250039,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr8:114250006..114250039, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:57687477..57687488,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr4:57687477..57687488, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:97402708..97402712,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr15:97402708..97402712, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:163794592..163794593,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr1:163794592..163794593, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:86335502..86335509,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr4:86335502..86335509, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:65159026..65159034,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr18:65159026..65159034, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr7:117101788..117101793,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr7:117101788..117101793, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:109223779..109223789,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr11:109223779..109223789, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:35096519..35096524,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr17:35096519..35096524, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:86713876..86713879,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr8:86713876..86713879, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:43407825..43407830,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr4:43407825..43407830, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr16:28911901..28911906,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr16:28911901..28911906, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:138241693..138241697,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr1:138241693..138241697, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:113543694..113543702,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr13:113543694..113543702, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:93895817..93895819,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr10:93895817..93895819, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:35106749..35106752,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr17:35106749..35106752, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:114250006..114250039,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr8:114250006..114250039, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:117737077..117737096,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr11:117737077..117737096, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:186559285..186559288,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr1:186559285..186559288, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:35900327..35900366,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr18:35900327..35900366, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr6:34549876..34549892,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr6:34549876..34549892, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:90508949..90508955,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr15:90508949..90508955, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:38831400..38831402,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr18:38831400..38831402, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:85587155..85587188,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr10:85587155..85587188, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr5:114422970..114422985,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr5:114422970..114422985, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:34798597..34798606,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr17:34798597..34798606, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:25364645..25364655,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr12:25364645..25364655, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:68437375..68437378,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr11:68437375..68437378, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr7:87919399..87919406,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr7:87919399..87919406, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr5:64344878..64344887,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr5:64344878..64344887, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:117829935..117829959,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr11:117829935..117829959, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:100752983..100752984,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr12:100752983..100752984, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr2:133323630..133323631,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr2:133323630..133323631, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:42915185..42915192,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr9:42915185..42915192, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:113542610..113542614,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr13:113542610..113542614, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:34796428..34796430,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr17:34796428..34796430, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr19:29573929..29573932,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr19:29573929..29573932, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:89310639..89310641,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr8:89310639..89310641, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:111108947..111108951,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr8:111108947..111108951, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:129180613..129180616,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr6:129180613..129180616, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:86691503..86691504,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr12:86691503..86691504, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:92938260..92938264,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr6:92938260..92938264, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:39297570..39297573,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr18:39297570..39297573, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:5840965..5840966,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr13:5840965..5840966, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:173044327..173044331,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr1:173044327..173044331, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr5:33088768..33088773,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr5:33088768..33088773, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:65159026..65159034,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr18:65159026..65159034, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:44793802..44793835,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr18:44793802..44793835, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr6:92938260..92938264,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr6:92938260..92938264, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:62199266..62199267,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr9:62199266..62199267, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:35093616..35093631,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr17:35093616..35093631, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:93819538..93819549,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr10:93819538..93819549, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:118287827..118287833,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr11:118287827..118287833, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:86335502..86335509,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr4:86335502..86335509, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:113053257..113053258,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr13:113053257..113053258, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:8471698..8471701,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr10:8471698..8471701, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:84756280..84756286,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr2:84756280..84756286, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:60398371..60398393,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr18:60398371..60398393, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:89310639..89310641,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr8:89310639..89310641, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:45920408..45920437,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr9:45920408..45920437, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:133323630..133323631,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr2:133323630..133323631, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:173044327..173044331,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr1:173044327..173044331, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr14:8928284..8928331,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr14:8928284..8928331, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr9:62199266..62199267,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr9:62199266..62199267, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr5:124112234..124112240,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr5:124112234..124112240, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:127816016..127816021,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr8:127816016..127816021, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:67870501..67870507,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr17:67870501..67870507, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr14:8928284..8928331,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr14:8928284..8928331, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:32178407..32178408,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr15:32178407..32178408, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:119254092..119254100,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr11:119254092..119254100, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:86691503..86691504,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr12:86691503..86691504, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:8471698..8471701,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr10:8471698..8471701, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:113550715..113550722,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr13:113550715..113550722, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:93942324..93942342,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr10:93942324..93942342, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:132405466..132405470,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr1:132405466..132405470, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:117829935..117829959,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr11:117829935..117829959, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:87046930..87046933,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr12:87046930..87046933, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:96429295..96429302,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr13:96429295..96429302, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:25364645..25364655,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr12:25364645..25364655, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr19:29573929..29573932,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr19:29573929..29573932, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:24807620..24807650,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr17:24807620..24807650, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:82193340..82193343,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr15:82193340..82193343, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:39297570..39297573,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr18:39297570..39297573, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr14:15179132..15179141,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p8@Il3ra |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:11935531..11935538,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr2:11935531..11935538, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:35093377..35093381,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr17:35093377..35093381, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:62009160..62009164,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr4:62009160..62009164, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:15678147..15678149,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr6:15678147..15678149, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:109223756..109223764,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr11:109223756..109223764, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:74684893..74684910,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr12:74684893..74684910, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:126939557..126939562,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr4:126939557..126939562, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:35881716..35881727,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr18:35881716..35881727, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:96429295..96429302,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr13:96429295..96429302, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:42915220..42915225,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr9:42915220..42915225, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:113543694..113543702,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr13:113543694..113543702, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:34798555..34798562,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr17:34798555..34798562, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr16:91441786..91441787,-#_5703c93ecdfe5914d53ea23a4cc8b84c | p@chr16:91441786..91441787, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr14:15179132..15179141,+#_5703c93ecdfe5914d53ea23a4cc8b84c | p8@Il3ra |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Hollow tree organ, the organ parts of which consist of the bile ducts.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
