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{{UBERON
{{UBERON
|id=UBERON:0001301
|alt_id=UBERON:FMA_18255-MA_0000397-MIAA_0000130
|name=epididymis
|anatomical_img_id=FMA:18255
|namespace=
|def="A narrow, tightly-coiled tube connecting the efferent ducts from the rear of each testicle to its vas deferens." [Wikipedia:Epididymis]
|xref=BTO:0000408;;EFO:0000982;;EMAPA:19290;;EV:0100103;;FMA:18255;;GAID:397;;galen:Epididymis;;http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_testis_surface.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_testis_surface.jpg/200px-Illu_testis_surface.jpg;;MA:0000397;;MAT:0000130;;MESH:A.05.360.444.849.286;;MIAA:0000130;;ncithesaurus:Epididymis;;SCTID:181432000;;VHOG:0001265
|is_a=UBERON:0005904
|synonym="epididymus" EXACT []
|comment=Taxon notes: A similar, but probably non-homologous, structure is found in cartilaginous fishes[WP]. Kardong has epididymis in elasmobranch.Structures notes: Typically divided into three main regions. In reptiles, there is an additional canal between the testis and the head of the epididymis, which receives the various efferent ducts. This is, however, absent in all birds and mammals. The epididymis is covered by a two layered pseudostratified epithelium. The epithelium is separated by a basement membrane from the connective tissue wall which has smooth muscle cells.
|comment=Taxon notes: A similar, but probably non-homologous, structure is found in cartilaginous fishes[WP]. Kardong has epididymis in elasmobranch.Structures notes: Typically divided into three main regions. In reptiles, there is an additional canal between the testis and the head of the epididymis, which receives the various efferent ducts. This is, however, absent in all birds and mammals. The epididymis is covered by a two layered pseudostratified epithelium. The epithelium is separated by a basement membrane from the connective tissue wall which has smooth muscle cells.
|alt_id=UBERON:FMA_18255-MA_0000397-MIAA_0000130
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A narrow, tightly-coiled tube connecting the efferent ducts from the rear of each testicle to its vas deferens." [Wikipedia:Epididymis]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0003074
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001301
|is_a=UBERON:0005904
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=epididymis
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0006947
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="epididymus" EXACT []
|union_of=
|xref=BTO:0000408;;EFO:0000982;;EMAPA:19290;;EV:0100103;;FMA:18255;;GAID:397;;galen:Epididymis;;http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_testis_surface.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_testis_surface.jpg/200px-Illu_testis_surface.jpg;;MA:0000397;;MAT:0000130;;MESH:A.05.360.444.849.286;;MIAA:0000130;;ncithesaurus:Epididymis;;SCTID:181432000;;VHOG:0001265
}}
}}

Latest revision as of 17:17, 12 September 2014

Name:epididymis
Namespace:FANTOM
Definition:"A narrow, tightly-coiled tube connecting the efferent ducts from the rear of each testicle to its vas deferens." [Wikipedia:Epididymis]
Xrefs:
links:

BTO:0000408
EFO:0000982
EMAPA:19290
EV:0100103
FMA:18255
GAID:397
galen:Epididymis
[1]
[2]
MA:0000397
MAT:0000130
MESH:A.05.360.444.849.286
MIAA:0000130
ncithesaurus:Epididymis
SCTID:181432000

VHOG:0001265
Synonyms: "epididymus" EXACT []
Comments:Taxon notes: A similar, but probably non-homologous, structure is found in cartilaginous fishes[WP]. Kardong has epididymis in elasmobranch.Structures notes: Typically divided into three main regions. In reptiles, there is an additional canal between the testis and the head of the epididymis, which receives the various efferent ducts. This is, however, absent in all birds and mammals. The epididymis is covered by a two layered pseudostratified epithelium. The epithelium is separated by a basement membrane from the connective tissue wall which has smooth muscle cells.
Alt_id: UBERON:FMA_18255-MA_0000397-MIAA_0000130
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005904(duct of male reproductive system)
develops_from:UBERON:0003074(mesonephric duct)
part_of:UBERON:0006947(male genital duct)



Children

derives from:FF:0011289 (epididymis- adult sample),FF:0011471 (mouse epididymis and seminiferous tubule- neonate N30 sample),FF:0011506 (mouse epididymis and seminiferous tubule- neonate N00 sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001301 (epididymis), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr15:25165648..25165652,+#_821503cbafefcb9933eb6edc6a929677p@chr15:25165648..25165652, +
5.42e-195FFCP PHASE1:Hg19::chr10:119878409..119878417,-#_821503cbafefcb9933eb6edc6a929677p@chr10:119878409..119878417, -
5.42e-195FFCP PHASE2:Hg19::chr20:138078..138085,+#_821503cbafefcb9933eb6edc6a929677p4@DEFB127
5.42e-195FFCP PHASE2:Hg19::chr19:48497953..48497960,+#_821503cbafefcb9933eb6edc6a929677p7@ELSPBP1
5.42e-195FFCP PHASE1:Hg19::chr2:128389391..128389408,+#_821503cbafefcb9933eb6edc6a929677p@chr2:128389391..128389408, +
5.42e-195FFCP PHASE1:Hg19::chr12:133187101..133187102,-#_821503cbafefcb9933eb6edc6a929677p5@LOC100507055
5.42e-195FFCP PHASE2:Hg19::chr17:48456309..48456321,+#_821503cbafefcb9933eb6edc6a929677p3@EME1
5.42e-195FFCP PHASE2:Hg19::chr4:170834002..170834005,+#_821503cbafefcb9933eb6edc6a929677p@chr4:170834002..170834005, +
5.42e-195FFCP PHASE2:Hg19::chr2:183567799..183567806,+#_821503cbafefcb9933eb6edc6a929677p@chr2:183567799..183567806, +
5.42e-195FFCP PHASE1:Hg19::chr9:139652568..139652569,-#_821503cbafefcb9933eb6edc6a929677p17@LCN8
5.42e-195FFCP PHASE2:Hg19::chrX:112123787..112123792,+#_821503cbafefcb9933eb6edc6a929677p@chrX:112123787..112123792, +
5.42e-195FFCP PHASE1:Hg19::chr4:153486478..153486500,-#_821503cbafefcb9933eb6edc6a929677p@chr4:153486478..153486500, -
5.42e-195FFCP PHASE1:Hg19::chr11:64323569..64323574,+#_821503cbafefcb9933eb6edc6a929677p7@SLC22A11
5.42e-195FFCP PHASE2:Hg19::chr19:56784131..56784155,+#_821503cbafefcb9933eb6edc6a929677p@chr19:56784131..56784155, +
5.42e-195FFCP PHASE1:Hg19::chr10:77806947..77806952,+#_821503cbafefcb9933eb6edc6a929677p@chr10:77806947..77806952, +
5.42e-195FFCP PHASE2:Hg19::chr1:182367927..182367934,-#_821503cbafefcb9933eb6edc6a929677p@chr1:182367927..182367934, -
5.42e-195FFCP PHASE1:Hg19::chr1:120229056..120229061,+#_821503cbafefcb9933eb6edc6a929677p@chr1:120229056..120229061, +
5.42e-195FFCP PHASE1:Hg19::chr14:21502129..21502134,-#_821503cbafefcb9933eb6edc6a929677p5@RNASE13
5.42e-195FFCP PHASE2:Hg19::chr20:210094..210101,+#_821503cbafefcb9933eb6edc6a929677p@chr20:210094..210101, +
5.42e-195FFCP PHASE1:Hg19::chr3:48264969..48264974,+#_821503cbafefcb9933eb6edc6a929677p5@CAMP
5.42e-195FFCP PHASE1:Hg19::chr1:209616798..209616803,-#_821503cbafefcb9933eb6edc6a929677p@chr1:209616798..209616803, -
5.42e-195FFCP PHASE1:Hg19::chr2:104991804..104991842,-#_821503cbafefcb9933eb6edc6a929677p@chr2:104991804..104991842, -
5.42e-195FFCP PHASE2:Hg19::chr11:61280976..61280983,-#_821503cbafefcb9933eb6edc6a929677p@chr11:61280976..61280983, -
5.42e-195FFCP PHASE2:Hg19::chr20:44258358..44258370,+#_821503cbafefcb9933eb6edc6a929677p2@WFDC10A
5.42e-195FFCP PHASE2:Hg19::chr15:63383501..63383508,+#_821503cbafefcb9933eb6edc6a929677p@chr15:63383501..63383508, +
5.42e-195FFCP PHASE2:Hg19::chr20:170317..170326,-#_821503cbafefcb9933eb6edc6a929677p2@DEFB128
5.42e-195FFCP PHASE1:Hg19::chr8:11839760..11839774,+#_821503cbafefcb9933eb6edc6a929677p1@DEFB135
5.42e-195FFCP PHASE1:Hg19::chr11:62009104..62009124,+#_821503cbafefcb9933eb6edc6a929677p@chr11:62009104..62009124, +
5.42e-195FFCP PHASE2:Hg19::chr11:7727995..7728008,-#_821503cbafefcb9933eb6edc6a929677p1@OVCH2
5.42e-195FFCP PHASE2:Hg19::chr4:143880345..143880349,-#_821503cbafefcb9933eb6edc6a929677p@chr4:143880345..143880349, -
5.42e-195FFCP PHASE1:Hg19::chr8:24314164..24314166,+#_821503cbafefcb9933eb6edc6a929677p@chr8:24314164..24314166, +
5.42e-195FFCP PHASE1:Hg19::chr6:28493753..28493768,+#_821503cbafefcb9933eb6edc6a929677p1@GPX5
5.42e-195FFCP PHASE1:Hg19::chr20:210156..210162,+#_821503cbafefcb9933eb6edc6a929677p@chr20:210156..210162, +
5.42e-195FFCP PHASE1:Hg19::chr1:27277233..27277251,-#_821503cbafefcb9933eb6edc6a929677p@chr1:27277233..27277251, -
5.42e-195FFCP PHASE2:Hg19::chr5:59668546..59668555,-#_821503cbafefcb9933eb6edc6a929677p87@PDE4D
5.42e-195FFCP PHASE1:Hg19::chr10:119590679..119590687,-#_821503cbafefcb9933eb6edc6a929677p@chr10:119590679..119590687, -
5.42e-195FFCP PHASE1:Hg19::chr11:26586938..26586948,-#_821503cbafefcb9933eb6edc6a929677p9@MUC15
5.42e-195FFCP PHASE2:Hg19::chr14:21502944..21502954,-#_821503cbafefcb9933eb6edc6a929677p2@RNASE13
5.42e-195FFCP PHASE1:Hg19::chr17:17480731..17480737,-#_821503cbafefcb9933eb6edc6a929677p25@PEMT
5.42e-195FFCP PHASE2:Hg19::chr8:24342831..24342840,+#_821503cbafefcb9933eb6edc6a929677p@chr8:24342831..24342840, +
5.42e-195FFCP PHASE1:Hg19::chr14:21053277..21053291,-#_821503cbafefcb9933eb6edc6a929677p@chr14:21053277..21053291, -
5.42e-195FFCP PHASE1:Hg19::chr2:97578539..97578563,-#_821503cbafefcb9933eb6edc6a929677p@chr2:97578539..97578563, -
5.42e-195FFCP PHASE1:Hg19::chrX:15525470..15525483,+#_821503cbafefcb9933eb6edc6a929677p5@BMX
5.42e-195FFCP PHASE1:Hg19::chr6:50927244..50927252,+#_821503cbafefcb9933eb6edc6a929677p@chr6:50927244..50927252, +
5.42e-195FFCP PHASE2:Hg19::chr9:139864447..139864478,+#_821503cbafefcb9933eb6edc6a929677p@chr9:139864447..139864478, +
5.42e-195FFCP PHASE1:Hg19::chr20:170344..170356,-#_821503cbafefcb9933eb6edc6a929677p1@DEFB128
5.42e-195FFCP PHASE2:Hg19::chr8:11853819..11853827,-#_821503cbafefcb9933eb6edc6a929677p1@DEFB134
5.42e-195FFCP PHASE1:Hg19::chrX:23684731..23684738,-#_821503cbafefcb9933eb6edc6a929677p@chrX:23684731..23684738, -
5.42e-195FFCP PHASE1:Hg19::chr9:139652508..139652517,-#_821503cbafefcb9933eb6edc6a929677p3@LCN8
5.42e-195FFCP PHASE2:Hg19::chr11:125613178..125613226,-#_821503cbafefcb9933eb6edc6a929677p@chr11:125613178..125613226, -
5.42e-195FFCP PHASE1:Hg19::chr19:6226164..6226186,-#_821503cbafefcb9933eb6edc6a929677p3@AK027795
5.42e-195FFCP PHASE2:Hg19::chr9:133911487..133911496,+#_821503cbafefcb9933eb6edc6a929677p@chr9:133911487..133911496, +
5.42e-195FFCP PHASE2:Hg19::chrX:23694251..23694254,-#_821503cbafefcb9933eb6edc6a929677p@chrX:23694251..23694254, -
5.42e-195FFCP PHASE1:Hg19::chr15:25165629..25165640,+#_821503cbafefcb9933eb6edc6a929677p@chr15:25165629..25165640, +
5.42e-195FFCP PHASE1:Hg19::chr7:20655274..20655279,+#_821503cbafefcb9933eb6edc6a929677p8@ABCB5
5.42e-195FFCP PHASE1:Hg19::chr4:153167893..153167900,-#_821503cbafefcb9933eb6edc6a929677p@chr4:153167893..153167900, -
5.42e-195FFCP PHASE2:Hg19::chr2:177029128..177029132,+#_821503cbafefcb9933eb6edc6a929677p@chr2:177029128..177029132, +
5.42e-195FFCP PHASE2:Hg19::chr14:93279902..93279925,+#_821503cbafefcb9933eb6edc6a929677p@chr14:93279902..93279925, +
5.42e-195FFCP PHASE2:Hg19::chr6:51280374..51280406,-#_821503cbafefcb9933eb6edc6a929677p@chr6:51280374..51280406, -
5.42e-195FFCP PHASE2:Hg19::chr2:128389391..128389408,+#_821503cbafefcb9933eb6edc6a929677p@chr2:128389391..128389408, +
5.42e-195FFCP PHASE1:Hg19::chr10:127467917..127467927,-#_821503cbafefcb9933eb6edc6a929677p@chr10:127467917..127467927, -
5.42e-195FFCP PHASE2:Hg19::chr9:139652520..139652524,-#_821503cbafefcb9933eb6edc6a929677p12@LCN8
5.42e-195FFCP PHASE1:Hg19::chr14:21238304..21238345,+#_821503cbafefcb9933eb6edc6a929677p@chr14:21238304..21238345, +
5.42e-195FFCP PHASE2:Hg19::chr12:48383331..48383341,-#_821503cbafefcb9933eb6edc6a929677p@chr12:48383331..48383341, -
5.42e-195FFCP PHASE1:Hg19::chr11:71578488..71578491,+#_821503cbafefcb9933eb6edc6a929677p@chr11:71578488..71578491, +
5.42e-195FFCP PHASE2:Hg19::chr4:153167929..153167932,-#_821503cbafefcb9933eb6edc6a929677p@chr4:153167929..153167932, -
5.42e-195FFCP PHASE2:Hg19::chrX:100985204..100985241,+#_821503cbafefcb9933eb6edc6a929677p@chrX:100985204..100985241, +
5.42e-195FFCP PHASE1:Hg19::chr11:26659947..26659973,+#_821503cbafefcb9933eb6edc6a929677p@chr11:26659947..26659973, +
5.42e-195FFCP PHASE2:Hg19::chr9:139141139..139141172,+#_821503cbafefcb9933eb6edc6a929677p@chr9:139141139..139141172, +
5.42e-195FFCP PHASE2:Hg19::chr8:26292001..26292021,-#_821503cbafefcb9933eb6edc6a929677p1@ENST00000515686
5.42e-195FFCP PHASE1:Hg19::chr14:21058820..21058830,+#_821503cbafefcb9933eb6edc6a929677p1@ENST00000554993, p1@uc001vxu.1
5.42e-195FFCP PHASE2:Hg19::chrX:40159589..40159601,-#_821503cbafefcb9933eb6edc6a929677p@chrX:40159589..40159601, -
5.42e-195FFCP PHASE1:Hg19::chr16:56385193..56385202,+#_821503cbafefcb9933eb6edc6a929677p@chr16:56385193..56385202, +
5.42e-195FFCP PHASE1:Hg19::chr4:170834002..170834005,+#_821503cbafefcb9933eb6edc6a929677p@chr4:170834002..170834005, +
5.42e-195FFCP PHASE1:Hg19::chr2:183567799..183567806,+#_821503cbafefcb9933eb6edc6a929677p@chr2:183567799..183567806, +
5.42e-195FFCP PHASE1:Hg19::chr20:44299411..44299420,-#_821503cbafefcb9933eb6edc6a929677p@chr20:44299411..44299420, -
5.42e-195FFCP PHASE2:Hg19::chr7:155871488..155871492,+#_821503cbafefcb9933eb6edc6a929677p@chr7:155871488..155871492, +
5.42e-195FFCP PHASE2:Hg19::chr8:132302164..132302165,+#_821503cbafefcb9933eb6edc6a929677p@chr8:132302164..132302165, +
5.42e-195FFCP PHASE2:Hg19::chr1:120229056..120229061,+#_821503cbafefcb9933eb6edc6a929677p@chr1:120229056..120229061, +
5.42e-195FFCP PHASE2:Hg19::chr16:55909261..55909266,-#_821503cbafefcb9933eb6edc6a929677p3@CES5A
5.42e-195FFCP PHASE2:Hg19::chr10:64653965..64653975,-#_821503cbafefcb9933eb6edc6a929677p@chr10:64653965..64653975, -
5.42e-195FFCP PHASE2:Hg19::chr4:57524061..57524074,-#_821503cbafefcb9933eb6edc6a929677p17@HOPX
5.42e-195FFCP PHASE2:Hg19::chr1:209616798..209616803,-#_821503cbafefcb9933eb6edc6a929677p@chr1:209616798..209616803, -
5.42e-195FFCP PHASE1:Hg19::chr20:44207942..44207956,-#_821503cbafefcb9933eb6edc6a929677p3@WFDC8
5.42e-195FFCP PHASE1:Hg19::chr19:18874785..18874809,-#_821503cbafefcb9933eb6edc6a929677p@chr19:18874785..18874809, -
5.42e-195FFCP PHASE2:Hg19::chrX:15887310..15887344,-#_821503cbafefcb9933eb6edc6a929677p@chrX:15887310..15887344, -
5.42e-195FFCP PHASE1:Hg19::chr19:56784204..56784211,+#_821503cbafefcb9933eb6edc6a929677p@chr19:56784204..56784211, +
5.42e-195FFCP PHASE1:Hg19::chr4:143880345..143880349,-#_821503cbafefcb9933eb6edc6a929677p@chr4:143880345..143880349, -
5.42e-195FFCP PHASE1:Hg19::chr14:21502902..21502916,-#_821503cbafefcb9933eb6edc6a929677p1@RNASE13
5.42e-195FFCP PHASE2:Hg19::chr20:210156..210162,+#_821503cbafefcb9933eb6edc6a929677p@chr20:210156..210162, +
5.42e-195FFCP PHASE2:Hg19::chr1:27277233..27277251,-#_821503cbafefcb9933eb6edc6a929677p@chr1:27277233..27277251, -
5.42e-195FFCP PHASE1:Hg19::chr5:59668546..59668555,-#_821503cbafefcb9933eb6edc6a929677p87@PDE4D
5.42e-195FFCP PHASE2:Hg19::chr2:104991804..104991842,-#_821503cbafefcb9933eb6edc6a929677p@chr2:104991804..104991842, -
5.42e-195FFCP PHASE2:Hg19::chr16:1338129..1338134,+#_821503cbafefcb9933eb6edc6a929677p@chr16:1338129..1338134, +
5.42e-195FFCP PHASE2:Hg19::chr10:119799712..119799720,+#_821503cbafefcb9933eb6edc6a929677p2@ENST00000417968
5.42e-195FFCP PHASE1:Hg19::chr20:55865344..55865346,-#_821503cbafefcb9933eb6edc6a929677p@chr20:55865344..55865346, -
5.42e-195FFCP PHASE1:Hg19::chr1:209616877..209616883,-#_821503cbafefcb9933eb6edc6a929677p@chr1:209616877..209616883, -
5.42e-195FFCP PHASE2:Hg19::chr4:88161653..88161660,-#_821503cbafefcb9933eb6edc6a929677p2@ENST00000506274
5.42e-195FFCP PHASE2:Hg19::chr17:2278694..2278702,+#_821503cbafefcb9933eb6edc6a929677p25@SGSM2
5.42e-195FFCP PHASE2:Hg19::chr11:61281014..61281017,-#_821503cbafefcb9933eb6edc6a929677p@chr11:61281014..61281017, -

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