UBERON:0001560: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_45733-MA_0000589 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001560 | |||
|is_a=UBERON:0000064 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=neck of organ | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="organ neck" EXACT [] | ||
|union_of= | |||
|xref=FMA:45733 | |||
}} | }} | ||
Latest revision as of 17:19, 12 September 2014
| Name: | neck of organ | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Xrefs: |
| ||
| Synonyms: | "organ neck" EXACT [] | ||
| Alt_id: | UBERON:FMA_45733-MA_0000589 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000064(organ part) |
|---|
Children
| is a: | UBERON:0000002 (uterine cervix) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10013-101C4 (cervix, adult, pool1)
- 10431-106D8 (epidermoid carcinoma cell line:Ca Ski)
- 10530-107F8
- 10552-107I3 (cervical cancer cell line:D98-AH2)
- 10553-107I4 (cervical cancer cell line:ME-180)
- 10589-108D4 (argyrophil small cell carcinoma cell line:TC-YIK)
- 10598-108E4
- 10655-109B7
- 10754-110D7
- 10755-110D8
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001560 (neck of organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.22e-44 | FFCP PHASE1:Hg19::chr14:104394868..104394874,+#_5cf805f22de7660727e808135d75c93f | p5@TDRD9 |
| 1.22e-44 | FFCP PHASE2:Hg19::chr14:104394868..104394874,+#_5cf805f22de7660727e808135d75c93f | p5@TDRD9 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr17:27892922..27892925,+#_c0293cf5db285ab44302650b127d8d1c | p@chr17:27892922..27892925, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:14849447..14849450,-#_c0293cf5db285ab44302650b127d8d1c | p7@GUCY2C |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:207193762..207193766,+#_c0293cf5db285ab44302650b127d8d1c | p@chr1:207193762..207193766, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr19:16838056..16838070,+#_c0293cf5db285ab44302650b127d8d1c | p@chr19:16838056..16838070, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr20:22449463..22449467,-#_c0293cf5db285ab44302650b127d8d1c | p@chr20:22449463..22449467, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr17:32314322..32314327,-#_c0293cf5db285ab44302650b127d8d1c | p@chr17:32314322..32314327, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr10:62029969..62029974,-#_c0293cf5db285ab44302650b127d8d1c | p@chr10:62029969..62029974, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:121054330..121054333,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:121054330..121054333, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:131117116..131117123,-#_c0293cf5db285ab44302650b127d8d1c | p@chr12:131117116..131117123, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr20:21918384..21918387,+#_c0293cf5db285ab44302650b127d8d1c | p@chr20:21918384..21918387, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:41508626..41508633,+#_c0293cf5db285ab44302650b127d8d1c | p@chr8:41508626..41508633, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr5:160356414..160356417,-#_c0293cf5db285ab44302650b127d8d1c | p@chr5:160356414..160356417, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:20705180..20705181,+#_c0293cf5db285ab44302650b127d8d1c | p@chr6:20705180..20705181, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr17:78152310..78152314,+#_c0293cf5db285ab44302650b127d8d1c | p10@CARD14 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:41485005..41485017,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:41485005..41485017, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr7:127260123..127260165,+#_c0293cf5db285ab44302650b127d8d1c | p@chr7:127260123..127260165, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr2:933356..933367,-#_c0293cf5db285ab44302650b127d8d1c | p@chr2:933356..933367, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr22:32555214..32555221,-#_c0293cf5db285ab44302650b127d8d1c | p2@C22orf42 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:185016843..185016846,+#_c0293cf5db285ab44302650b127d8d1c | p@chr3:185016843..185016846, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:152084890..152084896,+#_c0293cf5db285ab44302650b127d8d1c | p@chr6:152084890..152084896, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:49467718..49467724,+#_c0293cf5db285ab44302650b127d8d1c | p4@GLYATL3 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr20:43727212..43727217,-#_c0293cf5db285ab44302650b127d8d1c | p@chr20:43727212..43727217, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:49467576..49467583,+#_c0293cf5db285ab44302650b127d8d1c | p5@GLYATL3 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:41485217..41485222,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:41485217..41485222, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr10:99550654..99550658,-#_c0293cf5db285ab44302650b127d8d1c | p@chr10:99550654..99550658, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr4:148401920..148401930,+#_c0293cf5db285ab44302650b127d8d1c | p7@EDNRA |
| 4.27e-34 | FFCP PHASE2:Hg19::chr17:32314379..32314387,-#_c0293cf5db285ab44302650b127d8d1c | p@chr17:32314379..32314387, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:39290499..39290502,-#_c0293cf5db285ab44302650b127d8d1c | p8@KCNK16 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr17:39150341..39150346,-#_c0293cf5db285ab44302650b127d8d1c | p2@KRTAP3-3 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:121062548..121062551,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:121062548..121062551, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr20:22449463..22449467,-#_c0293cf5db285ab44302650b127d8d1c | p@chr20:22449463..22449467, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr20:21918392..21918404,+#_c0293cf5db285ab44302650b127d8d1c | p@chr20:21918392..21918404, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr17:27892922..27892925,+#_c0293cf5db285ab44302650b127d8d1c | p@chr17:27892922..27892925, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:4810204..4810210,+#_c0293cf5db285ab44302650b127d8d1c | p34@ITPR1 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr2:182548451..182548457,-#_c0293cf5db285ab44302650b127d8d1c | p@chr2:182548451..182548457, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:20705180..20705181,+#_c0293cf5db285ab44302650b127d8d1c | p@chr6:20705180..20705181, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:41486855..41486866,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:41486855..41486866, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:121058540..121058543,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:121058540..121058543, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr10:18689637..18689645,+#_c0293cf5db285ab44302650b127d8d1c | p28@CACNB2 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:2439293..2439304,-#_c0293cf5db285ab44302650b127d8d1c | p@chr11:2439293..2439304, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:41508626..41508633,+#_c0293cf5db285ab44302650b127d8d1c | p@chr8:41508626..41508633, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr10:62030063..62030071,-#_c0293cf5db285ab44302650b127d8d1c | p@chr10:62030063..62030071, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:2436541..2436561,-#_c0293cf5db285ab44302650b127d8d1c | p@chr11:2436541..2436561, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr19:7184762..7184771,-#_c0293cf5db285ab44302650b127d8d1c | p@chr19:7184762..7184771, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:49467576..49467583,+#_c0293cf5db285ab44302650b127d8d1c | p5@GLYATL3 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr2:182548440..182548448,-#_c0293cf5db285ab44302650b127d8d1c | p@chr2:182548440..182548448, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:180892861..180892862,+#_c0293cf5db285ab44302650b127d8d1c | p31@SOX2-OT |
| 4.27e-34 | FFCP PHASE2:Hg19::chr2:165706192..165706200,+#_c0293cf5db285ab44302650b127d8d1c | p@chr2:165706192..165706200, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr4:148401920..148401930,+#_c0293cf5db285ab44302650b127d8d1c | p7@EDNRA |
| 4.27e-34 | FFCP PHASE2:Hg19::chr5:170105957..170105992,-#_c0293cf5db285ab44302650b127d8d1c | p@chr5:170105957..170105992, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:41485005..41485017,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:41485005..41485017, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr7:127260123..127260165,+#_c0293cf5db285ab44302650b127d8d1c | p@chr7:127260123..127260165, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr2:933356..933367,-#_c0293cf5db285ab44302650b127d8d1c | p@chr2:933356..933367, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr22:32555214..32555221,-#_c0293cf5db285ab44302650b127d8d1c | p2@C22orf42 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr9:91077381..91077392,+#_c0293cf5db285ab44302650b127d8d1c | p@chr9:91077381..91077392, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:152084890..152084896,+#_c0293cf5db285ab44302650b127d8d1c | p@chr6:152084890..152084896, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr17:27892945..27892952,+#_c0293cf5db285ab44302650b127d8d1c | p@chr17:27892945..27892952, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr16:15596148..15596153,+#_c0293cf5db285ab44302650b127d8d1c | p7@C16orf45 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr17:32314379..32314387,-#_c0293cf5db285ab44302650b127d8d1c | p@chr17:32314379..32314387, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:121056304..121056311,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:121056304..121056311, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr14:93389079..93389083,+#_c0293cf5db285ab44302650b127d8d1c | p24@CHGA |
| 4.27e-34 | FFCP PHASE2:Hg19::chr4:22737597..22737604,+#_c0293cf5db285ab44302650b127d8d1c | p@chr4:22737597..22737604, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:131117129..131117135,-#_c0293cf5db285ab44302650b127d8d1c | p@chr12:131117129..131117135, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr20:21918392..21918404,+#_c0293cf5db285ab44302650b127d8d1c | p@chr20:21918392..21918404, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr22:44569031..44569036,+#_c0293cf5db285ab44302650b127d8d1c | p27@PARVG |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:4810204..4810210,+#_c0293cf5db285ab44302650b127d8d1c | p34@ITPR1 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr2:182546258..182546267,+#_c0293cf5db285ab44302650b127d8d1c | p@chr2:182546258..182546267, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr17:39755914..39755961,-#_c0293cf5db285ab44302650b127d8d1c | p@chr17:39755914..39755961, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:14849447..14849450,-#_c0293cf5db285ab44302650b127d8d1c | p7@GUCY2C |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:41485037..41485047,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:41485037..41485047, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:121054330..121054333,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:121054330..121054333, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:2436019..2436030,-#_c0293cf5db285ab44302650b127d8d1c | p@chr11:2436019..2436030, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:131117116..131117123,-#_c0293cf5db285ab44302650b127d8d1c | p@chr12:131117116..131117123, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:49467630..49467640,+#_c0293cf5db285ab44302650b127d8d1c | p3@GLYATL3 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:41486855..41486866,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:41486855..41486866, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:180892861..180892862,+#_c0293cf5db285ab44302650b127d8d1c | p31@SOX2-OT |
| 4.27e-34 | FFCP PHASE1:Hg19::chr2:165706192..165706200,+#_c0293cf5db285ab44302650b127d8d1c | p@chr2:165706192..165706200, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr14:93389079..93389083,+#_c0293cf5db285ab44302650b127d8d1c | p24@CHGA |
| 4.27e-34 | FFCP PHASE1:Hg19::chr9:91077381..91077392,+#_c0293cf5db285ab44302650b127d8d1c | p@chr9:91077381..91077392, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr16:15596148..15596153,+#_c0293cf5db285ab44302650b127d8d1c | p7@C16orf45 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr9:35237460..35237466,+#_c0293cf5db285ab44302650b127d8d1c | p@chr9:35237460..35237466, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:121066549..121066554,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:121066549..121066554, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr19:7184762..7184771,-#_c0293cf5db285ab44302650b127d8d1c | p@chr19:7184762..7184771, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:129597668..129597672,+#_c0293cf5db285ab44302650b127d8d1c | p@chr6:129597668..129597672, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr1:54417667..54417685,+#_c0293cf5db285ab44302650b127d8d1c | p9@LRRC42 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr20:21918433..21918444,+#_c0293cf5db285ab44302650b127d8d1c | p@chr20:21918433..21918444, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr17:78152310..78152314,+#_c0293cf5db285ab44302650b127d8d1c | p10@CARD14 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr17:27892945..27892952,+#_c0293cf5db285ab44302650b127d8d1c | p@chr17:27892945..27892952, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr14:57052405..57052416,+#_c0293cf5db285ab44302650b127d8d1c | p4@C14orf101 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr17:26911586..26911592,-#_c0293cf5db285ab44302650b127d8d1c | p9@SPAG5 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:41508303..41508308,-#_c0293cf5db285ab44302650b127d8d1c | p2@NKX6-3 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr7:150871938..150871949,-#_c0293cf5db285ab44302650b127d8d1c | p3@GBX1 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:121062548..121062551,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:121062548..121062551, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:187008638..187008641,+#_c0293cf5db285ab44302650b127d8d1c | p10@ENST00000541007, p6@uc003frl.2 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr4:22737597..22737604,+#_c0293cf5db285ab44302650b127d8d1c | p@chr4:22737597..22737604, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr5:40984132..40984133,+#_c0293cf5db285ab44302650b127d8d1c | p@chr5:40984132..40984133, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr20:45400010..45400026,-#_c0293cf5db285ab44302650b127d8d1c | p@chr20:45400010..45400026, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr22:44569031..44569036,+#_c0293cf5db285ab44302650b127d8d1c | p27@PARVG |
