Personal tools

UBERON:0001828: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0001828
|alt_id=UBERON:FMA_59762-MA_0000342
|name=gingiva
|anatomical_img_id=FMA:59762
|namespace=
|def="The gingiva, or gums, consists of the mucosal tissue that lies over the alveolar bone. [WP,unvetted]." [Wikipedia:Gingiva]
|xref=BTO:0000519;;EFO:0001925;;EMAPA:18967;;EMAPA:18970;;EV:0100064;;FMA:59762;;GAID:1257;;galen:Gingiva;;http://upload.wikimedia.org/wikipedia/commons/2/2e/Tooth_Section.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Tooth_Section.svg/200px-Tooth_Section.svg.png;;MA:0000342;;MESH:A.14.254.646.480;;ncithesaurus:Gingiva;;OpenCyc:Mx4rvViWnZwpEbGdrcN5Y29ycA;;SCTID:181224006;;VHOG:0001269
|is_a=UBERON:0000479;;UBERON:0004119;;UBERON:0004121
|synonym="gum" EXACT [FMA:59762];;"gum tissue" EXACT [UBERON:cjm]
|comment=AO notes: FMA has gingiva of upper and lower jaw
|comment=AO notes: FMA has gingiva of upper and lower jaw
|alt_id=UBERON:FMA_59762-MA_0000342
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The gingiva, or gums, consists of the mucosal tissue that lies over the alveolar bone. [WP,unvetted]." [Wikipedia:Gingiva]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001828
|is_a=UBERON:0003729
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=gingiva
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0003729;;UBERON:0011595
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="gum" EXACT [FMA:59762];;"gum tissue" EXACT [UBERON:cjm]
|union_of=
|xref=BTO:0000519;;EFO:0001925;;EMAPA:18967;;EMAPA:18970;;EV:0100064;;FMA:59762;;GAID:1257;;galen:Gingiva;;http://upload.wikimedia.org/wikipedia/commons/2/2e/Tooth_Section.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Tooth_Section.svg/200px-Tooth_Section.svg.png;;MA:0000342;;MESH:A.14.254.646.480;;ncithesaurus:Gingiva;;OpenCyc:Mx4rvViWnZwpEbGdrcN5Y29ycA;;SCTID:181224006;;VHOG:0001269
}}
}}

Latest revision as of 17:20, 12 September 2014

Name:gingiva
Namespace:FANTOM
Definition:"The gingiva, or gums, consists of the mucosal tissue that lies over the alveolar bone. [WP,unvetted]." [Wikipedia:Gingiva]
Xrefs:
links:

BTO:0000519
EFO:0001925
EMAPA:18967
EMAPA:18970
EV:0100064
FMA:59762
GAID:1257
galen:Gingiva
[1]
[ 200px-Tooth_Section.svg.png 200px-Tooth_Section.svg.png]
MA:0000342
MESH:A.14.254.646.480
ncithesaurus:Gingiva
OpenCyc:Mx4rvViWnZwpEbGdrcN5Y29ycA
SCTID:181224006

VHOG:0001269
Synonyms: "gum" EXACT [FMA:59762]
"gum tissue" EXACT [UBERON:cjm]
Comments:AO notes: FMA has gingiva of upper and lower jaw
Alt_id: UBERON:FMA_59762-MA_0000342
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003729(mouth mucosa)
part_of:UBERON:0003729(mouth mucosa),UBERON:0011595(jaw region)



Children

part of:UBERON:0001949 (gingival epithelium),CL:0002552 (fibroblast of gingiva)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001828 (gingiva), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.28e-61FFCP PHASE2:Hg19::chr1:75599672..75599682,-#_e06bc67a40ec204c5458e64492b999d1p@chr1:75599672..75599682, -
3.28e-61FFCP PHASE1:Hg19::chr1:75599672..75599682,-#_e06bc67a40ec204c5458e64492b999d1p@chr1:75599672..75599682, -
8.7e-48FFCP PHASE2:Hg19::chr1:75598362..75598407,-#_0b7f4b2971dd97c6e3c77f7f042c8462p1@ENST00000427892, p1@uc001dgp.1
8.7e-48FFCP PHASE1:Hg19::chr1:75598362..75598407,-#_0b7f4b2971dd97c6e3c77f7f042c8462p1@ENST00000427892, p1@uc001dgp.1
7.14e-38FFCP PHASE2:Hg19::chr4:143470541..143470551,+#_f307e5c2072492201af92f3fdaa54f96p@chr4:143470541..143470551, +
7.14e-38FFCP PHASE1:Hg19::chr4:143470541..143470551,+#_f307e5c2072492201af92f3fdaa54f96p@chr4:143470541..143470551, +
6.5e-34FFCP PHASE2:Hg19::chr9:94586900..94586909,-#_de15a3ef955487953463da4176c62bd4p@chr9:94586900..94586909, -
6.5e-34FFCP PHASE1:Hg19::chr9:94586900..94586909,-#_de15a3ef955487953463da4176c62bd4p@chr9:94586900..94586909, -
9.08e-34FFCP PHASE1:Hg19::chr17:73753856..73753871,+#_4f0baad1058ec75f79c6c9ccdf1d89bfp1@CU674593
9.08e-34FFCP PHASE1:Hg19::chr1:14465017..14465026,+#_4f0baad1058ec75f79c6c9ccdf1d89bfp@chr1:14465017..14465026, +
9.08e-34FFCP PHASE2:Hg19::chr1:14465017..14465026,+#_4f0baad1058ec75f79c6c9ccdf1d89bfp@chr1:14465017..14465026, +
9.08e-34FFCP PHASE2:Hg19::chr17:73753856..73753871,+#_4f0baad1058ec75f79c6c9ccdf1d89bfp1@CU674593
1.96e-33FFCP PHASE1:Hg19::chr1:75599683..75599699,-#_d0d8847cfb941cc4f93734b95443a455p@chr1:75599683..75599699, -
1.96e-33FFCP PHASE2:Hg19::chr1:75599683..75599699,-#_d0d8847cfb941cc4f93734b95443a455p@chr1:75599683..75599699, -
1.15e-32FFCP PHASE2:Hg19::chr8:130798890..130798901,-#_68f216d1b529fa006023b5856df72df7p3@GSDMC
1.15e-32FFCP PHASE1:Hg19::chr8:130798890..130798901,-#_68f216d1b529fa006023b5856df72df7p3@GSDMC
1.59e-32FFCP PHASE2:Hg19::chr11:93754560..93754567,+#_afadfd0d03fef26a3a655463903aa77ep@chr11:93754560..93754567, +
1.59e-32FFCP PHASE1:Hg19::chr11:93754560..93754567,+#_afadfd0d03fef26a3a655463903aa77ep@chr11:93754560..93754567, +
2.71e-32FFCP PHASE2:Hg19::chr10:105791095..105791110,-#_cab5e1fec48c681e0803fbcfb57f55d9p@chr10:105791095..105791110, -
2.71e-32FFCP PHASE1:Hg19::chr10:105791095..105791110,-#_cab5e1fec48c681e0803fbcfb57f55d9p@chr10:105791095..105791110, -
1.23e-28FFCP PHASE2:Hg19::chr7:40883542..40883550,+#_64e88ea840e213908b571db1efce1842p@chr7:40883542..40883550, +
1.23e-28FFCP PHASE2:Hg19::chr1:153533849..153533860,-#_64e88ea840e213908b571db1efce1842p@chr1:153533849..153533860, -
1.23e-28FFCP PHASE1:Hg19::chr7:40883542..40883550,+#_64e88ea840e213908b571db1efce1842p@chr7:40883542..40883550, +
1.23e-28FFCP PHASE1:Hg19::chr1:153533849..153533860,-#_64e88ea840e213908b571db1efce1842p@chr1:153533849..153533860, -
1.64e-28FFCP PHASE2:Hg19::chr3:190252374..190252383,-#_d2220503c4d981152ee890967c6a034cp@chr3:190252374..190252383, -
1.64e-28FFCP PHASE1:Hg19::chr3:190252374..190252383,-#_d2220503c4d981152ee890967c6a034cp@chr3:190252374..190252383, -
2.17e-28FFCP PHASE2:Hg19::chr21:44957893..44957903,-#_45514f141087032bc45004442f94e165p@chr21:44957893..44957903, -
2.17e-28FFCP PHASE1:Hg19::chr21:44957893..44957903,-#_45514f141087032bc45004442f94e165p@chr21:44957893..44957903, -
2.38e-28FFCP PHASE1:Hg19::chr1:241577071..241577081,+#_3df02c2a499e90557a793df990a9193ap@chr1:241577071..241577081, +
2.38e-28FFCP PHASE2:Hg19::chr1:241577071..241577081,+#_3df02c2a499e90557a793df990a9193ap@chr1:241577071..241577081, +
2.87e-28FFCP PHASE2:Hg19::chr10:106205489..106205498,+#_af36ac922c644c72fff756dcbabfdc3fp@chr10:106205489..106205498, +
2.87e-28FFCP PHASE1:Hg19::chr10:106205489..106205498,+#_af36ac922c644c72fff756dcbabfdc3fp@chr10:106205489..106205498, +
3.05e-27FFCP PHASE2:Hg19::chr2:172953513..172953549,-#_f945c4b1103da77989f72400420bc328p@chr2:172953513..172953549, -
3.05e-27FFCP PHASE1:Hg19::chr2:172953513..172953549,-#_f945c4b1103da77989f72400420bc328p@chr2:172953513..172953549, -
3.26e-27FFCP PHASE2:Hg19::chr16:70597904..70597915,+#_f449b466d4ad06cbbac000c973bb7f3bp5@SF3B3
3.26e-27FFCP PHASE1:Hg19::chr16:70597904..70597915,+#_f449b466d4ad06cbbac000c973bb7f3bp5@SF3B3
1.11e-25FFCP PHASE2:Hg19::chr12:85306433..85306434,-#_b34b04948c9fbcaeb8086eb3404a9a34p5@SLC6A15
1.11e-25FFCP PHASE1:Hg19::chr15:40531729..40531738,+#_b34b04948c9fbcaeb8086eb3404a9a34p15@PAK6
1.11e-25FFCP PHASE1:Hg19::chr12:85306433..85306434,-#_b34b04948c9fbcaeb8086eb3404a9a34p5@SLC6A15
1.11e-25FFCP PHASE2:Hg19::chr15:40531729..40531738,+#_b34b04948c9fbcaeb8086eb3404a9a34p15@PAK6
1.43e-25FFCP PHASE2:Hg19::chr9:108870138..108870152,+#_3a4b07cf199ec2cc1e4983529fcb4d18p1@uc004bcw.2
1.43e-25FFCP PHASE1:Hg19::chr9:108870138..108870152,+#_3a4b07cf199ec2cc1e4983529fcb4d18p1@uc004bcw.2
2.37e-25FFCP PHASE2:Hg19::chr16:82671490..82671521,+#_f067dff49403485919210bee44504e0ep@chr16:82671490..82671521, +
2.37e-25FFCP PHASE1:Hg19::chr16:82671490..82671521,+#_f067dff49403485919210bee44504e0ep@chr16:82671490..82671521, +
2.8e-25FFCP PHASE2:Hg19::chr1:75600318..75600329,+#_fae9261730ff64db9e1abd3a3da7b080p4@LHX8
2.8e-25FFCP PHASE1:Hg19::chr1:75600318..75600329,+#_fae9261730ff64db9e1abd3a3da7b080p4@LHX8
1.15e-24FFCP PHASE2:Hg19::chr1:75600067..75600094,+#_77d6f01a794e0b342d726f95679c6cbdp2@LHX8
1.15e-24FFCP PHASE1:Hg19::chr1:75600067..75600094,+#_77d6f01a794e0b342d726f95679c6cbdp2@LHX8
7.04e-24FFCP PHASE2:Hg19::chr1:83982415..83982420,+#_2cc593064411e03927a19398ff4716cfp@chr1:83982415..83982420, +
7.04e-24FFCP PHASE1:Hg19::chr1:83982415..83982420,+#_2cc593064411e03927a19398ff4716cfp@chr1:83982415..83982420, +
9.45e-24FFCP PHASE1:Hg19::chr6:1389690..1389700,-#_72713fb12bf89eee892301521d856a91p@chr6:1389690..1389700, -
9.45e-24FFCP PHASE2:Hg19::chr6:1389690..1389700,-#_72713fb12bf89eee892301521d856a91p@chr6:1389690..1389700, -
5.97e-23FFCP PHASE2:Hg19::chr4:152086796..152086808,-#_6609885980d35c8162869bd6eea85cfcp18@SH3D19
5.97e-23FFCP PHASE1:Hg19::chr4:152086796..152086808,-#_6609885980d35c8162869bd6eea85cfcp18@SH3D19
6.43e-23FFCP PHASE2:Hg19::chr11:13030878..13030889,+#_9befc5221fbf1e8770b9e099016590cbp2@RASSF10
6.43e-23FFCP PHASE1:Hg19::chr11:13030878..13030889,+#_9befc5221fbf1e8770b9e099016590cbp2@RASSF10
7.47e-23FFCP PHASE1:Hg19::chr18:20493879..20493891,+#_39d7cd095aebde5c16884e6b8ec693f4p@chr18:20493879..20493891, +
7.47e-23FFCP PHASE2:Hg19::chr18:20493879..20493891,+#_39d7cd095aebde5c16884e6b8ec693f4p@chr18:20493879..20493891, +
8.67e-23FFCP PHASE1:Hg19::chr8:124850358..124850380,+#_677aa38617cc495bb87cfeda96df3cfbp@chr8:124850358..124850380, +
8.67e-23FFCP PHASE2:Hg19::chr8:124850358..124850380,+#_677aa38617cc495bb87cfeda96df3cfbp@chr8:124850358..124850380, +
1.34e-22FFCP PHASE1:Hg19::chr1:75602043..75602093,+#_475dda346052cf0771b6f622714bdd8ep1@LHX8
1.34e-22FFCP PHASE2:Hg19::chr1:75602043..75602093,+#_475dda346052cf0771b6f622714bdd8ep1@LHX8
1.83e-21FFCP PHASE2:Hg19::chr6:148761357..148761368,+#_48cfd8f54c76f51d7ef518fa506cb340p21@SASH1
1.83e-21FFCP PHASE1:Hg19::chr6:148761357..148761368,+#_48cfd8f54c76f51d7ef518fa506cb340p21@SASH1
4.5e-21FFCP PHASE2:Hg19::chr13:30259768..30259777,+#_a8a6ba8671287ed28e61a40fce7a0c8dp@chr13:30259768..30259777, +
4.5e-21FFCP PHASE1:Hg19::chr13:30259768..30259777,+#_a8a6ba8671287ed28e61a40fce7a0c8dp@chr13:30259768..30259777, +
5.91e-21FFCP PHASE2:Hg19::chr5:167247119..167247129,+#_977a3051a5db3c2b1a8205113183bccap@chr5:167247119..167247129, +
5.91e-21FFCP PHASE1:Hg19::chr5:167247119..167247129,+#_977a3051a5db3c2b1a8205113183bccap@chr5:167247119..167247129, +
6.32e-21FFCP PHASE2:Hg19::chr13:75017232..75017235,+#_080f0b443112f75b26b933729e28ffbfp@chr13:75017232..75017235, +
6.32e-21FFCP PHASE1:Hg19::chr13:75017232..75017235,+#_080f0b443112f75b26b933729e28ffbfp@chr13:75017232..75017235, +
6.32e-21FFCP PHASE2:Hg19::chr5:52619638..52619641,+#_080f0b443112f75b26b933729e28ffbfp@chr5:52619638..52619641, +
6.32e-21FFCP PHASE1:Hg19::chr5:52619638..52619641,+#_080f0b443112f75b26b933729e28ffbfp@chr5:52619638..52619641, +
7.35e-21FFCP PHASE1:Hg19::chr18:46607960..46607989,-#_74063dfb95883b65967c4761eaeb06adp@chr18:46607960..46607989, -
7.35e-21FFCP PHASE2:Hg19::chr18:46607960..46607989,-#_74063dfb95883b65967c4761eaeb06adp@chr18:46607960..46607989, -
8.88e-21FFCP PHASE2:Hg19::chr11:129511955..129511961,-#_bfb3a434bcc1c1fa81215b1d8b2695dap@chr11:129511955..129511961, -
8.88e-21FFCP PHASE1:Hg19::chr11:129511955..129511961,-#_bfb3a434bcc1c1fa81215b1d8b2695dap@chr11:129511955..129511961, -
8.98e-21FFCP PHASE1:Hg19::chr3:52440350..52440361,-#_ca147a560215e88bba59b6bc30b6adc0p@chr3:52440350..52440361, -
8.98e-21FFCP PHASE2:Hg19::chr1:183213228..183213235,+#_ca147a560215e88bba59b6bc30b6adc0p@chr1:183213228..183213235, +
8.98e-21FFCP PHASE1:Hg19::chr1:183213228..183213235,+#_ca147a560215e88bba59b6bc30b6adc0p@chr1:183213228..183213235, +
8.98e-21FFCP PHASE2:Hg19::chr3:52440350..52440361,-#_ca147a560215e88bba59b6bc30b6adc0p@chr3:52440350..52440361, -
9.92e-21FFCP PHASE2:Hg19::chr3:170459091..170459101,-#_46567ee4cd2cdad82c24d9702c533c05p4@ENST00000473110
9.92e-21FFCP PHASE2:Hg19::chr12:115777087..115777091,+#_46567ee4cd2cdad82c24d9702c533c05p@chr12:115777087..115777091, +
9.92e-21FFCP PHASE1:Hg19::chr12:115777087..115777091,+#_46567ee4cd2cdad82c24d9702c533c05p@chr12:115777087..115777091, +
9.92e-21FFCP PHASE1:Hg19::chr3:170459091..170459101,-#_46567ee4cd2cdad82c24d9702c533c05p4@ENST00000473110
1.1e-20FFCP PHASE2:Hg19::chr8:130798565..130798567,-#_1d98a123da077f82ced214b8ea9b08e4p4@GSDMC
1.1e-20FFCP PHASE1:Hg19::chr8:130798565..130798567,-#_1d98a123da077f82ced214b8ea9b08e4p4@GSDMC
1.1e-20FFCP PHASE2:Hg19::chr10:5567644..5567657,+#_1d98a123da077f82ced214b8ea9b08e4p@chr10:5567644..5567657, +
1.1e-20FFCP PHASE1:Hg19::chr10:5567644..5567657,+#_1d98a123da077f82ced214b8ea9b08e4p@chr10:5567644..5567657, +
1.21e-20FFCP PHASE2:Hg19::chr10:106205503..106205518,+#_91591066f78519dee260888447087363p@chr10:106205503..106205518, +
1.21e-20FFCP PHASE1:Hg19::chr10:106205503..106205518,+#_91591066f78519dee260888447087363p@chr10:106205503..106205518, +
1.21e-20FFCP PHASE2:Hg19::chr17:73720330..73720338,+#_91591066f78519dee260888447087363p22@ITGB4
1.21e-20FFCP PHASE1:Hg19::chr17:73720330..73720338,+#_91591066f78519dee260888447087363p22@ITGB4
3.09e-19FFCP PHASE2:Hg19::chr19:10665857..10665900,-#_f2f5d153ce0fcce3c43723a6ed6b3ef7p@chr19:10665857..10665900, -
3.09e-19FFCP PHASE1:Hg19::chr19:10665857..10665900,-#_f2f5d153ce0fcce3c43723a6ed6b3ef7p@chr19:10665857..10665900, -
3.29e-19FFCP PHASE2:Hg19::chr11:392625..392628,+#_8a2503314c2f00640f9068b61b9f2ca6p13@PKP3
3.29e-19FFCP PHASE1:Hg19::chr11:392625..392628,+#_8a2503314c2f00640f9068b61b9f2ca6p13@PKP3
3.73e-19FFCP PHASE2:Hg19::chr9:113801625..113801636,-#_2ac93fb0ba9e01edd296261364b4f3a7p29@LPAR1
3.73e-19FFCP PHASE1:Hg19::chr9:113801625..113801636,-#_2ac93fb0ba9e01edd296261364b4f3a7p29@LPAR1
4.43e-18FFCP PHASE2:Hg19::chr4:152086844..152086857,-#_45bb3cf2a3049634655515f71d52ca80p11@SH3D19
4.43e-18FFCP PHASE1:Hg19::chr4:152086844..152086857,-#_45bb3cf2a3049634655515f71d52ca80p11@SH3D19

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001828&oldid=3277296"