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{{UBERON
{{UBERON
|id=UBERON:0003068
|alt_id=UBERON:XAO_0000205-ZFA_0001204
|name=axial mesoderm
|namespace=
|def="The axial mesoderm includes the prechordal mesoderm and the chordamesoderm. It gives rise to the prechordal plate and to the notochord." [GO:0048318, Wikipedia:Chordamesoderm]
|xref=AAO:0011017;;EFO:0003647;;http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png;;TAO:0001204;;VHOG:0000107;;XAO:0000205;;ZFA:0001204
|is_a=UBERON:0005423
|synonym="chordamesoderm" RELATED [Wikipedia:Chordamesoderm]
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:XAO_0000205-ZFA_0001204
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The axial mesoderm includes the prechordal mesoderm and the chordamesoderm. It gives rise to the prechordal plate and to the notochord." [GO:0048318, Wikipedia:Chordamesoderm]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0000926
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003068
|is_a=UBERON:0005423
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=axial mesoderm
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000922;;UBERON:0000926
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="chordamesoderm" RELATED [Wikipedia:Chordamesoderm]
|union_of=
|xref=AAO:0011017;;EFO:0003647;;http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png;;TAO:0001204;;VHOG:0000107;;XAO:0000205;;ZFA:0001204
}}
}}

Latest revision as of 17:36, 12 September 2014

Name:axial mesoderm
Namespace:FANTOM
Definition:"The axial mesoderm includes the prechordal mesoderm and the chordamesoderm. It gives rise to the prechordal plate and to the notochord." [GO:0048318, Wikipedia:Chordamesoderm]
Xrefs:
links:

AAO:0011017
EFO:0003647
[ Gray19_with_color.png Gray19_with_color.png]
[ 200px-Gray19_with_color.png 200px-Gray19_with_color.png]
TAO:0001204
VHOG:0000107
XAO:0000205

ZFA:0001204
Synonyms: "chordamesoderm" RELATED [Wikipedia:Chordamesoderm]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:XAO_0000205-ZFA_0001204
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
develops_from:UBERON:0000926(mesoderm)
part_of:UBERON:0000922(embryo),UBERON:0000926(mesoderm)



Children

part of:UBERON:0003063 (prechordal plate),UBERON:0004880 (chordamesoderm)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003068 (axial mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.26e-98FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_a98165caf0ee5d3e622aff4d7c9e7d28p@chr3:174737010..174737023, +
8.26e-98FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_a98165caf0ee5d3e622aff4d7c9e7d28p@chr3:174737010..174737023, +
3.03e-84FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_c1c1915e40e0472a0c47b082c4ed4689p4@PAX1
3.03e-84FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_c1c1915e40e0472a0c47b082c4ed4689p4@PAX1
2.39e-66FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_29a81d9675e2bea0ae24acf0372d0371p@chr9:33028063..33028067, -
2.39e-66FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_29a81d9675e2bea0ae24acf0372d0371p@chr9:33028063..33028067, -
5.46e-60FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_b6899922443afd6dd5e44f4911f92461p@chr5:30104176..30104187, -
5.46e-60FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_b6899922443afd6dd5e44f4911f92461p@chr5:30104176..30104187, -
9.77e-45FFCP PHASE1:Hg19::chr2:241987807..241987808,+#_349ba244dd67367e6dd5909b7662d005p22@SNED1
9.77e-45FFCP PHASE2:Hg19::chr2:241987807..241987808,+#_349ba244dd67367e6dd5909b7662d005p22@SNED1
6.64e-41FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_4b775ef5d1bcf43d3c7430f7053ab3f0p15@SNED1
6.64e-41FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_4b775ef5d1bcf43d3c7430f7053ab3f0p15@SNED1
1.31e-40FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_e9480a513f0034c5a7e6cf5b1d1b35efp20@CAPZB
1.31e-40FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_e9480a513f0034c5a7e6cf5b1d1b35efp20@CAPZB
1.8e-38FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_6fea0846c10bacd7eeb3614d1bfb025ep@chr2:12248310..12248334, -
1.8e-38FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_6fea0846c10bacd7eeb3614d1bfb025ep@chr2:12248310..12248334, -
2.75e-34FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_d63df439392a9f55d2a7efb5057bb4edp6@SIX4
2.75e-34FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_d63df439392a9f55d2a7efb5057bb4edp6@SIX4
5.96e-34FFCP PHASE2:Hg19::chr13:51101468..51101499,-#_5d6d66677ec9ad4decff48063a0a4b20p1@ENST00000428276
5.96e-34FFCP PHASE2:Hg19::chr4:88727274..88727278,+#_5d6d66677ec9ad4decff48063a0a4b20p@chr4:88727274..88727278, +
5.96e-34FFCP PHASE2:Hg19::chr11:93468399..93468405,-#_5d6d66677ec9ad4decff48063a0a4b20p19@TAF1D, p1@SNORA40
5.96e-34FFCP PHASE1:Hg19::chr13:51101468..51101499,-#_5d6d66677ec9ad4decff48063a0a4b20p1@ENST00000428276
5.96e-34FFCP PHASE1:Hg19::chr4:88727274..88727278,+#_5d6d66677ec9ad4decff48063a0a4b20p@chr4:88727274..88727278, +
5.96e-34FFCP PHASE1:Hg19::chr11:93468399..93468405,-#_5d6d66677ec9ad4decff48063a0a4b20p19@TAF1D, p1@SNORA40
2.09e-33FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_569aadbed74fe2c486fb38a3c493ea2ep4@NKX3-2
2.09e-33FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_569aadbed74fe2c486fb38a3c493ea2ep4@NKX3-2
4.01e-31FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_32bc9bc272e8d896ac49caad8cd1ec1ap19@HDAC9
4.01e-31FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_32bc9bc272e8d896ac49caad8cd1ec1ap19@HDAC9
1.98e-30FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_5ad776d7a138be268922c2f5fe18e838p@chr2:241897125..241897142, -
1.98e-30FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_5ad776d7a138be268922c2f5fe18e838p@chr2:241897125..241897142, -
4.84e-30FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_3eda26a0ada7621f070e73af2781c807p@chr3:80727046..80727051, -
4.84e-30FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_3eda26a0ada7621f070e73af2781c807p@chr3:80727046..80727051, -
7.46e-30FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_7d7d6643cf423d834025a0cd1fc22db6p@chr7:158224707..158224729, -
7.46e-30FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_7d7d6643cf423d834025a0cd1fc22db6p@chr7:158224707..158224729, -
1.48e-29FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_192487e42572e02ba29f1b8ce4a0edbcp@chr1:65888177..65888194, +
1.48e-29FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_192487e42572e02ba29f1b8ce4a0edbcp@chr1:65888177..65888194, +
2.72e-28FFCP PHASE2:Hg19::chr14:100848311..100848321,+#_578da0c670d57b76b14e8548f83a5b2dp5@WDR25
2.72e-28FFCP PHASE1:Hg19::chr14:100848311..100848321,+#_578da0c670d57b76b14e8548f83a5b2dp5@WDR25
3.26e-27FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_2ca621fb6d8207d23743e0dbd493663ap1@MGC27382
3.26e-27FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_2ca621fb6d8207d23743e0dbd493663ap1@MGC27382
6.92e-27FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_33500655fd9b714400ab94da0eebd0c5p@chr1:19778678..19778689, -
6.92e-27FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_33500655fd9b714400ab94da0eebd0c5p@chr1:19778678..19778689, -
1.46e-26FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_ec88ac890c16c6f3129274be063cfba9p18@HDAC9
1.46e-26FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_ec88ac890c16c6f3129274be063cfba9p18@HDAC9
1.74e-26FFCP PHASE2:Hg19::chr4:156129991..156130013,+#_6c3c4e5917d7d78d50af5e72e7d2f49fp2@NPY2R
1.74e-26FFCP PHASE1:Hg19::chr4:156129991..156130013,+#_6c3c4e5917d7d78d50af5e72e7d2f49fp2@NPY2R
7.41e-26FFCP PHASE2:Hg19::chr14:61113228..61113233,-#_e10006e0bd85ce1f9287ec9a3eb57993p@chr14:61113228..61113233, -
7.41e-26FFCP PHASE1:Hg19::chr14:61113228..61113233,-#_e10006e0bd85ce1f9287ec9a3eb57993p@chr14:61113228..61113233, -
2.04e-25FFCP PHASE1:Hg19::chr7:27212374..27212387,-#_4df2eb2578d085143a4ed550771247b7p12@HOXA10
2.04e-25FFCP PHASE2:Hg19::chr7:27212374..27212387,-#_4df2eb2578d085143a4ed550771247b7p12@HOXA10
6.22e-25FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_4f91d0b8d0343f285e4d3a84114325f4p1@uc010aki.1
6.22e-25FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_4f91d0b8d0343f285e4d3a84114325f4p1@uc010aki.1
9.49e-25FFCP PHASE1:Hg19::chr20:21686317..21686350,+#_1008ff510d1d6d8684fc38199d8d2737p1@PAX1
9.49e-25FFCP PHASE2:Hg19::chr20:21686317..21686350,+#_1008ff510d1d6d8684fc38199d8d2737p1@PAX1
4.58e-24FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_dd6e714bd59ce129d09f94c05aef6d10p@chr5:140887761..140887777, +
4.58e-24FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_dd6e714bd59ce129d09f94c05aef6d10p@chr5:140887761..140887777, +
5.35e-24FFCP PHASE1:Hg19::chr20:21686290..21686311,+#_5909306c484b63f6b2b5a2a4823bc5ecp2@PAX1
5.35e-24FFCP PHASE2:Hg19::chr20:21686290..21686311,+#_5909306c484b63f6b2b5a2a4823bc5ecp2@PAX1
8.55e-24FFCP PHASE1:Hg19::chr7:18832759..18832786,+#_83096c91855252c748196226aef1b5c3p16@HDAC9
8.55e-24FFCP PHASE2:Hg19::chr7:18832759..18832786,+#_83096c91855252c748196226aef1b5c3p16@HDAC9
2.01e-23FFCP PHASE1:Hg19::chr4:77068930..77068959,-#_838f6b6b2f66458d0cc34e7196e92ee7p4@NUP54
2.01e-23FFCP PHASE2:Hg19::chr4:77068930..77068959,-#_838f6b6b2f66458d0cc34e7196e92ee7p4@NUP54
2.28e-23FFCP PHASE2:Hg19::chr4:13546632..13546662,-#_3bea5a9b1adbf0154d311c07689aeeeap1@NKX3-2
2.28e-23FFCP PHASE1:Hg19::chr4:13546632..13546662,-#_3bea5a9b1adbf0154d311c07689aeeeap1@NKX3-2
3.27e-23FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_ec643ac9837926013bd65c064eab65e7p3@uc010aki.1
3.27e-23FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_ec643ac9837926013bd65c064eab65e7p3@uc010aki.1
1.25e-22FFCP PHASE1:Hg19::chr1:78695343..78695353,+#_473f4295cdc3dcf67378324d4b320634p2@ENST00000413519
1.25e-22FFCP PHASE2:Hg19::chr1:78695343..78695353,+#_473f4295cdc3dcf67378324d4b320634p2@ENST00000413519
1.46e-22FFCP PHASE2:Hg19::chr9:123239747..123239765,-#_d6e28da0469bbd82e1f14b9f8c8ff95cp12@CDK5RAP2
1.46e-22FFCP PHASE1:Hg19::chr9:123239747..123239765,-#_d6e28da0469bbd82e1f14b9f8c8ff95cp12@CDK5RAP2
9.47e-22FFCP PHASE1:Hg19::chr1:171076859..171076870,+#_939917d962a571d45fb91c4c65fefa4ep@chr1:171076859..171076870, +
9.47e-22FFCP PHASE2:Hg19::chr1:171076859..171076870,+#_939917d962a571d45fb91c4c65fefa4ep@chr1:171076859..171076870, +
1.35e-21FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_be7a20f41a381bf26db007b0dc2cf5a5p@chr7:100202784..100202796, -
1.35e-21FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_be7a20f41a381bf26db007b0dc2cf5a5p@chr7:100202784..100202796, -
3.83e-21FFCP PHASE1:Hg19::chr14:37126814..37126834,+#_5e546b162597356736fbb17905b1ca87p4@PAX9
3.83e-21FFCP PHASE2:Hg19::chr14:37126814..37126834,+#_5e546b162597356736fbb17905b1ca87p4@PAX9
4.02e-21FFCP PHASE2:Hg19::chr3:176765178..176765190,-#_18e360f78f683e105a70c9972ea744c7p@chr3:176765178..176765190, -
4.02e-21FFCP PHASE1:Hg19::chr3:176765178..176765190,-#_18e360f78f683e105a70c9972ea744c7p@chr3:176765178..176765190, -
4.06e-21FFCP PHASE1:Hg19::chr1:19810947..19810977,-#_f1c0f2b974869c9d42c880c3ea0f5589p17@CAPZB
4.06e-21FFCP PHASE2:Hg19::chr1:19810947..19810977,-#_f1c0f2b974869c9d42c880c3ea0f5589p17@CAPZB
5.43e-21FFCP PHASE2:Hg19::chr12:54422268..54422278,+#_fbb6c8ab845b973365beaaa76e1e4dfep8@HOXC6
5.43e-21FFCP PHASE1:Hg19::chr12:54422268..54422278,+#_fbb6c8ab845b973365beaaa76e1e4dfep8@HOXC6
4.94e-20FFCP PHASE2:Hg19::chr17:38613285..38613298,-#_483260326cd5ca65ddf18b2a54568b43p@chr17:38613285..38613298, -
4.94e-20FFCP PHASE1:Hg19::chr17:38613285..38613298,-#_483260326cd5ca65ddf18b2a54568b43p@chr17:38613285..38613298, -
9.53e-20FFCP PHASE1:Hg19::chr20:43343596..43343608,+#_8c85f56bf7418130366d4c8de2445c59p6@WISP2
9.53e-20FFCP PHASE2:Hg19::chr20:43343596..43343608,+#_8c85f56bf7418130366d4c8de2445c59p6@WISP2
1.46e-19FFCP PHASE1:Hg19::chr1:78958320..78958332,+#_4c42f6fde41d0c16c15178c37a99af3ep2@PTGFR
1.46e-19FFCP PHASE2:Hg19::chr1:78958320..78958332,+#_4c42f6fde41d0c16c15178c37a99af3ep2@PTGFR
2.04e-19FFCP PHASE2:Hg19::chr4:70707689..70707711,-#_0ed8f66bb454bf2542fe0e6359bf9a85p@chr4:70707689..70707711, -
2.04e-19FFCP PHASE1:Hg19::chr4:70707689..70707711,-#_0ed8f66bb454bf2542fe0e6359bf9a85p@chr4:70707689..70707711, -
3.75e-19FFCP PHASE2:Hg19::chr14:37126870..37126882,+#_ac16640176f346cac32dfc60743f2592p1@ENST00000555639
3.75e-19FFCP PHASE1:Hg19::chr14:37126870..37126882,+#_ac16640176f346cac32dfc60743f2592p1@ENST00000555639
4.68e-19FFCP PHASE2:Hg19::chr2:12246664..12246694,+#_5b944c8b1a5b9d15ad1563ea33e9d28bp1@ENST00000449986
4.68e-19FFCP PHASE1:Hg19::chr2:12246664..12246694,+#_5b944c8b1a5b9d15ad1563ea33e9d28bp1@ENST00000449986
1.04e-18FFCP PHASE1:Hg19::chr3:158390171..158390180,-#_3059e886734072103aee0784e9f586b5p3@LXN
1.04e-18FFCP PHASE2:Hg19::chr3:158390171..158390180,-#_3059e886734072103aee0784e9f586b5p3@LXN
5.12e-18FFCP PHASE1:Hg19::chr6:112375300..112375334,+#_aa6366ebe7ea8bf2cf2a7290ffc17cb2p1@WISP3
5.12e-18FFCP PHASE2:Hg19::chr6:112375300..112375334,+#_aa6366ebe7ea8bf2cf2a7290ffc17cb2p1@WISP3
9.14e-18FFCP PHASE2:Hg19::chr8:77595678..77595688,+#_ca7de249b4db1c51a39fbdcc9217808ep9@ZFHX4
9.14e-18FFCP PHASE1:Hg19::chr8:77595678..77595688,+#_ca7de249b4db1c51a39fbdcc9217808ep9@ZFHX4

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