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{{UBERON
{{UBERON
|id=UBERON:0003894
|alt_id=
|name=liver primordium
|namespace=
|def="A small endodermal thickening in the foregut adjacent to the transverse septum. Invaginates forming the hepatic diverticulum." [ISBN:3211492755]
|xref=AAO:0011058;;EFO:0003428;;EHDAA2:0000744;;EHDAA:973;;EMAPA:16847;;ncithesaurus:Hepatic_Cord;;ncithesaurus:Primordium_of_the_Liver;;TAO:0000124;;XAO:0003266;;ZFA:0000124
|is_a=UBERON:0001048
|synonym="embryological hepatic plate" EXACT [UBERON:cjm];;"hepatic plate" RELATED [EHDAA2:0000744];;"liver bud" RELATED INCONSISTENT [XAO:0003266, ZFA:0000124];;"primordium of the liver" EXACT [ncithesaurus:Primordium_of_the_Liver]
|comment=Todo - check hepatic plate; check syns
|comment=Todo - check hepatic plate; check syns
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A small endodermal thickening in the foregut adjacent to the transverse septum. Invaginates forming the hepatic diverticulum." [ISBN:3211492755]
|subset=vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0001041
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003894
|is_a=UBERON:0005291 ;;UBERON:0007497 ;;UBERON:0009497
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=liver primordium
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0009550
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=vertebrate_core
|preceded_by=
|synonym="embryological hepatic plate" EXACT [UBERON:cjm];;"hepatic plate" RELATED [EHDAA2:0000744];;"liver bud" RELATED INCONSISTENT [XAO:0003266, ZFA:0000124];;"primordium of the liver" EXACT [ncithesaurus:Primordium_of_the_Liver]
|union_of=
|xref=AAO:0011058;;EFO:0003428;;EHDAA2:0000744;;EHDAA:973;;EMAPA:16847;;ncithesaurus:Hepatic_Cord;;ncithesaurus:Primordium_of_the_Liver;;TAO:0000124;;XAO:0003266;;ZFA:0000124
}}
}}

Latest revision as of 17:41, 12 September 2014

Name:liver primordium
Namespace:FANTOM
Definition:"A small endodermal thickening in the foregut adjacent to the transverse septum. Invaginates forming the hepatic diverticulum." [ISBN:3211492755]
Xrefs:
links:

AAO:0011058
EFO:0003428
EHDAA2:0000744
EHDAA:973
EMAPA:16847
ncithesaurus:Hepatic_Cord
ncithesaurus:Primordium_of_the_Liver
TAO:0000124
XAO:0003266

ZFA:0000124
Synonyms: "embryological hepatic plate" EXACT [UBERON:cjm]
"hepatic plate" RELATED [EHDAA2:0000744]
"liver bud" RELATED INCONSISTENT [XAO:0003266, ZFA:0000124]
"primordium of the liver" EXACT [ncithesaurus:Primordium_of_the_Liver]
Comments:Todo - check hepatic plate; check syns
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005291(embryonic tissue),UBERON:0007497(developing epithelial placode),UBERON:0009497(epithelium of foregut-midgut junction)
develops_from:UBERON:0001041(foregut)
part_of:UBERON:0009550(endoderm of foregut-midgut junction)



Children

develops from:UBERON:0002107 (liver),UBERON:0008835 (hepatic diverticulum)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003894 (liver primordium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.22e-72FFCP PHASE2:Mm9::chr5:90897694..90897705,+#_fa85f6b95f0dcc11c71f44ba1b080e97p@chr5:90897694..90897705, +
1.22e-72FFCP PHASE1:Mm9::chr5:90897694..90897705,+#_fa85f6b95f0dcc11c71f44ba1b080e97p@chr5:90897694..90897705, +
2.2e-72FFCP PHASE1:Mm9::chr19:25169885..25169900,+#_5a05e312168caa084d5a8781bf129c5ap@chr19:25169885..25169900, +
2.2e-72FFCP PHASE2:Mm9::chr19:25169885..25169900,+#_5a05e312168caa084d5a8781bf129c5ap@chr19:25169885..25169900, +
1.13e-71FFCP PHASE2:Hg19::chr12:100867777..100867788,+#_5b4200d20f81e9a6b11da0f28257d183p5@NR1H4
1.13e-71FFCP PHASE1:Hg19::chr12:100867777..100867788,+#_5b4200d20f81e9a6b11da0f28257d183p5@NR1H4
2.32e-71FFCP PHASE1:Hg19::chr8:144417558..144417572,-#_d967fc9b372694ebae9cb8f70ac49366p7@TOP1MT
2.32e-71FFCP PHASE2:Hg19::chr2:21233797..21233804,-#_d967fc9b372694ebae9cb8f70ac49366p58@APOB
2.32e-71FFCP PHASE2:Hg19::chr8:144417558..144417572,-#_d967fc9b372694ebae9cb8f70ac49366p7@TOP1MT
2.32e-71FFCP PHASE1:Hg19::chr2:21233797..21233804,-#_d967fc9b372694ebae9cb8f70ac49366p58@APOB
5.51e-71FFCP PHASE2:Mm9::chr7:121912281..121912295,+#_fdb8fca7a0ec85686d6a43b5fa8b7edcp6@Insc
5.51e-71FFCP PHASE1:Mm9::chr7:121912281..121912295,+#_fdb8fca7a0ec85686d6a43b5fa8b7edcp6@Insc
1.7e-70FFCP PHASE1:Mm9::chr8:131012371..131012382,-#_de984d32426dde767a53bbdab51c25ddp2@uc009nzu.1
1.7e-70FFCP PHASE2:Mm9::chr8:131012371..131012382,-#_de984d32426dde767a53bbdab51c25ddp2@uc009nzu.1
1.28e-68FFCP PHASE1:Mm9::chr13:94407586..94407604,-#_ae896be15ec7031023164dcbb1a15061p5@Bhmt
1.28e-68FFCP PHASE2:Mm9::chr13:94407586..94407604,-#_ae896be15ec7031023164dcbb1a15061p5@Bhmt
2.27e-68FFCP PHASE1:Hg19::chr2:201171064..201171071,+#_9417144c196a2b23c0cc1c87b3a68235p19@SPATS2L
2.27e-68FFCP PHASE2:Hg19::chr2:201171064..201171071,+#_9417144c196a2b23c0cc1c87b3a68235p19@SPATS2L
2.72e-68FFCP PHASE2:Mm9::chr1:162917234..162917248,+#_ba424c647d68590dedc2947533277ac6p@chr1:162917234..162917248, +
2.72e-68FFCP PHASE1:Mm9::chr1:162917234..162917248,+#_ba424c647d68590dedc2947533277ac6p@chr1:162917234..162917248, +
3.5e-68FFCP PHASE1:Mm9::chr9:110892216..110892232,-#_ae660e028d8169034964c0684f7231ddp1@Rtp3
3.5e-68FFCP PHASE2:Mm9::chr9:110892216..110892232,-#_ae660e028d8169034964c0684f7231ddp1@Rtp3
2.47e-67FFCP PHASE1:Mm9::chr9:110892239..110892252,-#_a59716f9950309321b78441b9a22806fp2@Rtp3
2.47e-67FFCP PHASE2:Mm9::chr9:110892239..110892252,-#_a59716f9950309321b78441b9a22806fp2@Rtp3
2.47e-67FFCP PHASE2:Mm9::chr7:112744083..112744109,-#_a59716f9950309321b78441b9a22806fp@chr7:112744083..112744109, -
2.47e-67FFCP PHASE1:Mm9::chr7:112744083..112744109,-#_a59716f9950309321b78441b9a22806fp@chr7:112744083..112744109, -
6.55e-67FFCP PHASE2:Mm9::chr13:23928766..23928779,+#_c099940f77e944dd3e3b80e0927ac927p@chr13:23928766..23928779, +
6.55e-67FFCP PHASE1:Mm9::chr13:23928766..23928779,+#_c099940f77e944dd3e3b80e0927ac927p@chr13:23928766..23928779, +
7.85e-67FFCP PHASE1:Mm9::chr7:28237436..28237488,+#_694640ea0f6deb669a665447acc6c77bp3@Blvrb
7.85e-67FFCP PHASE2:Mm9::chr7:28237436..28237488,+#_694640ea0f6deb669a665447acc6c77bp3@Blvrb
1.58e-66FFCP PHASE2:Mm9::chr16:22894900..22894910,+#_6ca345073df9eeedc4674de83599445ap@chr16:22894900..22894910, +
1.58e-66FFCP PHASE1:Mm9::chr2:10041210..10041222,-#_6ca345073df9eeedc4674de83599445ap@chr2:10041210..10041222, -
1.58e-66FFCP PHASE1:Mm9::chr12:105004018..105004046,-#_6ca345073df9eeedc4674de83599445ap@chr12:105004018..105004046, -
1.58e-66FFCP PHASE1:Mm9::chr16:22898981..22898988,-#_6ca345073df9eeedc4674de83599445ap@chr16:22898981..22898988, -
1.58e-66FFCP PHASE2:Mm9::chr6:128436166..128436185,-#_6ca345073df9eeedc4674de83599445ap@chr6:128436166..128436185, -
1.58e-66FFCP PHASE1:Mm9::chr16:22894900..22894910,+#_6ca345073df9eeedc4674de83599445ap@chr16:22894900..22894910, +
1.58e-66FFCP PHASE1:Mm9::chr6:128436166..128436185,-#_6ca345073df9eeedc4674de83599445ap@chr6:128436166..128436185, -
1.58e-66FFCP PHASE2:Mm9::chr2:10041210..10041222,-#_6ca345073df9eeedc4674de83599445ap@chr2:10041210..10041222, -
1.58e-66FFCP PHASE2:Mm9::chr12:105004018..105004046,-#_6ca345073df9eeedc4674de83599445ap@chr12:105004018..105004046, -
1.58e-66FFCP PHASE2:Mm9::chr16:22898981..22898988,-#_6ca345073df9eeedc4674de83599445ap@chr16:22898981..22898988, -
1.39e-65FFCP PHASE1:Hg19::chrX:153769426..153769436,+#_01dffb21dd9ee303c19039f28681115fp18@IKBKG
1.39e-65FFCP PHASE2:Hg19::chrX:153769426..153769436,+#_01dffb21dd9ee303c19039f28681115fp18@IKBKG
2.18e-65FFCP PHASE2:Hg19::chr10:7745167..7745178,+#_796072a4d73929fe838318969d3035e9p3@ITIH2
2.18e-65FFCP PHASE1:Hg19::chr10:7745167..7745178,+#_796072a4d73929fe838318969d3035e9p3@ITIH2
3.98e-65FFCP PHASE1:Hg19::chr2:97216132..97216143,+#_d60393994ff67c632c88b9ee44832792p@chr2:97216132..97216143, +
3.98e-65FFCP PHASE2:Hg19::chr2:97216132..97216143,+#_d60393994ff67c632c88b9ee44832792p@chr2:97216132..97216143, +
1.17e-64FFCP PHASE1:Mm9::chr1:173155793..173155841,+#_d3c00c58944a63f2870f8e005a4f7ccep@chr1:173155793..173155841, +
1.17e-64FFCP PHASE2:Mm9::chr1:173155793..173155841,+#_d3c00c58944a63f2870f8e005a4f7ccep@chr1:173155793..173155841, +
1.34e-64FFCP PHASE1:Mm9::chr17:12588483..12588503,+#_a8ee5b893927d337c57263b3bcf6eb3ap@chr17:12588483..12588503, +
1.34e-64FFCP PHASE2:Mm9::chr17:12588483..12588503,+#_a8ee5b893927d337c57263b3bcf6eb3ap@chr17:12588483..12588503, +
1.38e-64FFCP PHASE2:Mm9::chr17:12584645..12584657,+#_09e1c8ef92cd5b829c27791243e5ccd6p@chr17:12584645..12584657, +
1.38e-64FFCP PHASE1:Mm9::chr17:12584645..12584657,+#_09e1c8ef92cd5b829c27791243e5ccd6p@chr17:12584645..12584657, +
1.62e-64FFCP PHASE2:Mm9::chr1:166179426..166179437,+#_8a65f97733e080ace4020fff2e4ad61ep@chr1:166179426..166179437, +
1.62e-64FFCP PHASE1:Mm9::chr1:166179426..166179437,+#_8a65f97733e080ace4020fff2e4ad61ep@chr1:166179426..166179437, +
1.68e-64FFCP PHASE1:Mm9::chr8:34917332..34917357,-#_e1c34b365eb25fd9250dac77227169efp@chr8:34917332..34917357, -
1.68e-64FFCP PHASE2:Mm9::chr8:34917332..34917357,-#_e1c34b365eb25fd9250dac77227169efp@chr8:34917332..34917357, -
4.38e-64FFCP PHASE2:Mm9::chr19:38191263..38191291,-#_d1110bb66928b85480550e5142f3a53dp@chr19:38191263..38191291, -
4.38e-64FFCP PHASE1:Mm9::chr19:38191263..38191291,-#_d1110bb66928b85480550e5142f3a53dp@chr19:38191263..38191291, -
9.3e-64FFCP PHASE2:Mm9::chr7:121912266..121912277,+#_5d9ee83b9ea5337099f374b7b04a5708p8@Insc
9.3e-64FFCP PHASE1:Mm9::chr7:121912266..121912277,+#_5d9ee83b9ea5337099f374b7b04a5708p8@Insc
1.1e-63FFCP PHASE1:Mm9::chr5:90893974..90893978,+#_c293b6476db5dbf0627b7810bf4e291fp@chr5:90893974..90893978, +
1.1e-63FFCP PHASE2:Mm9::chr5:90893974..90893978,+#_c293b6476db5dbf0627b7810bf4e291fp@chr5:90893974..90893978, +
1.7e-63FFCP PHASE2:Mm9::chr8:131012475..131012492,-#_06d126712f8fa5bb001e217ee875e176p1@uc009nzu.1
1.7e-63FFCP PHASE1:Mm9::chr8:131012475..131012492,-#_06d126712f8fa5bb001e217ee875e176p1@uc009nzu.1
1.72e-63FFCP PHASE2:Hg19::chr2:21239379..21239390,-#_0823670f4ef55cfb3f5ba51fe0be93a7p@chr2:21239379..21239390, -
1.72e-63FFCP PHASE2:Hg19::chr20:22566089..22566097,-#_0823670f4ef55cfb3f5ba51fe0be93a7p6@FOXA2
1.72e-63FFCP PHASE1:Hg19::chr2:21228233..21228242,-#_0823670f4ef55cfb3f5ba51fe0be93a7p56@APOB
1.72e-63FFCP PHASE2:Hg19::chr10:82049381..82049384,-#_0823670f4ef55cfb3f5ba51fe0be93a7p9@MAT1A
1.72e-63FFCP PHASE1:Hg19::chr2:21239379..21239390,-#_0823670f4ef55cfb3f5ba51fe0be93a7p@chr2:21239379..21239390, -
1.72e-63FFCP PHASE1:Hg19::chr20:10349456..10349475,-#_0823670f4ef55cfb3f5ba51fe0be93a7p1@ENST00000421143
1.72e-63FFCP PHASE2:Hg19::chr20:10349456..10349475,-#_0823670f4ef55cfb3f5ba51fe0be93a7p1@ENST00000421143
1.72e-63FFCP PHASE1:Hg19::chr2:21258509..21258518,-#_0823670f4ef55cfb3f5ba51fe0be93a7p@chr2:21258509..21258518, -
1.72e-63FFCP PHASE1:Hg19::chr10:82049381..82049384,-#_0823670f4ef55cfb3f5ba51fe0be93a7p9@MAT1A
1.72e-63FFCP PHASE2:Hg19::chr2:21228233..21228242,-#_0823670f4ef55cfb3f5ba51fe0be93a7p56@APOB
1.72e-63FFCP PHASE2:Hg19::chr2:21258509..21258518,-#_0823670f4ef55cfb3f5ba51fe0be93a7p@chr2:21258509..21258518, -
1.72e-63FFCP PHASE1:Hg19::chr20:22566089..22566097,-#_0823670f4ef55cfb3f5ba51fe0be93a7p6@FOXA2
1.85e-63FFCP PHASE2:Mm9::chr8:46380208..46380217,-#_fbefce146653d12b0e199388857e8d17p3@Klkb1
1.85e-63FFCP PHASE1:Mm9::chr8:46380208..46380217,-#_fbefce146653d12b0e199388857e8d17p3@Klkb1
2.02e-63FFCP PHASE1:Hg19::chr1:230846000..230846009,-#_369344b0ea4b81c269d170b9647a9ea9p@chr1:230846000..230846009, -
2.02e-63FFCP PHASE1:Mm9::chr3:57191661..57191672,-#_369344b0ea4b81c269d170b9647a9ea9p@chr3:57191661..57191672, -
2.02e-63FFCP PHASE2:Hg19::chr14:94844853..94844862,-#_369344b0ea4b81c269d170b9647a9ea9p35@SERPINA1
2.02e-63FFCP PHASE1:Hg19::chr14:94844853..94844862,-#_369344b0ea4b81c269d170b9647a9ea9p35@SERPINA1
2.02e-63FFCP PHASE2:Hg19::chr1:230846000..230846009,-#_369344b0ea4b81c269d170b9647a9ea9p@chr1:230846000..230846009, -
2.02e-63FFCP PHASE2:Mm9::chr3:57191661..57191672,-#_369344b0ea4b81c269d170b9647a9ea9p@chr3:57191661..57191672, -
2.18e-63FFCP PHASE2:Mm9::chr17:12583153..12583171,+#_67b668ccf0ad465e6601f97f6c3a516ep@chr17:12583153..12583171, +
2.18e-63FFCP PHASE1:Mm9::chr17:12583153..12583171,+#_67b668ccf0ad465e6601f97f6c3a516ep@chr17:12583153..12583171, +
2.2e-63FFCP PHASE2:Mm9::chr3:82814412..82814431,+#_be281b8d690380df1c60c6ea7012c94cp@chr3:82814412..82814431, +
2.2e-63FFCP PHASE1:Mm9::chr3:82814412..82814431,+#_be281b8d690380df1c60c6ea7012c94cp@chr3:82814412..82814431, +
3.67e-63FFCP PHASE1:Mm9::chr5:93000570..93000589,+#_6e4cfd816b604bcc41519136d52ca031p3@Fam47e
3.67e-63FFCP PHASE2:Mm9::chr5:93000570..93000589,+#_6e4cfd816b604bcc41519136d52ca031p3@Fam47e
3.85e-63FFCP PHASE2:Hg19::chr1:177939154..177939204,-#_221a98ff3815db302647166d74c07f2cp4@SEC16B
3.85e-63FFCP PHASE1:Hg19::chr1:177939154..177939204,-#_221a98ff3815db302647166d74c07f2cp4@SEC16B
5.17e-63FFCP PHASE1:Mm9::chr16:23449901..23449906,-#_3fb365edc2ff3ccbfb00cb0f663203ccp@chr16:23449901..23449906, -
5.17e-63FFCP PHASE1:Mm9::chr3:82835513..82835525,+#_3fb365edc2ff3ccbfb00cb0f663203ccp@chr3:82835513..82835525, +
5.17e-63FFCP PHASE2:Mm9::chr8:92849825..92849837,-#_3fb365edc2ff3ccbfb00cb0f663203ccp@chr8:92849825..92849837, -
5.17e-63FFCP PHASE2:Mm9::chr3:82835513..82835525,+#_3fb365edc2ff3ccbfb00cb0f663203ccp@chr3:82835513..82835525, +
5.17e-63FFCP PHASE1:Mm9::chr8:92849825..92849837,-#_3fb365edc2ff3ccbfb00cb0f663203ccp@chr8:92849825..92849837, -
5.17e-63FFCP PHASE1:Mm9::chr16:22895330..22895339,-#_3fb365edc2ff3ccbfb00cb0f663203ccp@chr16:22895330..22895339, -
5.17e-63FFCP PHASE1:Mm9::chr15:77605636..77605639,+#_3fb365edc2ff3ccbfb00cb0f663203ccp@chr15:77605636..77605639, +
5.17e-63FFCP PHASE2:Mm9::chr15:77605636..77605639,+#_3fb365edc2ff3ccbfb00cb0f663203ccp@chr15:77605636..77605639, +

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