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{{UBERON
{{UBERON
|id=UBERON:0007844
|alt_id=
|name=cartilaginous element
|namespace=
|def="Skeletal element that is composed of cartilage tissue and may be permanent or transient." [VSAO:curator]
|xref=AAO:0011130;;FMA:55107;;VSAO:0000000;;XAO:0004013;;ZFA:0001501
|is_a=UBERON:0004765
|synonym="cartilage" RELATED [VSAO:0000000];;"cartilage element" EXACT [];;"cartilage organ" EXACT [FMA:55107];;"chondrogenic element" EXACT [VSAO:0000000]
|comment=AO notes: TAO still mixes tissue and element
|comment=AO notes: TAO still mixes tissue and element
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Skeletal element that is composed of cartilage tissue and may be permanent or transient." [VSAO:curator]
|subset=organ_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0005863
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0007844
|is_a=UBERON:0004765
|is_obsolete=
|located_in=
|located_in=
|name=cartilage element
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=organ_slim
|preceded_by=
|synonym="cartilage" RELATED [VSAO:0000000];;"cartilage element" EXACT [];;"cartilage organ" EXACT [FMA:55107];;"chondrogenic element" EXACT [VSAO:0000000]
|union_of=
|xref=AAO:0011130;;FMA:55107;;VSAO:0000000;;XAO:0004013;;ZFA:0001501
}}
}}

Latest revision as of 18:03, 12 September 2014

Name:cartilage element
Namespace:FANTOM
Definition:"Skeletal element that is composed of cartilage tissue and may be permanent or transient." [VSAO:curator]
Xrefs:
links:

AAO:0011130
FMA:55107
VSAO:0000000
XAO:0004013

ZFA:0001501
Synonyms: "cartilage" RELATED [VSAO:0000000]
"cartilage element" EXACT []
"cartilage organ" EXACT [FMA:55107]
"chondrogenic element" EXACT [VSAO:0000000]
Comments:AO notes: TAO still mixes tissue and element
Subset: organ_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004765(skeletal element)
develops_from:UBERON:0005863(cartilaginous condensation)



Children

is a:UBERON:0010885 (hindlimb cartilage element),UBERON:0011135 (intervertebral cartilage)
develops from:UBERON:0002513 (endochondral bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007844 (cartilage element), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data