UBERON:0010317: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0010317
|name=germ layer / neural crest derived structure
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|is_a=UBERON:0000061
|synonym=
|comment=Grouping term for query ...") |
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|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0010316 | ||
|has_quality= | |has_quality= | ||
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Latest revision as of 13:45, 27 June 2012
| Name: | germ layer / neural crest derived structure |
|---|---|
| Comments: | Grouping term for query purposes |
| Subset: | grouping_class |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000061(anatomical structure) |
|---|---|
| develops_from: | UBERON:0010316(germ layer / neural crest) |
Children
NA
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10012-101C3 (brain, adult, pool1)
- 10013-101C4 (cervix, adult, pool1)
- 10014-101C5 (colon, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10018-101C9 (liver, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
- 10021-101D3 (placenta, adult, pool1)
- 10022-101D4 (prostate, adult, pool1)
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10012-101C3 (brain, adult, pool1)
- 10013-101C4 (cervix, adult, pool1)
- 10014-101C5 (colon, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10018-101C9 (liver, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
- 10021-101D3 (placenta, adult, pool1)
- 10022-101D4 (prostate, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010317 (germ layer / neural crest derived structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 7.5e-31 | FFCP PHASE1:Hg19::chr20:23618584..23618603,-#_425229fb6d6f34b2c61208b39c2763d6 | p1@CST3 |
| 7.5e-31 | FFCP PHASE2:Hg19::chr20:23618584..23618603,-#_425229fb6d6f34b2c61208b39c2763d6 | p1@CST3 |
| 6.91e-29 | FFCP PHASE2:Hg19::chr13:77460532..77460548,-#_1f05e919b8cae9d10d9d66764655e304 | p1@KCTD12 |
| 6.91e-29 | FFCP PHASE1:Hg19::chr13:77460532..77460548,-#_1f05e919b8cae9d10d9d66764655e304 | p1@KCTD12 |
| 1.31e-28 | FFCP PHASE2:Hg19::chr13:45010939..45011033,-#_6697c07114fc5b66e5fdfcffb8862a4a | p1@TSC22D1 |
| 1.31e-28 | FFCP PHASE1:Hg19::chr13:45010939..45011033,-#_6697c07114fc5b66e5fdfcffb8862a4a | p1@TSC22D1 |
| 6.82e-28 | FFCP PHASE1:Hg19::chr2:230135937..230136016,-#_fb12e16508bccc263a72abb407d143e0 | p1@PID1 |
| 6.82e-28 | FFCP PHASE2:Hg19::chr2:230135937..230136016,-#_fb12e16508bccc263a72abb407d143e0 | p1@PID1 |
| 1.74e-26 | FFCP PHASE2:Hg19::chr7:111846435..111846471,-#_2519b24698f114c037024f1b251f80ff | p1@DOCK4 |
| 1.74e-26 | FFCP PHASE1:Hg19::chr7:111846435..111846471,-#_2519b24698f114c037024f1b251f80ff | p1@DOCK4 |
| 4.12e-26 | FFCP PHASE2:Hg19::chr11:1330834..1330875,-#_f845e7b6c233c69359c09fee9461bc70 | p1@TOLLIP |
| 4.12e-26 | FFCP PHASE1:Hg19::chr11:1330834..1330875,-#_f845e7b6c233c69359c09fee9461bc70 | p1@TOLLIP |
| 6.68e-25 | FFCP PHASE1:Hg19::chr12:112204714..112204781,+#_c0b0b9d469f530ced7809f588b7d5243 | p1@ALDH2 |
| 6.68e-25 | FFCP PHASE2:Hg19::chr12:112204714..112204781,+#_c0b0b9d469f530ced7809f588b7d5243 | p1@ALDH2 |
| 6.83e-25 | FFCP PHASE2:Hg19::chr13:77460594..77460613,-#_cb5103bd5f204f64654dd1dc62c2f28d | p3@KCTD12 |
| 6.83e-25 | FFCP PHASE1:Hg19::chr13:77460594..77460613,-#_cb5103bd5f204f64654dd1dc62c2f28d | p3@KCTD12 |
| 1.27e-24 | FFCP PHASE2:Hg19::chr4:85887789..85887862,-#_0140ee664bd4465a8e63355127cbfc39 | p1@WDFY3 |
| 1.27e-24 | FFCP PHASE1:Hg19::chr4:85887789..85887862,-#_0140ee664bd4465a8e63355127cbfc39 | p1@WDFY3 |
| 6.07e-24 | FFCP PHASE2:Hg19::chr16:4852616..4852679,-#_7af81dcec2d9ea9ea5f7c6cfc77c0d0f | p1@ROGDI |
| 6.07e-24 | FFCP PHASE1:Hg19::chr16:4852616..4852679,-#_7af81dcec2d9ea9ea5f7c6cfc77c0d0f | p1@ROGDI |
| 1.62e-23 | FFCP PHASE2:Hg19::chr1:183774240..183774270,+#_cb73ba6896a21954b59dc68394451070 | p1@RGL1 |
| 1.62e-23 | FFCP PHASE1:Hg19::chr1:183774240..183774270,+#_cb73ba6896a21954b59dc68394451070 | p1@RGL1 |
| 2.33e-23 | FFCP PHASE2:Hg19::chr8:30670289..30670354,-#_bdffa9ecada4c39a70e1cca383180c4f | p1@PPP2CB |
| 2.33e-23 | FFCP PHASE1:Hg19::chr8:30670289..30670354,-#_bdffa9ecada4c39a70e1cca383180c4f | p1@PPP2CB |
| 2.57e-23 | FFCP PHASE1:Hg19::chr13:77460635..77460654,-#_662347944b9ffc668cfdc1853e818a5a | p2@KCTD12 |
| 2.57e-23 | FFCP PHASE2:Hg19::chr13:77460635..77460654,-#_662347944b9ffc668cfdc1853e818a5a | p2@KCTD12 |
| 4.06e-23 | FFCP PHASE2:Hg19::chr4:159094160..159094185,-#_e4ea4b9c04fcdeeadbb6ecaed1c7f77e | p2@FAM198B |
| 4.06e-23 | FFCP PHASE1:Hg19::chr4:159094160..159094185,-#_e4ea4b9c04fcdeeadbb6ecaed1c7f77e | p2@FAM198B |
| 6.15e-23 | FFCP PHASE2:Hg19::chr15:90456156..90456198,-#_471370ed470123c458d42c52946296df | p1@C15orf38 |
| 6.15e-23 | FFCP PHASE1:Hg19::chr15:90456156..90456198,-#_471370ed470123c458d42c52946296df | p1@C15orf38 |
| 7.82e-23 | FFCP PHASE1:Hg19::chr19:40871734..40871809,+#_771bc6dcd7bd7e8ab13d1e40777a8c2f | p1@PLD3 |
| 7.82e-23 | FFCP PHASE2:Hg19::chr19:40871734..40871809,+#_771bc6dcd7bd7e8ab13d1e40777a8c2f | p1@PLD3 |
| 1.53e-22 | FFCP PHASE2:Hg19::chr16:2563989..2564006,+#_0bca459dd18995532ea1877c18f98b7d | p2@ATP6V0C |
| 1.53e-22 | FFCP PHASE1:Hg19::chr16:2563989..2564006,+#_0bca459dd18995532ea1877c18f98b7d | p2@ATP6V0C |
| 2.37e-22 | FFCP PHASE2:Hg19::chr20:35974484..35974529,+#_0d9e9e33390e3197e8dd2fb3906397a8 | p2@SRC |
| 2.37e-22 | FFCP PHASE1:Hg19::chr20:35974484..35974529,+#_0d9e9e33390e3197e8dd2fb3906397a8 | p2@SRC |
| 5.65e-22 | FFCP PHASE2:Hg19::chr11:65082349..65082378,+#_a5982129f655b0dee884552542acc082 | p1@CDC42EP2 |
| 5.65e-22 | FFCP PHASE1:Hg19::chr11:65082349..65082378,+#_a5982129f655b0dee884552542acc082 | p1@CDC42EP2 |
| 5.66e-22 | FFCP PHASE1:Hg19::chr17:1466030..1466129,-#_5634bcce893ce4b4c7a3f44f3f286c4d | p1@PITPNA |
| 5.66e-22 | FFCP PHASE2:Hg19::chr17:1466030..1466129,-#_5634bcce893ce4b4c7a3f44f3f286c4d | p1@PITPNA |
| 5.93e-22 | FFCP PHASE1:Hg19::chr19:6720653..6720670,-#_0f4600d72a8ecf25d7fd6b32b1d536ad | p1@C3 |
| 5.93e-22 | FFCP PHASE2:Hg19::chr19:6720653..6720670,-#_0f4600d72a8ecf25d7fd6b32b1d536ad | p1@C3 |
| 6.18e-22 | FFCP PHASE2:Hg19::chr7:2671611..2671658,+#_5d5a382e643b65ae77cc23f80c036c71 | p2@TTYH3 |
| 6.18e-22 | FFCP PHASE1:Hg19::chr7:2671611..2671658,+#_5d5a382e643b65ae77cc23f80c036c71 | p2@TTYH3 |
| 1.1e-21 | FFCP PHASE1:Hg19::chr2:127864839..127864888,-#_1d38ba531c9c47b2d29defb659327baf | p2@BIN1 |
| 1.1e-21 | FFCP PHASE2:Hg19::chr2:127864839..127864888,-#_1d38ba531c9c47b2d29defb659327baf | p2@BIN1 |
| 2.41e-21 | FFCP PHASE1:Hg19::chr17:73851380..73851427,-#_f5009c9bff4a50a1e266fb1c6ca2dc4b | p1@WBP2 |
| 2.41e-21 | FFCP PHASE2:Hg19::chr17:73851380..73851427,-#_f5009c9bff4a50a1e266fb1c6ca2dc4b | p1@WBP2 |
| 3.59e-21 | FFCP PHASE2:Hg19::chr22:31003154..31003188,+#_4e213b4624d9a391af64dde9fa73b2de | p1@TCN2 |
| 3.59e-21 | FFCP PHASE1:Hg19::chr22:31003154..31003188,+#_4e213b4624d9a391af64dde9fa73b2de | p1@TCN2 |
| 3.69e-21 | FFCP PHASE2:Hg19::chr9:14314566..14314618,-#_072f261423bedcbf4060eeb9f16780e5 | p1@NFIB |
| 3.69e-21 | FFCP PHASE1:Hg19::chr9:14314566..14314618,-#_072f261423bedcbf4060eeb9f16780e5 | p1@NFIB |
| 4.02e-21 | FFCP PHASE1:Hg19::chr9:14314131..14314147,-#_4532b0282cf11749273472687a4e83b8 | p2@NFIB |
| 4.02e-21 | FFCP PHASE2:Hg19::chr9:14314131..14314147,-#_4532b0282cf11749273472687a4e83b8 | p2@NFIB |
| 4.54e-21 | FFCP PHASE2:Hg19::chr19:44100155..44100211,-#_b5a57d334a8d532945b5497ebd864a13 | p1@IRGQ |
| 4.54e-21 | FFCP PHASE1:Hg19::chr19:44100155..44100211,-#_b5a57d334a8d532945b5497ebd864a13 | p1@IRGQ |
| 5.7e-21 | FFCP PHASE2:Hg19::chr4:24914581..24914691,-#_9aa68c4d3bf479707277b4bc210bdd33 | p1@CCDC149 |
| 5.7e-21 | FFCP PHASE1:Hg19::chr4:24914581..24914691,-#_9aa68c4d3bf479707277b4bc210bdd33 | p1@CCDC149 |
| 6.27e-21 | FFCP PHASE2:Hg19::chr2:127864608..127864688,-#_a499758118d35816a18d52f9e349f79f | p1@BIN1 |
| 6.27e-21 | FFCP PHASE1:Hg19::chr2:127864608..127864688,-#_a499758118d35816a18d52f9e349f79f | p1@BIN1 |
| 1.02e-20 | FFCP PHASE2:Hg19::chr19:14228541..14228582,-#_cdcf666b450173cc237df8fcaa94c410 | p1@PRKACA |
| 1.02e-20 | FFCP PHASE1:Hg19::chr19:14228541..14228582,-#_cdcf666b450173cc237df8fcaa94c410 | p1@PRKACA |
| 1.29e-20 | FFCP PHASE1:Hg19::chr16:89787269..89787359,-#_2b04a9561412918731b841cb6fc9b448 | p1@C16orf7 |
| 1.29e-20 | FFCP PHASE2:Hg19::chr16:89787269..89787359,-#_2b04a9561412918731b841cb6fc9b448 | p1@C16orf7 |
| 1.45e-20 | FFCP PHASE1:Hg19::chr1:10270620..10270637,+#_9ac1d9cd9ca2a1766f35036ba46c0c7a | p1@KIF1B |
| 1.45e-20 | FFCP PHASE2:Hg19::chr1:10270620..10270637,+#_9ac1d9cd9ca2a1766f35036ba46c0c7a | p1@KIF1B |
| 2.63e-20 | FFCP PHASE1:Hg19::chr18:59561635..59561651,-#_0a9b271f1bb673743d930d637c07af3c | p@chr18:59561635..59561651, - |
| 2.63e-20 | FFCP PHASE2:Hg19::chr18:59561635..59561651,-#_0a9b271f1bb673743d930d637c07af3c | p@chr18:59561635..59561651, - |
| 3.08e-20 | FFCP PHASE1:Hg19::chr12:52345448..52345532,+#_83a85840b1bf3748e7ca56229cc01229 | p1@ACVR1B |
| 3.08e-20 | FFCP PHASE2:Hg19::chr12:52345448..52345532,+#_83a85840b1bf3748e7ca56229cc01229 | p1@ACVR1B |
| 3.96e-20 | FFCP PHASE1:Hg19::chr20:23614485..23614564,-#_2ca44ad20fb4982a397f08aa89b9632e | p@chr20:23614485..23614564, - |
| 3.96e-20 | FFCP PHASE2:Hg19::chr20:23614485..23614564,-#_2ca44ad20fb4982a397f08aa89b9632e | p@chr20:23614485..23614564, - |
| 5.35e-20 | FFCP PHASE2:Hg19::chr1:68698197..68698214,-#_29dded4b719f40db810cd9be91708295 | p1@WLS |
| 5.35e-20 | FFCP PHASE1:Hg19::chr1:68698197..68698214,-#_29dded4b719f40db810cd9be91708295 | p1@WLS |
| 6.51e-20 | FFCP PHASE1:Hg19::chr10:30025922..30025958,-#_c89b2e652ae22f77efd01a46f7a00f8e | p3@SVIL |
| 6.51e-20 | FFCP PHASE2:Hg19::chr10:30025922..30025958,-#_c89b2e652ae22f77efd01a46f7a00f8e | p3@SVIL |
| 6.99e-20 | FFCP PHASE1:Hg19::chr15:64995399..64995422,-#_1e8da3dcf59aa175d5c1dfc27b0f0ff7 | p1@OAZ2 |
| 6.99e-20 | FFCP PHASE2:Hg19::chr15:64995399..64995422,-#_1e8da3dcf59aa175d5c1dfc27b0f0ff7 | p1@OAZ2 |
| 8.06e-20 | FFCP PHASE2:Hg19::chr9:34989685..34989748,+#_c45114d8ab3acb18cad7ea64917b251c | p1@DNAJB5 |
| 8.06e-20 | FFCP PHASE1:Hg19::chr9:34989685..34989748,+#_c45114d8ab3acb18cad7ea64917b251c | p1@DNAJB5 |
| 9.9e-20 | FFCP PHASE2:Hg19::chrX:100333858..100333876,+#_0c7ec46fe5e2abacf2eecfca493d9e80 | p1@TMEM35 |
| 9.9e-20 | FFCP PHASE1:Hg19::chrX:100333858..100333876,+#_0c7ec46fe5e2abacf2eecfca493d9e80 | p1@TMEM35 |
| 1.09e-19 | FFCP PHASE2:Hg19::chr16:2563941..2563983,+#_d7bce5d765645885162383760a6840f8 | p1@ATP6V0C |
| 1.09e-19 | FFCP PHASE1:Hg19::chr16:2563941..2563983,+#_d7bce5d765645885162383760a6840f8 | p1@ATP6V0C |
| 1.11e-19 | FFCP PHASE2:Hg19::chr17:68165657..68165688,+#_4e2abfbea87d79197caae8cd97fd66c5 | p1@KCNJ2 |
| 1.11e-19 | FFCP PHASE1:Hg19::chr17:68165657..68165688,+#_4e2abfbea87d79197caae8cd97fd66c5 | p1@KCNJ2 |
| 1.12e-19 | FFCP PHASE2:Hg19::chr17:7492684..7492778,-#_7dc2c6189f7959a4dcbcc038b0a02ee8 | p2@SOX15 |
| 1.12e-19 | FFCP PHASE1:Hg19::chr17:7492684..7492778,-#_7dc2c6189f7959a4dcbcc038b0a02ee8 | p2@SOX15 |
| 1.16e-19 | FFCP PHASE2:Hg19::chr19:11466086..11466159,+#_c33ff7c63579a29b5c38f0300ad829e5 | p1@LPPR2 |
| 1.16e-19 | FFCP PHASE1:Hg19::chr19:11466086..11466159,+#_c33ff7c63579a29b5c38f0300ad829e5 | p1@LPPR2 |
| 1.32e-19 | FFCP PHASE1:Hg19::chr18:59561658..59561685,-#_b5602bd4543e6a2d615cc516941a7253 | p@chr18:59561658..59561685, - |
| 1.32e-19 | FFCP PHASE2:Hg19::chr18:59561658..59561685,-#_b5602bd4543e6a2d615cc516941a7253 | p@chr18:59561658..59561685, - |
| 1.38e-19 | FFCP PHASE2:Hg19::chr12:110719036..110719113,+#_befe21584973aff84ff8aa7dd26b302d | p1@ATP2A2 |
| 1.38e-19 | FFCP PHASE1:Hg19::chr12:110719036..110719113,+#_befe21584973aff84ff8aa7dd26b302d | p1@ATP2A2 |
| 1.45e-19 | FFCP PHASE1:Hg19::chr6:123110389..123110441,+#_b6a54bab7db2b98511fe4b8a1413fcea | p1@SMPDL3A |
| 1.45e-19 | FFCP PHASE2:Hg19::chr6:123110389..123110441,+#_b6a54bab7db2b98511fe4b8a1413fcea | p1@SMPDL3A |
| 1.86e-19 | FFCP PHASE2:Hg19::chr10:118764649..118764683,-#_af27630acb791f1ee470e124bf92027e | p2@KIAA1598 |
| 1.86e-19 | FFCP PHASE1:Hg19::chr10:118764649..118764683,-#_af27630acb791f1ee470e124bf92027e | p2@KIAA1598 |
| 3.3e-19 | FFCP PHASE1:Hg19::chr2:153191678..153191697,+#_d0a04bd47a1ccc5bd661e3be7e6252e9 | p1@FMNL2 |
| 3.3e-19 | FFCP PHASE2:Hg19::chr2:153191678..153191697,+#_d0a04bd47a1ccc5bd661e3be7e6252e9 | p1@FMNL2 |
