Personal tools

CL:1000279: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:1000279
|alt_id=
|name=smooth muscle cell of large intestine
|namespace=cell
|def="A smooth muscle cell that is part of the large intestine." [GOC:tfm]
|xref=FMA:15653
|is_a=CL:0002504
|synonym="non-striated muscle fiber of large intestine" EXACT [FMA:15653]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A smooth muscle cell that is part of the large intestine." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:1000279
|is_a=CL:0002504
|is_obsolete=
|located_in=
|located_in=
|name=smooth muscle cell of large intestine
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000059
|part_of=UBERON:0000059
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="non-striated muscle fiber of large intestine" EXACT [FMA:15653]
|union_of=
|xref=FMA:15653
}}
}}

Latest revision as of 16:46, 12 September 2014

Name:smooth muscle cell of large intestine
Namespace:FANTOM
Definition:"A smooth muscle cell that is part of the large intestine." [GOC:tfm]
Xrefs:
links:
FMA:15653
Synonyms: "non-striated muscle fiber of large intestine" EXACT [FMA:15653]


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0002504(enteric smooth muscle cell)
part_of:UBERON:0000059(large intestine)



Children


is a:CL:1000280 (smooth muscle cell of colon)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1000279 (smooth muscle cell of large intestine), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.98e-131FFCP PHASE1:Hg19::chr12:52473515..52473526,+#_764e63356cf2d72be62c8ca180963b52p3@ENST00000546390, p3@uc009zme.1
8.98e-131FFCP PHASE2:Hg19::chr12:52473515..52473526,+#_764e63356cf2d72be62c8ca180963b52p3@ENST00000546390, p3@uc009zme.1
1.11e-98FFCP PHASE1:Hg19::chr20:49269691..49269695,+#_43d9b3317402fba7a60179368c745a19p1@ENST00000435177
1.11e-98FFCP PHASE2:Hg19::chr20:49269691..49269695,+#_43d9b3317402fba7a60179368c745a19p1@ENST00000435177
4.71e-66FFCP PHASE2:Hg19::chr12:52473502..52473510,+#_15cda13c14e324cc71c2cf7be77cc50bp2@ENST00000546390, p2@uc009zme.1
4.71e-66FFCP PHASE1:Hg19::chr12:52473502..52473510,+#_15cda13c14e324cc71c2cf7be77cc50bp2@ENST00000546390, p2@uc009zme.1
7.24e-50FFCP PHASE1:Hg19::chr3:177652390..177652395,+#_3bcec30055f13e1b7e4e9216ec3c1d5bp1@ENST00000450500
7.24e-50FFCP PHASE2:Hg19::chr3:177652390..177652395,+#_3bcec30055f13e1b7e4e9216ec3c1d5bp1@ENST00000450500
6.47e-47FFCP PHASE2:Hg19::chr13:94958134..94958164,+#_7d31b260e28c624304ace2663207e0a4p@chr13:94958134..94958164, +
6.47e-47FFCP PHASE1:Hg19::chr13:94958134..94958164,+#_7d31b260e28c624304ace2663207e0a4p@chr13:94958134..94958164, +
8.55e-40FFCP PHASE2:Hg19::chr2:114300263..114300269,-#_6933fb01cb3946758af3fe70952a3106p1@ENST00000416758
8.55e-40FFCP PHASE1:Hg19::chr2:114300263..114300269,-#_6933fb01cb3946758af3fe70952a3106p1@ENST00000416758
9.77e-40FFCP PHASE2:Hg19::chr16:86229885..86229905,+#_d742aa849fa0a3749aabf535486647ccp@chr16:86229885..86229905, +
9.77e-40FFCP PHASE1:Hg19::chr16:86229885..86229905,+#_d742aa849fa0a3749aabf535486647ccp@chr16:86229885..86229905, +
2.95e-37FFCP PHASE2:Hg19::chr16:86229916..86229943,+#_d752f00beaa97a52e277c8a8a2244654p@chr16:86229916..86229943, +
2.95e-37FFCP PHASE1:Hg19::chr16:86229916..86229943,+#_d752f00beaa97a52e277c8a8a2244654p@chr16:86229916..86229943, +
9.1e-34FFCP PHASE2:Hg19::chr6:31304866..31304870,-#_72642ba2ddd8bfbb658edd0056c2b639p@chr6:31304866..31304870, -
9.1e-34FFCP PHASE1:Hg19::chr6:31304866..31304870,-#_72642ba2ddd8bfbb658edd0056c2b639p@chr6:31304866..31304870, -
4.53e-30FFCP PHASE2:Hg19::chr8:120079398..120079416,+#_a6b97eee6619a27adc517cb2fc15bf7fp3@COLEC10
4.53e-30FFCP PHASE1:Hg19::chr8:120079398..120079416,+#_a6b97eee6619a27adc517cb2fc15bf7fp3@COLEC10
4.07e-27FFCP PHASE2:Hg19::chr6:134210625..134210636,+#_e9d2183a6e0c904cb65cece35502d752p6@TCF21
4.07e-27FFCP PHASE1:Hg19::chr6:134210625..134210636,+#_e9d2183a6e0c904cb65cece35502d752p6@TCF21
7.88e-27FFCP PHASE1:Hg19::chr18:77557973..77557984,+#_36c7694a628d030e525cdfe4584eaf42p@chr18:77557973..77557984, +
7.88e-27FFCP PHASE2:Hg19::chr18:77557973..77557984,+#_36c7694a628d030e525cdfe4584eaf42p@chr18:77557973..77557984, +
5.75e-26FFCP PHASE2:Hg19::chr1:78401534..78401545,+#_106c09c44cfd205163a2a33e2cb877abp@chr1:78401534..78401545, +
5.75e-26FFCP PHASE1:Hg19::chr1:78401534..78401545,+#_106c09c44cfd205163a2a33e2cb877abp@chr1:78401534..78401545, +
2.34e-25FFCP PHASE1:Hg19::chr15:50149374..50149385,+#_682e37c41339608c7c235a9367aca2c6p@chr15:50149374..50149385, +
2.34e-25FFCP PHASE2:Hg19::chr15:50149374..50149385,+#_682e37c41339608c7c235a9367aca2c6p@chr15:50149374..50149385, +
2.64e-25FFCP PHASE2:Hg19::chr7:136759435..136759447,+#_8724c294241c832513118952db3997d0p@chr7:136759435..136759447, +
2.64e-25FFCP PHASE1:Hg19::chr7:136759435..136759447,+#_8724c294241c832513118952db3997d0p@chr7:136759435..136759447, +
2.64e-25FFCP PHASE2:Hg19::chr3:150966773..150966784,-#_8724c294241c832513118952db3997d0p7@P2RY14
2.64e-25FFCP PHASE1:Hg19::chr3:150966773..150966784,-#_8724c294241c832513118952db3997d0p7@P2RY14
6.22e-25FFCP PHASE1:Hg19::chr5:10237680..10237685,+#_24a0e0e49f5bd24873d109a4904e5378p@chr5:10237680..10237685, +
6.22e-25FFCP PHASE2:Hg19::chr5:10237680..10237685,+#_24a0e0e49f5bd24873d109a4904e5378p@chr5:10237680..10237685, +
3.62e-24FFCP PHASE2:Hg19::chr4:1167293..1167308,-#_ce44802e925142afcc5f16707311feccp18@SPON2
3.62e-24FFCP PHASE1:Hg19::chr4:1167293..1167308,-#_ce44802e925142afcc5f16707311feccp18@SPON2
5.35e-24FFCP PHASE2:Hg19::chr16:86229728..86229756,+#_916086070a76dd37063f01018c3fa5acp@chr16:86229728..86229756, +
5.35e-24FFCP PHASE1:Hg19::chr16:86229728..86229756,+#_916086070a76dd37063f01018c3fa5acp@chr16:86229728..86229756, +
1.88e-23FFCP PHASE2:Hg19::chr3:150966718..150966738,-#_1edef52d4c30e099a2134103add7038fp9@P2RY14
1.88e-23FFCP PHASE1:Hg19::chr3:150966718..150966738,-#_1edef52d4c30e099a2134103add7038fp9@P2RY14
2.62e-23FFCP PHASE2:Hg19::chr8:109482025..109482032,+#_915fe1f0d23647ac373c238534556083p@chr8:109482025..109482032, +
2.62e-23FFCP PHASE1:Hg19::chr8:109482025..109482032,+#_915fe1f0d23647ac373c238534556083p@chr8:109482025..109482032, +
3.09e-23FFCP PHASE1:Hg19::chr4:120549834..120549846,-#_884054d9527720b1eae8dcf40c221816p15@PDE5A
3.09e-23FFCP PHASE2:Hg19::chr4:120549834..120549846,-#_884054d9527720b1eae8dcf40c221816p15@PDE5A
4.66e-22FFCP PHASE1:Hg19::chr9:113137742..113137746,-#_bb01ba4d2abb5f8012ae33fcc4087269p@chr9:113137742..113137746, -
4.66e-22FFCP PHASE2:Hg19::chr9:113137742..113137746,-#_bb01ba4d2abb5f8012ae33fcc4087269p@chr9:113137742..113137746, -
1.59e-21FFCP PHASE1:Hg19::chr3:150966697..150966714,-#_87620a8741c515c5b3b84394c899b3d3p8@P2RY14
1.59e-21FFCP PHASE2:Hg19::chr3:150966697..150966714,-#_87620a8741c515c5b3b84394c899b3d3p8@P2RY14
1.76e-21FFCP PHASE2:Hg19::chr3:150966861..150966873,-#_3e9473d2a163b3959dda61557f0a24f8p6@P2RY14
1.76e-21FFCP PHASE1:Hg19::chr3:150966861..150966873,-#_3e9473d2a163b3959dda61557f0a24f8p6@P2RY14
2.67e-21FFCP PHASE2:Hg19::chr18:77557932..77557943,+#_b88337052132f1f79c0ad7c10b30407cp@chr18:77557932..77557943, +
2.67e-21FFCP PHASE1:Hg19::chr18:77557932..77557943,+#_b88337052132f1f79c0ad7c10b30407cp@chr18:77557932..77557943, +
5.41e-21FFCP PHASE2:Hg19::chr1:246151834..246151867,-#_eece09d7a9b601ab5f5dd8b008d87246p4@SMYD3
5.41e-21FFCP PHASE1:Hg19::chr1:246151834..246151867,-#_eece09d7a9b601ab5f5dd8b008d87246p4@SMYD3
7.12e-21FFCP PHASE2:Hg19::chr5:52096217..52096226,+#_ae864cca13630945f696310037eeb938p11@PELO
7.12e-21FFCP PHASE1:Hg19::chr5:52096217..52096226,+#_ae864cca13630945f696310037eeb938p11@PELO
7.42e-21FFCP PHASE1:Hg19::chr5:34915414..34915420,+#_cfaadc9a9f79224862c39013abaef91ep4@BRIX1
7.42e-21FFCP PHASE2:Hg19::chr5:34915414..34915420,+#_cfaadc9a9f79224862c39013abaef91ep4@BRIX1
1.07e-20FFCP PHASE2:Hg19::chr8:120079417..120079436,+#_cf7507555c6b022a4127fa4ae357e0fep2@COLEC10
1.07e-20FFCP PHASE1:Hg19::chr8:120079417..120079436,+#_cf7507555c6b022a4127fa4ae357e0fep2@COLEC10
5.27e-20FFCP PHASE1:Hg19::chr6:134210095..134210147,-#_faf94c19f3081d07154ca9f973d5b29fp1@uc003qeg.1
5.27e-20FFCP PHASE2:Hg19::chr6:134210095..134210147,-#_faf94c19f3081d07154ca9f973d5b29fp1@uc003qeg.1
6.54e-20FFCP PHASE2:Hg19::chr9:118701892..118701903,+#_ce5097d6a004328c7dd678b230732793p@chr9:118701892..118701903, +
6.54e-20FFCP PHASE1:Hg19::chr9:118701892..118701903,+#_ce5097d6a004328c7dd678b230732793p@chr9:118701892..118701903, +
8.67e-20FFCP PHASE1:Hg19::chr15:50193489..50193500,-#_f4239d1f5d991a5ea6820090e9b8232bp@chr15:50193489..50193500, -
8.67e-20FFCP PHASE2:Hg19::chr15:50193489..50193500,-#_f4239d1f5d991a5ea6820090e9b8232bp@chr15:50193489..50193500, -
6.34e-19FFCP PHASE2:Hg19::chr9:118701819..118701835,+#_9d3a88636b2131afc00a6009f2afbf28p@chr9:118701819..118701835, +
6.34e-19FFCP PHASE1:Hg19::chr9:118701819..118701835,+#_9d3a88636b2131afc00a6009f2afbf28p@chr9:118701819..118701835, +
2.53e-18FFCP PHASE2:Hg19::chr7:150574212..150574225,-#_124df04dac7fbc8aed5cef3c98729133p@chr7:150574212..150574225, -
2.53e-18FFCP PHASE1:Hg19::chr7:150574212..150574225,-#_124df04dac7fbc8aed5cef3c98729133p@chr7:150574212..150574225, -
2.81e-18FFCP PHASE2:Hg19::chr1:246023808..246023820,-#_ca30f297998ba8fea8d1b53fa3d539cbp@chr1:246023808..246023820, -
2.81e-18FFCP PHASE1:Hg19::chr1:246023808..246023820,-#_ca30f297998ba8fea8d1b53fa3d539cbp@chr1:246023808..246023820, -
9.46e-18FFCP PHASE2:Hg19::chr4:120546882..120546885,-#_e34d2db64c280c117c1362feb2e34b6bp@chr4:120546882..120546885, -
9.46e-18FFCP PHASE1:Hg19::chr4:120546882..120546885,-#_e34d2db64c280c117c1362feb2e34b6bp@chr4:120546882..120546885, -
9.46e-18FFCP PHASE2:Hg19::chr10:62677334..62677342,-#_e34d2db64c280c117c1362feb2e34b6bp@chr10:62677334..62677342, -
9.46e-18FFCP PHASE1:Hg19::chr10:62677334..62677342,-#_e34d2db64c280c117c1362feb2e34b6bp@chr10:62677334..62677342, -
1.21e-17FFCP PHASE2:Hg19::chr11:19441234..19441247,+#_8c9c9a9d054d522cd20cee1c0a24164cp@chr11:19441234..19441247, +
1.21e-17FFCP PHASE1:Hg19::chr11:19441234..19441247,+#_8c9c9a9d054d522cd20cee1c0a24164cp@chr11:19441234..19441247, +
1.51e-17FFCP PHASE2:Hg19::chr15:80800274..80800278,-#_bd0d7145c1860fa54ebc351f56d52c5dp@chr15:80800274..80800278, -
1.51e-17FFCP PHASE1:Hg19::chr15:80800274..80800278,-#_bd0d7145c1860fa54ebc351f56d52c5dp@chr15:80800274..80800278, -
2.0e-17FFCP PHASE2:Hg19::chr1:31842256..31842273,+#_ba48ddf16c538d415b317ea0bbc37c31p@chr1:31842256..31842273, +
2.0e-17FFCP PHASE1:Hg19::chr1:31842256..31842273,+#_ba48ddf16c538d415b317ea0bbc37c31p@chr1:31842256..31842273, +
2.07e-17FFCP PHASE2:Hg19::chr18:77557948..77557968,+#_322eb77873d05e5435e33eb0db67ee30p@chr18:77557948..77557968, +
2.07e-17FFCP PHASE1:Hg19::chr18:77557948..77557968,+#_322eb77873d05e5435e33eb0db67ee30p@chr18:77557948..77557968, +
3.48e-17FFCP PHASE2:Hg19::chr4:1165106..1165131,-#_49faa5f487e06f70d92270508bca1e8cp15@SPON2
3.48e-17FFCP PHASE1:Hg19::chr4:1165106..1165131,-#_49faa5f487e06f70d92270508bca1e8cp15@SPON2
4.46e-17FFCP PHASE2:Hg19::chr10:101292731..101292741,+#_11765a9908b4780c7e558eaaf86c9fb6p2@NKX2-3
4.46e-17FFCP PHASE1:Hg19::chr10:101292731..101292741,+#_11765a9908b4780c7e558eaaf86c9fb6p2@NKX2-3
5.3e-17FFCP PHASE2:Hg19::chr7:136759451..136759469,+#_1f8009d29aa82728c4cdf25814abc86fp@chr7:136759451..136759469, +
5.3e-17FFCP PHASE1:Hg19::chr7:136759451..136759469,+#_1f8009d29aa82728c4cdf25814abc86fp@chr7:136759451..136759469, +
8.36e-17FFCP PHASE2:Hg19::chr1:155225028..155225037,-#_cc5ae60a70ee703b2758cd4bc3a13d59p7@FAM189B
8.36e-17FFCP PHASE1:Hg19::chr1:155225028..155225037,-#_cc5ae60a70ee703b2758cd4bc3a13d59p7@FAM189B
1.05e-16FFCP PHASE2:Hg19::chr8:120079478..120079499,+#_77aafacec9a7ead58af82e2c48ecbd6bp1@COLEC10
1.05e-16FFCP PHASE1:Hg19::chr8:120079478..120079499,+#_77aafacec9a7ead58af82e2c48ecbd6bp1@COLEC10
1.88e-16FFCP PHASE1:Hg19::chr4:151503507..151503518,+#_76bc5e987e4a512cb0a12511bfceabd5p6@MAB21L2
1.88e-16FFCP PHASE2:Hg19::chr4:151503507..151503518,+#_76bc5e987e4a512cb0a12511bfceabd5p6@MAB21L2
2.92e-16FFCP PHASE2:Hg19::chr10:101292684..101292706,+#_50430d40ce80b580d5d4c09af6e2c292p1@NKX2-3
2.92e-16FFCP PHASE1:Hg19::chr10:101292684..101292706,+#_50430d40ce80b580d5d4c09af6e2c292p1@NKX2-3
4.41e-16FFCP PHASE1:Hg19::chr1:21766691..21766715,+#_1840349985046e234fd80195aef4079fp3@NBPF3
4.41e-16FFCP PHASE2:Hg19::chr1:21766691..21766715,+#_1840349985046e234fd80195aef4079fp3@NBPF3

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:1000279&oldid=3275574"