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{{UBERON
{{UBERON
|id=UBERON:0001949
|alt_id=UBERON:FMA_62423-MA_0001576
|name=gingival epithelium
|namespace=
|def="A stratified squamous epithelium consisting of a basal layer; it is keratinized or parakeratinized[BTO]." [BTO:0004998]
|xref=BTO:0004998;;FMA:62423;;MA:0001576;;ncithesaurus:Gingival_Epithelium
|is_a=UBERON:0000486;;UBERON:0003350;;UBERON:0003929;;UBERON:0004807;;UBERON:0010371
|synonym="epithelial tissue of gingiva" EXACT [OBOL:automatic];;"epithelium of gingiva" EXACT [];;"gingiva epithelial tissue" EXACT [OBOL:automatic];;"gingiva epithelium" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=UBERON:FMA_62423-MA_0001576
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A stratified squamous epithelium consisting of a basal layer; it is keratinized or parakeratinized[BTO]." [BTO:0004998]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001949
|is_a=UBERON:0002424 ;;UBERON:0006915
|is_obsolete=
|located_in=
|located_in=
|name=gingival epithelium
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001828
|part_of=UBERON:0001828
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="epithelial tissue of gingiva" EXACT [OBOL:automatic];;"epithelium of gingiva" EXACT [];;"gingiva epithelial tissue" EXACT [OBOL:automatic];;"gingiva epithelium" EXACT [OBOL:automatic]
|union_of=
|xref=BTO:0004998;;FMA:62423;;MA:0001576;;ncithesaurus:Gingival_Epithelium
}}
}}

Latest revision as of 17:23, 12 September 2014

Name:gingival epithelium
Namespace:FANTOM
Definition:"A stratified squamous epithelium consisting of a basal layer; it is keratinized or parakeratinized[BTO]." [BTO:0004998]
Xrefs:
links:

BTO:0004998
FMA:62423
MA:0001576

ncithesaurus:Gingival_Epithelium
Synonyms: "epithelial tissue of gingiva" EXACT [OBOL:automatic]
"epithelium of gingiva" EXACT []
"gingiva epithelial tissue" EXACT [OBOL:automatic]
"gingiva epithelium" EXACT [OBOL:automatic]
Alt_id: UBERON:FMA_62423-MA_0001576

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002424(oral epithelium),UBERON:0006915(stratified squamous epithelium)
part_of:UBERON:0001828(gingiva)



Children

part of:CL:0002621 (gingival epithelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11221-116B6 (Gingival epithelial cells, donor1 (GEA11))
  • 11302-117B6 (Gingival epithelial cells, donor2 (GEA14))
  • 11379-118B2 (Gingival epithelial cells, donor3 (GEA15))


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001949 (gingival epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.06e-99FFCP PHASE1:Hg19::chr4:143470541..143470551,+#_1f7f72d444e25a6c09fcb6c286ac452dp@chr4:143470541..143470551, +
4.06e-99FFCP PHASE2:Hg19::chr4:143470541..143470551,+#_1f7f72d444e25a6c09fcb6c286ac452dp@chr4:143470541..143470551, +
1.52e-87FFCP PHASE1:Hg19::chr1:14465017..14465026,+#_dd14ca5959de4fbd059438420b177d70p@chr1:14465017..14465026, +
1.52e-87FFCP PHASE2:Hg19::chr17:73753856..73753871,+#_dd14ca5959de4fbd059438420b177d70p1@CU674593
1.52e-87FFCP PHASE1:Hg19::chr17:73753856..73753871,+#_dd14ca5959de4fbd059438420b177d70p1@CU674593
1.52e-87FFCP PHASE2:Hg19::chr1:14465017..14465026,+#_dd14ca5959de4fbd059438420b177d70p@chr1:14465017..14465026, +
2.28e-85FFCP PHASE2:Hg19::chr8:130798890..130798901,-#_510f319bae66e927778859504192ba4ap3@GSDMC
2.28e-85FFCP PHASE1:Hg19::chr8:130798890..130798901,-#_510f319bae66e927778859504192ba4ap3@GSDMC
5.41e-85FFCP PHASE2:Hg19::chr11:93754560..93754567,+#_dbb58d4af95d53f8ccf1f6f7f674e403p@chr11:93754560..93754567, +
5.41e-85FFCP PHASE1:Hg19::chr11:93754560..93754567,+#_dbb58d4af95d53f8ccf1f6f7f674e403p@chr11:93754560..93754567, +
2.27e-84FFCP PHASE2:Hg19::chr10:105791095..105791110,-#_17d40413fbf7bf733ec29fa4df662ed1p@chr10:105791095..105791110, -
2.27e-84FFCP PHASE1:Hg19::chr10:105791095..105791110,-#_17d40413fbf7bf733ec29fa4df662ed1p@chr10:105791095..105791110, -
1.01e-74FFCP PHASE2:Hg19::chr1:153533849..153533860,-#_c5e0da855590070edb76f2e0780d3f3cp@chr1:153533849..153533860, -
1.01e-74FFCP PHASE1:Hg19::chr1:153533849..153533860,-#_c5e0da855590070edb76f2e0780d3f3cp@chr1:153533849..153533860, -
1.01e-74FFCP PHASE2:Hg19::chr7:40883542..40883550,+#_c5e0da855590070edb76f2e0780d3f3cp@chr7:40883542..40883550, +
1.01e-74FFCP PHASE1:Hg19::chr7:40883542..40883550,+#_c5e0da855590070edb76f2e0780d3f3cp@chr7:40883542..40883550, +
2.14e-74FFCP PHASE2:Hg19::chr3:190252374..190252383,-#_cc2da72e90e2eb276f628a138e150637p@chr3:190252374..190252383, -
2.14e-74FFCP PHASE1:Hg19::chr3:190252374..190252383,-#_cc2da72e90e2eb276f628a138e150637p@chr3:190252374..190252383, -
4.55e-74FFCP PHASE1:Hg19::chr21:44957893..44957903,-#_1526422914d2e17b9a55c1c96695112ep@chr21:44957893..44957903, -
4.55e-74FFCP PHASE2:Hg19::chr21:44957893..44957903,-#_1526422914d2e17b9a55c1c96695112ep@chr21:44957893..44957903, -
9.64e-74FFCP PHASE2:Hg19::chr10:106205489..106205498,+#_fbb30c1454dfa876cb3d5fe89f98bf56p@chr10:106205489..106205498, +
9.64e-74FFCP PHASE1:Hg19::chr10:106205489..106205498,+#_fbb30c1454dfa876cb3d5fe89f98bf56p@chr10:106205489..106205498, +
3.35e-66FFCP PHASE1:Hg19::chr15:40531729..40531738,+#_a490473bb7fc3f6f0bd768e052facac5p15@PAK6
3.35e-66FFCP PHASE2:Hg19::chr15:40531729..40531738,+#_a490473bb7fc3f6f0bd768e052facac5p15@PAK6
4.71e-66FFCP PHASE2:Hg19::chr16:82671490..82671521,+#_1338156f928ec3b93db5987c67395d36p@chr16:82671490..82671521, +
4.71e-66FFCP PHASE1:Hg19::chr16:82671490..82671521,+#_1338156f928ec3b93db5987c67395d36p@chr16:82671490..82671521, +
6.53e-66FFCP PHASE2:Hg19::chr9:108870138..108870152,+#_88253062b9407ee9b760d0c07788d9f8p1@uc004bcw.2
6.53e-66FFCP PHASE1:Hg19::chr9:108870138..108870152,+#_88253062b9407ee9b760d0c07788d9f8p1@uc004bcw.2
1.22e-59FFCP PHASE2:Hg19::chr11:13030878..13030889,+#_b6516beccc6bff060f5f8c40f0d9e788p2@RASSF10
1.22e-59FFCP PHASE1:Hg19::chr11:13030878..13030889,+#_b6516beccc6bff060f5f8c40f0d9e788p2@RASSF10
1.83e-59FFCP PHASE2:Hg19::chr18:20493879..20493891,+#_371d58ec95c3aea84037b19bb5fd44f5p@chr18:20493879..20493891, +
1.83e-59FFCP PHASE1:Hg19::chr18:20493879..20493891,+#_371d58ec95c3aea84037b19bb5fd44f5p@chr18:20493879..20493891, +
2.73e-59FFCP PHASE2:Hg19::chr8:124850358..124850380,+#_c3ab95f7db7d3d3c87081166fd8a5424p@chr8:124850358..124850380, +
2.73e-59FFCP PHASE1:Hg19::chr8:124850358..124850380,+#_c3ab95f7db7d3d3c87081166fd8a5424p@chr8:124850358..124850380, +
8.69e-55FFCP PHASE2:Hg19::chr13:30259768..30259777,+#_6831e7347ea1ca2e5c4102cf2e910563p@chr13:30259768..30259777, +
8.69e-55FFCP PHASE1:Hg19::chr13:30259768..30259777,+#_6831e7347ea1ca2e5c4102cf2e910563p@chr13:30259768..30259777, +
1.81e-54FFCP PHASE2:Hg19::chr5:167247119..167247129,+#_ca62414e80ff180e58648eff530f9cf4p@chr5:167247119..167247129, +
1.81e-54FFCP PHASE1:Hg19::chr5:167247119..167247129,+#_ca62414e80ff180e58648eff530f9cf4p@chr5:167247119..167247129, +
2.17e-54FFCP PHASE2:Hg19::chr13:75017232..75017235,+#_3c3008ff61cd34d166c7a8c088f3e4afp@chr13:75017232..75017235, +
2.17e-54FFCP PHASE2:Hg19::chr5:52619638..52619641,+#_3c3008ff61cd34d166c7a8c088f3e4afp@chr5:52619638..52619641, +
2.17e-54FFCP PHASE1:Hg19::chr5:52619638..52619641,+#_3c3008ff61cd34d166c7a8c088f3e4afp@chr5:52619638..52619641, +
2.17e-54FFCP PHASE1:Hg19::chr13:75017232..75017235,+#_3c3008ff61cd34d166c7a8c088f3e4afp@chr13:75017232..75017235, +
5.41e-54FFCP PHASE1:Hg19::chr11:129511955..129511961,-#_63ef71d91a3ed39634f12ac3effadb1bp@chr11:129511955..129511961, -
5.41e-54FFCP PHASE2:Hg19::chr11:129511955..129511961,-#_63ef71d91a3ed39634f12ac3effadb1bp@chr11:129511955..129511961, -
2.87e-53FFCP PHASE2:Hg19::chr1:183213228..183213235,+#_ca1111d0240acce4cc25c920ee8a4a77p@chr1:183213228..183213235, +
2.87e-53FFCP PHASE1:Hg19::chr1:183213228..183213235,+#_ca1111d0240acce4cc25c920ee8a4a77p@chr1:183213228..183213235, +
2.87e-53FFCP PHASE2:Hg19::chr3:52440350..52440361,-#_ca1111d0240acce4cc25c920ee8a4a77p@chr3:52440350..52440361, -
2.87e-53FFCP PHASE1:Hg19::chr3:52440350..52440361,-#_ca1111d0240acce4cc25c920ee8a4a77p@chr3:52440350..52440361, -
4.89e-53FFCP PHASE2:Hg19::chr8:130798565..130798567,-#_89181cade1d1bbabd928e84e18818e53p4@GSDMC
4.89e-53FFCP PHASE1:Hg19::chr8:130798565..130798567,-#_89181cade1d1bbabd928e84e18818e53p4@GSDMC
4.89e-53FFCP PHASE2:Hg19::chr10:5567644..5567657,+#_89181cade1d1bbabd928e84e18818e53p@chr10:5567644..5567657, +
4.89e-53FFCP PHASE1:Hg19::chr10:5567644..5567657,+#_89181cade1d1bbabd928e84e18818e53p@chr10:5567644..5567657, +
6.39e-53FFCP PHASE2:Hg19::chr17:73720330..73720338,+#_76533859e6563f49f34792c37a92378dp22@ITGB4
6.39e-53FFCP PHASE2:Hg19::chr10:106205503..106205518,+#_76533859e6563f49f34792c37a92378dp@chr10:106205503..106205518, +
6.39e-53FFCP PHASE1:Hg19::chr17:73720330..73720338,+#_76533859e6563f49f34792c37a92378dp22@ITGB4
6.39e-53FFCP PHASE1:Hg19::chr10:106205503..106205518,+#_76533859e6563f49f34792c37a92378dp@chr10:106205503..106205518, +
6.12e-50FFCP PHASE2:Hg19::chr19:10665857..10665900,-#_20984681ad033073002f4adfa043b672p@chr19:10665857..10665900, -
6.12e-50FFCP PHASE1:Hg19::chr19:10665857..10665900,-#_20984681ad033073002f4adfa043b672p@chr19:10665857..10665900, -
7.24e-50FFCP PHASE1:Hg19::chr11:392625..392628,+#_ca78ba20ef811991f3f7c2c4790891f8p13@PKP3
7.24e-50FFCP PHASE2:Hg19::chr11:392625..392628,+#_ca78ba20ef811991f3f7c2c4790891f8p13@PKP3
5.68e-46FFCP PHASE1:Hg19::chr2:231649545..231649550,-#_bebf315cee89f9b2ba7897a826c82ffep@chr2:231649545..231649550, -
5.68e-46FFCP PHASE2:Hg19::chr12:116955659..116955671,+#_bebf315cee89f9b2ba7897a826c82ffep1@ENST00000552992
5.68e-46FFCP PHASE1:Hg19::chr12:116955659..116955671,+#_bebf315cee89f9b2ba7897a826c82ffep1@ENST00000552992
5.68e-46FFCP PHASE2:Hg19::chr2:231649545..231649550,-#_bebf315cee89f9b2ba7897a826c82ffep@chr2:231649545..231649550, -
6.94e-44FFCP PHASE2:Hg19::chr11:13073062..13073067,+#_2ce8b05797594657b05abe8c85d62355p@chr11:13073062..13073067, +
6.94e-44FFCP PHASE1:Hg19::chr11:13073062..13073067,+#_2ce8b05797594657b05abe8c85d62355p@chr11:13073062..13073067, +
9.28e-44FFCP PHASE2:Hg19::chr6:29643393..29643442,-#_0bbc1dfd3b2e3e0ee719b498a812ec0fp@chr6:29643393..29643442, -
9.28e-44FFCP PHASE1:Hg19::chr6:29643393..29643442,-#_0bbc1dfd3b2e3e0ee719b498a812ec0fp@chr6:29643393..29643442, -
1.43e-43FFCP PHASE2:Hg19::chr8:105212349..105212367,+#_41a08f489ec67e4bdc51bf15dadfadafp@chr8:105212349..105212367, +
1.43e-43FFCP PHASE1:Hg19::chr8:105212349..105212367,+#_41a08f489ec67e4bdc51bf15dadfadafp@chr8:105212349..105212367, +
1.92e-43FFCP PHASE1:Hg19::chr11:93754316..93754353,+#_0147ab6a993a2ff5043cbbc9c74e9a7ep2@HEPHL1
1.92e-43FFCP PHASE2:Hg19::chr11:93754316..93754353,+#_0147ab6a993a2ff5043cbbc9c74e9a7ep2@HEPHL1
2.21e-43FFCP PHASE2:Hg19::chr21:44957855..44957891,-#_17693727e7f45d89034068379d4db3efp@chr21:44957855..44957891, -
2.21e-43FFCP PHASE1:Hg19::chr21:44957855..44957891,-#_17693727e7f45d89034068379d4db3efp@chr21:44957855..44957891, -
4.55e-43FFCP PHASE1:Hg19::chr2:43768420..43768427,-#_e1c8ee70731e8a0b757bf76264ccbeecp5@THADA
4.55e-43FFCP PHASE2:Hg19::chr9:34662651..34662656,-#_e1c8ee70731e8a0b757bf76264ccbeecp1@CCL27
4.55e-43FFCP PHASE1:Hg19::chr9:34662651..34662656,-#_e1c8ee70731e8a0b757bf76264ccbeecp1@CCL27
4.55e-43FFCP PHASE2:Hg19::chr2:43768420..43768427,-#_e1c8ee70731e8a0b757bf76264ccbeecp5@THADA
6.07e-43FFCP PHASE1:Hg19::chr18:9617195..9617198,-#_6e7ca856bd8b6a150bdf68aa06726eddp@chr18:9617195..9617198, -
6.07e-43FFCP PHASE2:Hg19::chr18:9617195..9617198,-#_6e7ca856bd8b6a150bdf68aa06726eddp@chr18:9617195..9617198, -
1.91e-42FFCP PHASE2:Hg19::chr1:153534027..153534037,+#_f5157360f1fa5d1474b9c8d1008d7edfp@chr1:153534027..153534037, +
1.91e-42FFCP PHASE1:Hg19::chr1:153534027..153534037,+#_f5157360f1fa5d1474b9c8d1008d7edfp@chr1:153534027..153534037, +
5.06e-41FFCP PHASE2:Hg19::chr7:40883521..40883532,+#_9fc2b20fa19b9f271d0ec458032c6bb8p@chr7:40883521..40883532, +
5.06e-41FFCP PHASE1:Hg19::chr7:40883521..40883532,+#_9fc2b20fa19b9f271d0ec458032c6bb8p@chr7:40883521..40883532, +
6.64e-41FFCP PHASE2:Hg19::chr3:149510368..149510386,-#_a67e2b70d6bdf7c078ad48b480fb2b71p5@ANKUB1
6.64e-41FFCP PHASE1:Hg19::chr3:149510368..149510386,-#_a67e2b70d6bdf7c078ad48b480fb2b71p5@ANKUB1
1.96e-40FFCP PHASE1:Hg19::chr1:183213300..183213316,+#_dd52b770ea5a1084a578284d179897cap@chr1:183213300..183213316, +
1.96e-40FFCP PHASE2:Hg19::chr1:183213300..183213316,+#_dd52b770ea5a1084a578284d179897cap@chr1:183213300..183213316, +
2.93e-40FFCP PHASE2:Hg19::chr5:52552639..52552656,-#_8e4bb96518fe82bed7c977286effc43dp@chr5:52552639..52552656, -
2.93e-40FFCP PHASE1:Hg19::chr5:52552639..52552656,-#_8e4bb96518fe82bed7c977286effc43dp@chr5:52552639..52552656, -
4.38e-40FFCP PHASE2:Hg19::chr4:15920326..15920338,+#_1566738bdfd79aae00f22b889bffe0c4p@chr4:15920326..15920338, +
4.38e-40FFCP PHASE1:Hg19::chrX:19692351..19692356,-#_1566738bdfd79aae00f22b889bffe0c4p@chrX:19692351..19692356, -
4.38e-40FFCP PHASE2:Hg19::chrX:19692351..19692356,-#_1566738bdfd79aae00f22b889bffe0c4p@chrX:19692351..19692356, -
4.38e-40FFCP PHASE1:Hg19::chr4:15920326..15920338,+#_1566738bdfd79aae00f22b889bffe0c4p@chr4:15920326..15920338, +
1.23e-38FFCP PHASE2:Hg19::chr2:69026957..69026966,+#_d2253dbfb08f8dd00f23e333a030b6ddp@chr2:69026957..69026966, +
1.23e-38FFCP PHASE1:Hg19::chr2:69026957..69026966,+#_d2253dbfb08f8dd00f23e333a030b6ddp@chr2:69026957..69026966, +
2.18e-38FFCP PHASE2:Hg19::chr7:56051493..56051514,+#_e878c269f24a5e2b2595d2963f4ea02dp@chr7:56051493..56051514, +
2.18e-38FFCP PHASE1:Hg19::chr7:56051493..56051514,+#_e878c269f24a5e2b2595d2963f4ea02dp@chr7:56051493..56051514, +
2.64e-38FFCP PHASE2:Hg19::chr7:41277861..41277905,+#_c983842231030f3e42634e70ae2a72f1p@chr7:41277861..41277905, +
2.64e-38FFCP PHASE1:Hg19::chr7:41277861..41277905,+#_c983842231030f3e42634e70ae2a72f1p@chr7:41277861..41277905, +

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