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{{UBERON
{{UBERON
|id=UBERON:0003059
|alt_id=UBERON:XAO_0000057-ZFA_0000279
|name=presomitic mesoderm
|namespace=
|def="Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. <a href='http://zfin.org/cgi-bin/ZFIN_jump?record=ZDB-PUB-961014-576'>Kimmel et al, 1995.</a>" [ZFIN:curator]
|xref=AAO:0011086;;EFO:0001982;;TAO:0000279;;VHOG:0000559;;XAO:0000057;;ZFA:0000279
|is_a=UBERON:0005423
|synonym="presumptive somite mesoderm" RELATED [];;"PSM" RELATED [];;"segmental plate" EXACT [];;"somitogenic mesoderm" RELATED [];;"unsegmented paraxial mesoderm" EXACT [UBERON:cjm]
|comment=
|comment=
|alt_id=UBERON:XAO_0000057-ZFA_0000279
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. <a href
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0007282
|develops_from=UBERON:0007282
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003059
|is_a=UBERON:0005423
|is_obsolete=
|located_in=
|located_in=
|name=presomitic mesoderm
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0003077
|part_of=UBERON:0003077
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. Kimmel et al, 1995.[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. Kimmel et al, 1995.[TAO]" xsd:string
|is_obsolete=
|subset=
|preceded_by=
|synonym="presumptive somite mesoderm" RELATED [];;"PSM" RELATED [];;"segmental plate" EXACT [];;"somitogenic mesoderm" RELATED [];;"unsegmented paraxial mesoderm" EXACT [UBERON:cjm]
|union_of=
|xref=AAO:0011086;;EFO:0001982;;TAO:0000279;;VHOG:0000559;;XAO:0000057;;ZFA:0000279
}}
}}

Latest revision as of 17:35, 12 September 2014

Name:presomitic mesoderm
Namespace:FANTOM
Definition:"Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. <a href
Xrefs:
links:

AAO:0011086
EFO:0001982
TAO:0000279
VHOG:0000559
XAO:0000057

ZFA:0000279
Synonyms: "presumptive somite mesoderm" RELATED []
"PSM" RELATED []
"segmental plate" EXACT []
"somitogenic mesoderm" RELATED []
"unsegmented paraxial mesoderm" EXACT [UBERON:cjm]
Alt_id: UBERON:XAO_0000057-ZFA_0000279

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
develops_from:UBERON:0007282(presumptive segmental plate)
part_of:UBERON:0003077(paraxial mesoderm)



Children

develops from:UBERON:0002329 (somite)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003059 (presomitic mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.24e-58FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_f2e11086ca10bfb6174e89f46111e5b9p@chrX:160838683..160838694, +
5.24e-58FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_f2e11086ca10bfb6174e89f46111e5b9p@chrX:160838683..160838694, +
5.11e-50FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_16cf9f251c1c57bf0da847655395fc58p@chr12:105433069..105433075, -
5.11e-50FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_16cf9f251c1c57bf0da847655395fc58p@chrX:65748600..65748616, +
5.11e-50FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_16cf9f251c1c57bf0da847655395fc58p@chrX:65748600..65748616, +
5.11e-50FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_16cf9f251c1c57bf0da847655395fc58p@chr12:105433069..105433075, -
1.47e-48FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_8c07e3e502785a76b17c6ad4da5e09fcp@chrX:160838787..160838800, +
1.47e-48FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_8c07e3e502785a76b17c6ad4da5e09fcp@chrX:160838787..160838800, +
1.58e-44FFCP PHASE1:Hg19::chr10:49813077..49813087,-#_caaf15760ba38a4ce546a9275dfad131p8@ARHGAP22
1.58e-44FFCP PHASE2:Hg19::chr10:49813077..49813087,-#_caaf15760ba38a4ce546a9275dfad131p8@ARHGAP22
8.42e-44FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_2f8fdd6bd2f23fb2e3db190e4e2c640dp@chr11:81849982..81850000, +
8.42e-44FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_2f8fdd6bd2f23fb2e3db190e4e2c640dp@chr11:81849982..81850000, +
9.2e-41FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_a5858d788597bec0730cd162f4a7c9acp@chr6:53359400..53359406, +
9.2e-41FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_a5858d788597bec0730cd162f4a7c9acp@chr6:53359400..53359406, +
1.15e-40FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_a7a24eb9d15b3831843c7b20e0ebfb66p@chr17:14813242..14813246, -
1.15e-40FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_a7a24eb9d15b3831843c7b20e0ebfb66p@chr17:14813242..14813246, -
2.26e-39FFCP PHASE1:Hg19::chr10:49813051..49813064,-#_c2d5a9de8fc0c75137dd364f3b818dfap4@ARHGAP22
2.26e-39FFCP PHASE2:Hg19::chr10:49813051..49813064,-#_c2d5a9de8fc0c75137dd364f3b818dfap4@ARHGAP22
2.88e-39FFCP PHASE1:Hg19::chr9:35685631..35685657,+#_af53ce1caf5d4f7992abee8878a48cd5p@chr9:35685631..35685657, +
2.88e-39FFCP PHASE2:Hg19::chr9:35685631..35685657,+#_af53ce1caf5d4f7992abee8878a48cd5p@chr9:35685631..35685657, +
3.7e-39FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_0be163541f44a17202b377da204da742p4@Gpr39
3.7e-39FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_0be163541f44a17202b377da204da742p4@Gpr39
3.75e-39FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_eac384e47b5631ae0baa1f09dd30577ap@chrX:160840025..160840037, +
3.75e-39FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_eac384e47b5631ae0baa1f09dd30577ap@chrX:160840048..160840057, +
3.75e-39FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_eac384e47b5631ae0baa1f09dd30577ap@chrX:160840025..160840037, +
3.75e-39FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_eac384e47b5631ae0baa1f09dd30577ap@chrX:160823859..160823870, +
3.75e-39FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_eac384e47b5631ae0baa1f09dd30577ap@chrX:160823859..160823870, +
3.75e-39FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_eac384e47b5631ae0baa1f09dd30577ap@chrX:160840048..160840057, +
1.14e-38FFCP PHASE1:Hg19::chr6:148593425..148593498,+#_15359e7aa3f5dfea3a0f7fdc021a54cbp2@SASH1
1.14e-38FFCP PHASE2:Hg19::chr6:148593425..148593498,+#_15359e7aa3f5dfea3a0f7fdc021a54cbp2@SASH1
1.34e-36FFCP PHASE1:Hg19::chr10:49813013..49813032,-#_1c92a48d94f7d168a1b54717e682a729p3@ARHGAP22
1.34e-36FFCP PHASE2:Hg19::chr10:49813013..49813032,-#_1c92a48d94f7d168a1b54717e682a729p3@ARHGAP22
1.46e-35FFCP PHASE1:Hg19::chr19:50031567..50031632,+#_d354578b5a772a4946463c4bd8424eb6p2@RCN3
1.46e-35FFCP PHASE2:Hg19::chr19:50031567..50031632,+#_d354578b5a772a4946463c4bd8424eb6p2@RCN3
3.31e-35FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_b488d1289a402c7605d03eb537cc6b37p11@Fam198b
3.31e-35FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_b488d1289a402c7605d03eb537cc6b37p11@Fam198b
3.69e-35FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_990f98e58d201d977de4aa1b084e6444p@chr1:127574253..127574264, +
3.69e-35FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_990f98e58d201d977de4aa1b084e6444p@chr1:127574253..127574264, +
5.09e-35FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_e9e4477c3be5ab720c922f9f333d51ccp7@Gpr39
5.09e-35FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_e9e4477c3be5ab720c922f9f333d51ccp7@Gpr39
5.98e-35FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_f578b5763413528b12b9cbd262813334p11@Gpr39
5.98e-35FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_f578b5763413528b12b9cbd262813334p11@Gpr39
7.03e-35FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_b2f568332c16477086da0a730511e333p@chrX:160839768..160839780, +
7.03e-35FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_b2f568332c16477086da0a730511e333p@chrX:160839768..160839780, +
9.95e-35FFCP PHASE1:Hg19::chr9:35685445..35685517,+#_b58d234b97cda58dd20ab20fa249f398p@chr9:35685445..35685517, +
9.95e-35FFCP PHASE2:Hg19::chr9:35685445..35685517,+#_b58d234b97cda58dd20ab20fa249f398p@chr9:35685445..35685517, +
1.33e-34FFCP PHASE2:Mm9::chr1:127573462..127573472,+#_c04a62734d68952a8fe327a0325f9ebdp8@Gpr39
1.33e-34FFCP PHASE1:Mm9::chr1:127573462..127573472,+#_c04a62734d68952a8fe327a0325f9ebdp8@Gpr39
1.89e-34FFCP PHASE2:Hg19::chr9:35684475..35684520,+#_954169b314668e6cf33930435316d284p@chr9:35684475..35684520, +
1.89e-34FFCP PHASE1:Hg19::chr9:35684475..35684520,+#_954169b314668e6cf33930435316d284p@chr9:35684475..35684520, +
4.48e-34FFCP PHASE1:Hg19::chr14:94595800..94595811,-#_ad3b4b0fcdce1e9a3d0f4f5dca1a1c1dp3@IFI27L2
4.48e-34FFCP PHASE2:Hg19::chr14:94595800..94595811,-#_ad3b4b0fcdce1e9a3d0f4f5dca1a1c1dp3@IFI27L2
5.0e-34FFCP PHASE2:Hg19::chr7:102553470..102553487,+#_e9189c9b907fbfb9a66cd23148ab2933p2@LRRC17
5.0e-34FFCP PHASE1:Hg19::chr7:102553470..102553487,+#_e9189c9b907fbfb9a66cd23148ab2933p2@LRRC17
2.06e-33FFCP PHASE1:Hg19::chr9:35689148..35689192,+#_73f51c94d50aedc7d930c08201d2f7c5p@chr9:35689148..35689192, +
2.06e-33FFCP PHASE2:Hg19::chr9:35689148..35689192,+#_73f51c94d50aedc7d930c08201d2f7c5p@chr9:35689148..35689192, +
7.56e-33FFCP PHASE2:Hg19::chr7:102553430..102553456,+#_1ca3e842a173f23a346c5b1e59e66d08p1@LRRC17
7.56e-33FFCP PHASE1:Hg19::chr7:102553430..102553456,+#_1ca3e842a173f23a346c5b1e59e66d08p1@LRRC17
1.21e-32FFCP PHASE1:Hg19::chr21:47518695..47518709,+#_6433e708e059cb4b52b477fe9ed418a0p6@COL6A2
1.21e-32FFCP PHASE2:Hg19::chr21:47518695..47518709,+#_6433e708e059cb4b52b477fe9ed418a0p6@COL6A2
2.74e-32FFCP PHASE2:Hg19::chr21:47518637..47518688,+#_acaa17c59368236608eb0ba00ae4e9bep2@COL6A2
2.74e-32FFCP PHASE1:Hg19::chr21:47518637..47518688,+#_acaa17c59368236608eb0ba00ae4e9bep2@COL6A2
3.94e-32FFCP PHASE2:Mm9::chr7:96658543..96658553,-#_b3587ca55dec6f19dbee4d7265bdc55ap@chr7:96658543..96658553, -
3.94e-32FFCP PHASE1:Mm9::chr7:96658543..96658553,-#_b3587ca55dec6f19dbee4d7265bdc55ap@chr7:96658543..96658553, -
5.83e-32FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_f81bc3aabd1a2591ad4e5e7caf6a31a2p@chr4:74703497..74703511, +
5.83e-32FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_f81bc3aabd1a2591ad4e5e7caf6a31a2p@chr4:74703497..74703511, +
9.0e-32FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_77c014de1ac030311213da3e049f3507p@chr2:134548872..134548879, -
9.0e-32FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_77c014de1ac030311213da3e049f3507p@chr2:134548872..134548879, -
9.7e-32FFCP PHASE1:Hg19::chr9:35685273..35685313,+#_a2fd57a29142384f045bec046b7d1930p@chr9:35685273..35685313, +
9.7e-32FFCP PHASE2:Hg19::chr9:35685273..35685313,+#_a2fd57a29142384f045bec046b7d1930p@chr9:35685273..35685313, +
1.33e-31FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_75c15ce5eccdfb7c41f0241228be0348p@chr7:91081998..91082010, -
1.33e-31FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_75c15ce5eccdfb7c41f0241228be0348p@chr7:91081998..91082010, -
1.33e-31FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_75c15ce5eccdfb7c41f0241228be0348p2@Il6
1.33e-31FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_75c15ce5eccdfb7c41f0241228be0348p2@Il6
1.59e-31FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_43eb515857562e689fd9ec25cc373ed4p@chr10:67598037..67598049, -
1.59e-31FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_43eb515857562e689fd9ec25cc373ed4p@chr10:67598037..67598049, -
2.72e-31FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_e3a130ac250e466f2e722f9feea4fff4p@chr2:65009852..65009866, -
2.72e-31FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_e3a130ac250e466f2e722f9feea4fff4p@chr2:65009852..65009866, -
2.8e-31FFCP PHASE2:Mm9::chr18:52678391..52678395,-#_51433d1d79b88490b6ee2a66ef20b357p@chr18:52678391..52678395, -
2.8e-31FFCP PHASE1:Mm9::chr18:52678391..52678395,-#_51433d1d79b88490b6ee2a66ef20b357p@chr18:52678391..52678395, -
7.65e-31FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_34156a47cda78b003d4929ee58a21e1fp@chr6:91222095..91222107, +
7.65e-31FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_34156a47cda78b003d4929ee58a21e1fp@chr6:91222095..91222107, +
9.72e-31FFCP PHASE2:Hg19::chr1:79472477..79472510,-#_4347bc7c7cdb10ff571457620e4e7649p2@ELTD1
9.72e-31FFCP PHASE1:Hg19::chr1:79472477..79472510,-#_4347bc7c7cdb10ff571457620e4e7649p2@ELTD1
1.01e-30FFCP PHASE2:Hg19::chr7:100773764..100773799,-#_6d3b33ff7e5a0db8d55bc274ff05b86ep@chr7:100773764..100773799, -
1.01e-30FFCP PHASE2:Mm9::chr5:114822634..114822665,-#_c88761af5d34075a84eab06751929458p9@Kctd10
1.01e-30FFCP PHASE1:Mm9::chr5:114822634..114822665,-#_c88761af5d34075a84eab06751929458p9@Kctd10
1.01e-30FFCP PHASE1:Hg19::chr7:100773764..100773799,-#_6d3b33ff7e5a0db8d55bc274ff05b86ep@chr7:100773764..100773799, -
1.17e-30FFCP PHASE1:Mm9::chr1:127573773..127573786,+#_1967969f3518208a9362908a0af8c6a0p6@Gpr39
1.17e-30FFCP PHASE2:Mm9::chr1:127573773..127573786,+#_1967969f3518208a9362908a0af8c6a0p6@Gpr39
1.26e-30FFCP PHASE2:Hg19::chr12:53491743..53491754,+#_3f49744d867ab382ce8820777c8ae172p1@AK074416
1.26e-30FFCP PHASE1:Hg19::chr12:53491743..53491754,+#_3f49744d867ab382ce8820777c8ae172p1@AK074416
1.4e-30FFCP PHASE2:Hg19::chr7:93516035..93516056,+#_984280c55f41daa9ac7957d3bdee076ep1@CU675118
1.4e-30FFCP PHASE1:Hg19::chr7:93516035..93516056,+#_984280c55f41daa9ac7957d3bdee076ep1@CU675118
1.8e-30FFCP PHASE2:Hg19::chr21:47532318..47532355,+#_6c9dc1fb5b75decefa61c0634f5d4f9ep8@COL6A2
1.8e-30FFCP PHASE1:Hg19::chr21:47532318..47532355,+#_6c9dc1fb5b75decefa61c0634f5d4f9ep8@COL6A2
2.01e-30FFCP PHASE2:Hg19::chr2:33359687..33359717,+#_483d5b43b17ce503e580b47c8e3ba23dp2@LTBP1
2.01e-30FFCP PHASE1:Hg19::chr2:33359687..33359717,+#_483d5b43b17ce503e580b47c8e3ba23dp2@LTBP1
3.87e-30FFCP PHASE1:Hg19::chr21:47542827..47542859,-#_a36e624e49dc93e74544923e642a22f2p@chr21:47542827..47542859, -
3.87e-30FFCP PHASE2:Hg19::chr21:47542827..47542859,-#_a36e624e49dc93e74544923e642a22f2p@chr21:47542827..47542859, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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