Personal tools

UBERON:0003457: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0003457
|alt_id=
|name=head bone
|namespace=
|def="A bone that is part of a head [Obol]." [OBOL:automatic]
|xref=MA:0000576;;SCTID:118646007
|is_a=UBERON:0007914
|synonym="adult head bone" EXACT [OBOL:automatic];;"adult head bone organ" EXACT [OBOL:automatic];;"bone of adult head" EXACT [OBOL:automatic];;"bone of head" EXACT [OBOL:automatic];;"bone organ of adult head" EXACT [OBOL:automatic];;"bone organ of head" EXACT [OBOL:automatic];;"head bone organ" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A bone that is part of a head [Obol]." [OBOL:automatic]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003457
|is_a=UBERON:0007914
|is_obsolete=
|located_in=
|located_in=
|name=head bone
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000033
|part_of=UBERON:0000033
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="adult head bone" EXACT [OBOL:automatic];;"adult head bone organ" EXACT [OBOL:automatic];;"bone of adult head" EXACT [OBOL:automatic];;"bone of head" EXACT [OBOL:automatic];;"bone organ of adult head" EXACT [OBOL:automatic];;"bone organ of head" EXACT [OBOL:automatic];;"head bone organ" EXACT [OBOL:automatic]
|union_of=
|xref=MA:0000576;;SCTID:118646007
}}
}}

Latest revision as of 17:40, 12 September 2014

Name:head bone
Namespace:FANTOM
Definition:"A bone that is part of a head [Obol]." [OBOL:automatic]
Xrefs:
links:

MA:0000576

SCTID:118646007
Synonyms: "adult head bone" EXACT [OBOL:automatic]
"adult head bone organ" EXACT [OBOL:automatic]
"bone of adult head" EXACT [OBOL:automatic]
"bone of head" EXACT [OBOL:automatic]
"bone organ of adult head" EXACT [OBOL:automatic]
"bone organ of head" EXACT [OBOL:automatic]
"head bone organ" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0007914(head or neck bone)
part_of:UBERON:0000033(head)



Children

is a:UBERON:0002397 (maxilla),UBERON:0003462 (facial bone),UBERON:0004766 (cranial bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)

Mouse (Mus musculus)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003457 (head bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_053239a5c279b55de3cd36b9b14b37cbp14@C17orf67
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_053239a5c279b55de3cd36b9b14b37cbp14@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_a5461e78606393fc6e4c26b3fd452e96p11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_a5461e78606393fc6e4c26b3fd452e96p13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_a5461e78606393fc6e4c26b3fd452e96p12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_a5461e78606393fc6e4c26b3fd452e96p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_a5461e78606393fc6e4c26b3fd452e96p11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_a5461e78606393fc6e4c26b3fd452e96p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_a5461e78606393fc6e4c26b3fd452e96p12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_a5461e78606393fc6e4c26b3fd452e96p13@C17orf67
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_df4e2f44fb501671f107a758dc1e06a1p1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_df4e2f44fb501671f107a758dc1e06a1p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_df4e2f44fb501671f107a758dc1e06a1p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_df4e2f44fb501671f107a758dc1e06a1p@chr6:113251606..113251613, +
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_df4e2f44fb501671f107a758dc1e06a1p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_df4e2f44fb501671f107a758dc1e06a1p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_df4e2f44fb501671f107a758dc1e06a1p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_df4e2f44fb501671f107a758dc1e06a1p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_df4e2f44fb501671f107a758dc1e06a1p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_df4e2f44fb501671f107a758dc1e06a1p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_df4e2f44fb501671f107a758dc1e06a1p4@Chrna10
1.87e-86FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_df4e2f44fb501671f107a758dc1e06a1p@chr11:75421384..75421397, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_df4e2f44fb501671f107a758dc1e06a1p1@Otol1
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_df4e2f44fb501671f107a758dc1e06a1p4@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_df4e2f44fb501671f107a758dc1e06a1p3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_df4e2f44fb501671f107a758dc1e06a1p2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_df4e2f44fb501671f107a758dc1e06a1p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_df4e2f44fb501671f107a758dc1e06a1p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_df4e2f44fb501671f107a758dc1e06a1p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_df4e2f44fb501671f107a758dc1e06a1p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_df4e2f44fb501671f107a758dc1e06a1p1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_df4e2f44fb501671f107a758dc1e06a1p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_df4e2f44fb501671f107a758dc1e06a1p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_df4e2f44fb501671f107a758dc1e06a1p5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_df4e2f44fb501671f107a758dc1e06a1p10@Otof
1.87e-86FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_df4e2f44fb501671f107a758dc1e06a1p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_df4e2f44fb501671f107a758dc1e06a1p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_df4e2f44fb501671f107a758dc1e06a1p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_df4e2f44fb501671f107a758dc1e06a1p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_df4e2f44fb501671f107a758dc1e06a1p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_df4e2f44fb501671f107a758dc1e06a1p12@B3galt5
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_df4e2f44fb501671f107a758dc1e06a1p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_df4e2f44fb501671f107a758dc1e06a1p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_df4e2f44fb501671f107a758dc1e06a1p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_df4e2f44fb501671f107a758dc1e06a1p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_df4e2f44fb501671f107a758dc1e06a1p2@Plscr5
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_df4e2f44fb501671f107a758dc1e06a1p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_df4e2f44fb501671f107a758dc1e06a1p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_df4e2f44fb501671f107a758dc1e06a1p7@Pkn3
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_df4e2f44fb501671f107a758dc1e06a1p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_df4e2f44fb501671f107a758dc1e06a1p3@Strc
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_df4e2f44fb501671f107a758dc1e06a1p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_df4e2f44fb501671f107a758dc1e06a1p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_df4e2f44fb501671f107a758dc1e06a1p15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_df4e2f44fb501671f107a758dc1e06a1p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_df4e2f44fb501671f107a758dc1e06a1p4@Tecta
1.87e-86FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_df4e2f44fb501671f107a758dc1e06a1p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_df4e2f44fb501671f107a758dc1e06a1p3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207983..42207995,-#_df4e2f44fb501671f107a758dc1e06a1p3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_df4e2f44fb501671f107a758dc1e06a1p1@Strc
1.87e-86FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_df4e2f44fb501671f107a758dc1e06a1p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_df4e2f44fb501671f107a758dc1e06a1p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_df4e2f44fb501671f107a758dc1e06a1p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_df4e2f44fb501671f107a758dc1e06a1p1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_df4e2f44fb501671f107a758dc1e06a1p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_df4e2f44fb501671f107a758dc1e06a1p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_df4e2f44fb501671f107a758dc1e06a1p2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_df4e2f44fb501671f107a758dc1e06a1p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_df4e2f44fb501671f107a758dc1e06a1p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_df4e2f44fb501671f107a758dc1e06a1p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_df4e2f44fb501671f107a758dc1e06a1p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_df4e2f44fb501671f107a758dc1e06a1p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_df4e2f44fb501671f107a758dc1e06a1p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_df4e2f44fb501671f107a758dc1e06a1p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_df4e2f44fb501671f107a758dc1e06a1p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_df4e2f44fb501671f107a758dc1e06a1p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr19:55255289..55255299,+#_df4e2f44fb501671f107a758dc1e06a1p2@Tectb
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_df4e2f44fb501671f107a758dc1e06a1p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_df4e2f44fb501671f107a758dc1e06a1p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_df4e2f44fb501671f107a758dc1e06a1p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_df4e2f44fb501671f107a758dc1e06a1p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_df4e2f44fb501671f107a758dc1e06a1p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_df4e2f44fb501671f107a758dc1e06a1p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_df4e2f44fb501671f107a758dc1e06a1p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_df4e2f44fb501671f107a758dc1e06a1p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_df4e2f44fb501671f107a758dc1e06a1p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_df4e2f44fb501671f107a758dc1e06a1p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_df4e2f44fb501671f107a758dc1e06a1p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_df4e2f44fb501671f107a758dc1e06a1p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_df4e2f44fb501671f107a758dc1e06a1p4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_df4e2f44fb501671f107a758dc1e06a1p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_df4e2f44fb501671f107a758dc1e06a1p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_df4e2f44fb501671f107a758dc1e06a1p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_df4e2f44fb501671f107a758dc1e06a1p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_df4e2f44fb501671f107a758dc1e06a1p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_df4e2f44fb501671f107a758dc1e06a1p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_df4e2f44fb501671f107a758dc1e06a1p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_df4e2f44fb501671f107a758dc1e06a1p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_df4e2f44fb501671f107a758dc1e06a1p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_df4e2f44fb501671f107a758dc1e06a1p@chr6:113251614..113251623, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003457&oldid=3277553"