UBERON:0003704: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="the passages within the liver for the conveyance of bile." [MP:0009497] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0003704 | |||
|is_a=UBERON:0002394 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=intrahepatic bile duct | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0002107 | |part_of=UBERON:0002107 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Duct that collects bile from the bile ductules and connects to the extrahepatic bile duct.[TAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Duct that collects bile from the bile ductules and connects to the extrahepatic bile duct.[TAO]" xsd:string | ||
| | |subset=vertebrate_core | ||
| | |synonym="bile duct intrahepatic part" EXACT [MA:0001630] | ||
|union_of= | |||
|xref=FMA:15766;;GAID:287;;MA:0001630;;MESH:A.03.159.183.158;;ncithesaurus:Intrahepatic_Bile_Duct;;SCTID:362193005;;TAO:0005169;;ZFA:0005169 | |||
}} | }} | ||
Latest revision as of 17:41, 12 September 2014
| Name: | intrahepatic bile duct | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "the passages within the liver for the conveyance of bile." [MP:0009497] | ||
| Xrefs: |
| ||
| Synonyms: | "bile duct intrahepatic part" EXACT [MA:0001630] | ||
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002394(bile duct) |
|---|---|
| part_of: | UBERON:0002107(liver) |
Children
| is a: | UBERON:0001282 (intralobular bile duct) |
|---|---|
| part of: | UBERON:0004823 (intrahepatic bile duct epithelium) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10536-107G5 (cholangiocellular carcinoma cell line:HuH-28)
- 10629-108H8
- 10630-108H9
- 11522-119I1
- 11602-120H9
- 11683-122H9
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003704 (intrahepatic bile duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr18:1101041..1101044,+#_5f3f84df9db817477685d6228117ad78 | p@chr18:1101041..1101044, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr13:88008760..88008795,+#_5f3f84df9db817477685d6228117ad78 | p@chr13:88008760..88008795, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:234545407..234545408,+#_5f3f84df9db817477685d6228117ad78 | p9@UGT1A10 |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:234545407..234545408,+#_5f3f84df9db817477685d6228117ad78 | p9@UGT1A10 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:234545437..234545446,+#_5f3f84df9db817477685d6228117ad78 | p4@UGT1A10 |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:234545437..234545446,+#_5f3f84df9db817477685d6228117ad78 | p4@UGT1A10 |
| 5.42e-195 | FFCP PHASE2:Hg19::chr21:45826350..45826387,+#_5f3f84df9db817477685d6228117ad78 | p22@TRPM2 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr21:45826350..45826387,+#_5f3f84df9db817477685d6228117ad78 | p22@TRPM2 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr11:77795673..77795689,-#_5f3f84df9db817477685d6228117ad78 | p@chr11:77795673..77795689, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:234545708..234545716,+#_5f3f84df9db817477685d6228117ad78 | p5@UGT1A10 |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:234545708..234545716,+#_5f3f84df9db817477685d6228117ad78 | p5@UGT1A10 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr18:1101041..1101044,+#_5f3f84df9db817477685d6228117ad78 | p@chr18:1101041..1101044, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr1:207059144..207059147,+#_5f3f84df9db817477685d6228117ad78 | p@chr1:207059144..207059147, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr11:77795673..77795689,-#_5f3f84df9db817477685d6228117ad78 | p@chr11:77795673..77795689, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr1:207059144..207059147,+#_5f3f84df9db817477685d6228117ad78 | p@chr1:207059144..207059147, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:166513744..166513789,+#_5f3f84df9db817477685d6228117ad78 | p@chr4:166513744..166513789, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr13:88008760..88008795,+#_5f3f84df9db817477685d6228117ad78 | p@chr13:88008760..88008795, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:166513744..166513789,+#_5f3f84df9db817477685d6228117ad78 | p@chr4:166513744..166513789, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:98605781..98605792,+#_f193972bbb65bd97331ba8abfdd14acb | p34@IPO5 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:32522832..32522842,-#_f193972bbb65bd97331ba8abfdd14acb | p@chr6:32522832..32522842, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:32522832..32522842,-#_f193972bbb65bd97331ba8abfdd14acb | p@chr6:32522832..32522842, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:158155402..158155409,-#_f193972bbb65bd97331ba8abfdd14acb | p3@ENST00000410472 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:158155402..158155409,-#_f193972bbb65bd97331ba8abfdd14acb | p3@ENST00000410472 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr11:73874637..73874639,+#_f193972bbb65bd97331ba8abfdd14acb | p@chr11:73874637..73874639, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr11:73874637..73874639,+#_f193972bbb65bd97331ba8abfdd14acb | p@chr11:73874637..73874639, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:98605781..98605792,+#_f193972bbb65bd97331ba8abfdd14acb | p34@IPO5 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:52786654..52786665,-#_f193972bbb65bd97331ba8abfdd14acb | p@chr5:52786654..52786665, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:52786654..52786665,-#_f193972bbb65bd97331ba8abfdd14acb | p@chr5:52786654..52786665, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr11:7904519..7904534,-#_3a3852674066ad035c6857506a88baae | p1@ENST00000529488, p1@ENST00000533634 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:158005569..158005571,-#_3a3852674066ad035c6857506a88baae | p@chr2:158005569..158005571, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:158005569..158005571,-#_3a3852674066ad035c6857506a88baae | p@chr2:158005569..158005571, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr11:7904519..7904534,-#_3a3852674066ad035c6857506a88baae | p1@ENST00000529488, p1@ENST00000533634 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr9:26936427..26936432,-#_3a3852674066ad035c6857506a88baae | p@chr9:26936427..26936432, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr9:26936427..26936432,-#_3a3852674066ad035c6857506a88baae | p@chr9:26936427..26936432, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chrX:147062891..147062896,+#_3a3852674066ad035c6857506a88baae | p3@FMR1NB |
| 2.55e-98 | FFCP PHASE1:Hg19::chrX:147062891..147062896,+#_3a3852674066ad035c6857506a88baae | p3@FMR1NB |
| 1.23e-66 | FFCP PHASE1:Hg19::chr15:32969649..32969656,+#_f690f83f672dc35bb5466b9a99955ce9 | p14@SCG5 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr4:33469231..33469240,+#_f690f83f672dc35bb5466b9a99955ce9 | p@chr4:33469231..33469240, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr4:33469231..33469240,+#_f690f83f672dc35bb5466b9a99955ce9 | p@chr4:33469231..33469240, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chr15:32969649..32969656,+#_f690f83f672dc35bb5466b9a99955ce9 | p14@SCG5 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr6:117747000..117747010,-#_f690f83f672dc35bb5466b9a99955ce9 | p9@ROS1 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr6:117747000..117747010,-#_f690f83f672dc35bb5466b9a99955ce9 | p9@ROS1 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr2:234545393..234545403,+#_f690f83f672dc35bb5466b9a99955ce9 | p3@UGT1A10 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr2:234545393..234545403,+#_f690f83f672dc35bb5466b9a99955ce9 | p3@UGT1A10 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr4:33469257..33469268,+#_4a2256a3c3b441decb6c33b48e82a305 | p@chr4:33469257..33469268, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr4:33469257..33469268,+#_4a2256a3c3b441decb6c33b48e82a305 | p@chr4:33469257..33469268, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr22:49769903..49769910,+#_20183149fb691be78de7d874338bafe9 | p@chr22:49769903..49769910, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr22:49769903..49769910,+#_20183149fb691be78de7d874338bafe9 | p@chr22:49769903..49769910, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr3:106556772..106556810,-#_d7c1464ce7eb9ac2895313c2ad47fb4c | p@chr3:106556772..106556810, - |
| 1.46e-50 | FFCP PHASE1:Hg19::chr6:32522809..32522827,-#_d7c1464ce7eb9ac2895313c2ad47fb4c | p@chr6:32522809..32522827, - |
| 1.46e-50 | FFCP PHASE2:Hg19::chr6:72255927..72255937,+#_d7c1464ce7eb9ac2895313c2ad47fb4c | p@chr6:72255927..72255937, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr18:514455..514467,+#_d7c1464ce7eb9ac2895313c2ad47fb4c | p@chr18:514455..514467, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr6:72255927..72255937,+#_d7c1464ce7eb9ac2895313c2ad47fb4c | p@chr6:72255927..72255937, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr3:106556772..106556810,-#_d7c1464ce7eb9ac2895313c2ad47fb4c | p@chr3:106556772..106556810, - |
| 1.46e-50 | FFCP PHASE2:Hg19::chr6:32522809..32522827,-#_d7c1464ce7eb9ac2895313c2ad47fb4c | p@chr6:32522809..32522827, - |
| 1.46e-50 | FFCP PHASE1:Hg19::chr18:514455..514467,+#_d7c1464ce7eb9ac2895313c2ad47fb4c | p@chr18:514455..514467, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr11:77794459..77794475,+#_8dee6300c577ea5b040c52ba583fb7a0 | p@chr11:77794459..77794475, + |
| 2.42e-50 | FFCP PHASE2:Hg19::chr11:77794459..77794475,+#_8dee6300c577ea5b040c52ba583fb7a0 | p@chr11:77794459..77794475, + |
| 2.42e-50 | FFCP PHASE2:Hg19::chr4:5526611..5526614,-#_8dee6300c577ea5b040c52ba583fb7a0 | p@chr4:5526611..5526614, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr4:5526611..5526614,-#_8dee6300c577ea5b040c52ba583fb7a0 | p@chr4:5526611..5526614, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr2:187867941..187867952,+#_8dee6300c577ea5b040c52ba583fb7a0 | p1@ENST00000453517 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr2:187867941..187867952,+#_8dee6300c577ea5b040c52ba583fb7a0 | p1@ENST00000453517 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr11:77792240..77792241,+#_35bccda86283f6ff85226dca72f64b23 | p@chr11:77792240..77792241, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr20:50479417..50479427,-#_35bccda86283f6ff85226dca72f64b23 | p2@ENST00000438154 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr20:50479417..50479427,-#_35bccda86283f6ff85226dca72f64b23 | p2@ENST00000438154 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr21:29774431..29774441,-#_35bccda86283f6ff85226dca72f64b23 | p@chr21:29774431..29774441, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr21:29774431..29774441,-#_35bccda86283f6ff85226dca72f64b23 | p@chr21:29774431..29774441, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr22:49769966..49769971,+#_35bccda86283f6ff85226dca72f64b23 | p@chr22:49769966..49769971, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr22:49769966..49769971,+#_35bccda86283f6ff85226dca72f64b23 | p@chr22:49769966..49769971, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr21:10597500..10597509,-#_35bccda86283f6ff85226dca72f64b23 | p2@uc011abv.1 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr21:10597500..10597509,-#_35bccda86283f6ff85226dca72f64b23 | p2@uc011abv.1 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr11:77792240..77792241,+#_35bccda86283f6ff85226dca72f64b23 | p@chr11:77792240..77792241, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr5:5146235..5146246,+#_26333e8591f41cbf8938445f024aecc7 | p7@ADAMTS16 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr5:5146235..5146246,+#_26333e8591f41cbf8938445f024aecc7 | p7@ADAMTS16 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr12:19928351..19928358,+#_26333e8591f41cbf8938445f024aecc7 | p2@ENST00000535764 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr12:19928351..19928358,+#_26333e8591f41cbf8938445f024aecc7 | p2@ENST00000535764 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr21:28899015..28899027,+#_26333e8591f41cbf8938445f024aecc7 | p@chr21:28899015..28899027, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr21:28899015..28899027,+#_26333e8591f41cbf8938445f024aecc7 | p@chr21:28899015..28899027, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chrX:70798285..70798290,+#_26333e8591f41cbf8938445f024aecc7 | p1@ACRC |
| 6.58e-50 | FFCP PHASE2:Hg19::chrX:70798285..70798290,+#_26333e8591f41cbf8938445f024aecc7 | p1@ACRC |
| 6.62e-41 | FFCP PHASE1:Hg19::chr4:166513830..166513834,+#_5509ce53096dc11048723ee444ed73f3 | p@chr4:166513830..166513834, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr4:166513830..166513834,+#_5509ce53096dc11048723ee444ed73f3 | p@chr4:166513830..166513834, + |
| 6.62e-41 | FFCP PHASE1:Hg19::chr18:514484..514495,+#_5509ce53096dc11048723ee444ed73f3 | p@chr18:514484..514495, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chrX:147062877..147062885,+#_5509ce53096dc11048723ee444ed73f3 | p2@FMR1NB |
| 6.62e-41 | FFCP PHASE1:Hg19::chrX:147062877..147062885,+#_5509ce53096dc11048723ee444ed73f3 | p2@FMR1NB |
| 6.62e-41 | FFCP PHASE1:Hg19::chr3:98275000..98275016,-#_5509ce53096dc11048723ee444ed73f3 | p@chr3:98275000..98275016, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr6:75912602..75912613,-#_5509ce53096dc11048723ee444ed73f3 | p25@COL12A1 |
| 6.62e-41 | FFCP PHASE2:Hg19::chr3:98275000..98275016,-#_5509ce53096dc11048723ee444ed73f3 | p@chr3:98275000..98275016, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr6:75912602..75912613,-#_5509ce53096dc11048723ee444ed73f3 | p25@COL12A1 |
| 6.62e-41 | FFCP PHASE2:Hg19::chr18:514484..514495,+#_5509ce53096dc11048723ee444ed73f3 | p@chr18:514484..514495, + |
| 6.62e-41 | FFCP PHASE1:Hg19::chr2:158155450..158155474,-#_5509ce53096dc11048723ee444ed73f3 | p1@ENST00000410472 |
| 6.62e-41 | FFCP PHASE2:Hg19::chr2:158155450..158155474,-#_5509ce53096dc11048723ee444ed73f3 | p1@ENST00000410472 |
| 6.62e-41 | FFCP PHASE1:Hg19::chr18:1099004..1099011,+#_5509ce53096dc11048723ee444ed73f3 | p@chr18:1099004..1099011, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr18:1099004..1099011,+#_5509ce53096dc11048723ee444ed73f3 | p@chr18:1099004..1099011, + |
| 6.62e-41 | FFCP PHASE1:Hg19::chr2:38402050..38402059,+#_5509ce53096dc11048723ee444ed73f3 | p@chr2:38402050..38402059, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr2:38402050..38402059,+#_5509ce53096dc11048723ee444ed73f3 | p@chr2:38402050..38402059, + |
| 9.91e-41 | FFCP PHASE1:Hg19::chr12:127737083..127737103,-#_eb96ce3891695b7054abd246abec08ff | p@chr12:127737083..127737103, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr12:127737083..127737103,-#_eb96ce3891695b7054abd246abec08ff | p@chr12:127737083..127737103, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr6:67772946..67772961,+#_eb96ce3891695b7054abd246abec08ff | p@chr6:67772946..67772961, + |
| 9.91e-41 | FFCP PHASE1:Hg19::chr6:67772946..67772961,+#_eb96ce3891695b7054abd246abec08ff | p@chr6:67772946..67772961, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Duct that collects bile from the bile ductules and connects to the extrahepatic bile duct.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
