UBERON:0007798: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=in both MA and BTO, the arterial system and venous sytem are subtypes of the vascular system | |comment=in both MA and BTO, the arterial system and venous sytem are subtypes of the vascular system | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0007798 | |||
|is_a=UBERON:0000467 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=vascular system | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0004535 | |part_of=UBERON:0004535 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref=BTO:0001085;;EHDAA2:0004520;;MA:0002718;;ncithesaurus:Vascular_System | |||
}} | }} | ||
Latest revision as of 18:02, 12 September 2014
| Name: | vascular system | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Xrefs: |
| ||
| Comments: | in both MA and BTO, the arterial system and venous sytem are subtypes of the vascular system |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000467(anatomical system) |
|---|---|
| part_of: | UBERON:0004535(cardiovascular system) |
Children
| is a: | UBERON:0004571 (systemic arterial system),UBERON:0004572 (arterial system),UBERON:0004582 (venous system),UBERON:0008886 (pulmonary vascular system) |
|---|---|
| part of: | UBERON:0002049 (vasculature),UBERON:0006558 (lymphatic part of lymphoid system) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10052-101G7 (aorta, adult, pool1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 10268-104D7 (eye - vitreous humor, donor1)
- 10296-104G8
- 10324-105A9
- 11207-116A1 (Endothelial Cells - Aortic, donor0)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
... further results Mouse (Mus musculus)
- 10052-101G7 (aorta, adult, pool1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 10268-104D7 (eye - vitreous humor, donor1)
- 10296-104G8
- 10324-105A9
- 11207-116A1 (Endothelial Cells - Aortic, donor0)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007798 (vascular system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.66e-91 | FFCP PHASE1:Hg19::chr8:55370720..55370733,+#_93a6d5dd92eaeea5ae1a6d450703b777 | p2@SOX17 |
| 8.66e-91 | FFCP PHASE2:Hg19::chr8:55370720..55370733,+#_93a6d5dd92eaeea5ae1a6d450703b777 | p2@SOX17 |
| 2.75e-85 | FFCP PHASE2:Hg19::chr12:96830430..96830450,+#_e3ca1b9535c1a35cd3a79aaded4ac1f1 | p@chr12:96830430..96830450, + |
| 2.75e-85 | FFCP PHASE1:Hg19::chr12:96830430..96830450,+#_e3ca1b9535c1a35cd3a79aaded4ac1f1 | p@chr12:96830430..96830450, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr8:69221163..69221172,+#_895aa78ce9b977ea2b1c9664bb308dc9 | p6@Npy1r |
| 1.65e-69 | FFCP PHASE2:Mm9::chr8:69221163..69221172,+#_895aa78ce9b977ea2b1c9664bb308dc9 | p6@Npy1r |
| 2.74e-69 | FFCP PHASE1:Hg19::chr1:186946626..186946652,+#_f66f7802c6353f537ec7cfe57f3a40c0 | p@chr1:186946626..186946652, + |
| 2.74e-69 | FFCP PHASE2:Hg19::chr1:186946626..186946652,+#_f66f7802c6353f537ec7cfe57f3a40c0 | p@chr1:186946626..186946652, + |
| 3.72e-67 | FFCP PHASE1:Hg19::chr1:21606171..21606188,-#_2fa41688a92df24798d81c3e05b380e5 | p10@ECE1 |
| 3.72e-67 | FFCP PHASE2:Hg19::chr1:21606171..21606188,-#_2fa41688a92df24798d81c3e05b380e5 | p10@ECE1 |
| 1.06e-65 | FFCP PHASE1:Hg19::chr3:30334038..30334060,+#_43cbe4f8ee0fee3b0b009023d155d694 | p@chr3:30334038..30334060, + |
| 1.06e-65 | FFCP PHASE2:Hg19::chr3:30334038..30334060,+#_43cbe4f8ee0fee3b0b009023d155d694 | p@chr3:30334038..30334060, + |
| 2.18e-64 | FFCP PHASE1:Hg19::chr14:63671393..63671437,+#_98028325cea240f672baf7590931e21b | p2@RHOJ |
| 2.18e-64 | FFCP PHASE2:Hg19::chr14:63671393..63671437,+#_98028325cea240f672baf7590931e21b | p2@RHOJ |
| 1.3e-63 | FFCP PHASE1:Hg19::chr4:145566841..145566862,+#_feaadca97932bbeae74439f7d8a7a7ee | p10@HHIP |
| 1.3e-63 | FFCP PHASE2:Hg19::chr4:145566841..145566862,+#_feaadca97932bbeae74439f7d8a7a7ee | p10@HHIP |
| 1.57e-63 | FFCP PHASE1:Hg19::chr10:4823096..4823144,-#_134c35d140a8cfa740d2b08f3a5f46e0 | p@chr10:4823096..4823144, - |
| 1.57e-63 | FFCP PHASE2:Hg19::chr10:4823096..4823144,-#_134c35d140a8cfa740d2b08f3a5f46e0 | p@chr10:4823096..4823144, - |
| 2.67e-63 | FFCP PHASE2:Hg19::chr5:54281535..54281547,-#_277e5d3521bac8c1c3d5bedf9f60fc81 | p2@ESM1 |
| 2.67e-63 | FFCP PHASE1:Hg19::chr5:54281535..54281547,-#_277e5d3521bac8c1c3d5bedf9f60fc81 | p2@ESM1 |
| 6.77e-60 | FFCP PHASE1:Hg19::chr4:145567563..145567572,+#_c0adf81d3cb205fb322ebb3990535b0b | p8@HHIP |
| 6.77e-60 | FFCP PHASE2:Hg19::chr4:145567563..145567572,+#_c0adf81d3cb205fb322ebb3990535b0b | p8@HHIP |
| 3.46e-57 | FFCP PHASE2:Hg19::chr4:70653649..70653665,-#_8af951e23d5d3088b2b785f6f7771559 | p4@SULT1B1 |
| 3.46e-57 | FFCP PHASE1:Hg19::chr4:70653649..70653665,-#_8af951e23d5d3088b2b785f6f7771559 | p4@SULT1B1 |
| 2.1e-56 | FFCP PHASE2:Hg19::chr5:54281512..54281517,-#_651bfefa1d5e9711b7bca1d213881f7b | p4@ESM1 |
| 2.1e-56 | FFCP PHASE1:Hg19::chr5:54281512..54281517,-#_651bfefa1d5e9711b7bca1d213881f7b | p4@ESM1 |
| 3.16e-56 | FFCP PHASE1:Hg19::chr4:145567374..145567390,+#_7d0a047fd5964f034fc3233ec6aebd61 | p6@HHIP |
| 3.16e-56 | FFCP PHASE2:Hg19::chr4:145567374..145567390,+#_7d0a047fd5964f034fc3233ec6aebd61 | p6@HHIP |
| 4.2e-56 | FFCP PHASE2:Mm9::chr8:69221150..69221161,+#_248f54092d96c8e7e23abdeacaf88d67 | p5@Npy1r |
| 4.2e-56 | FFCP PHASE2:Mm9::chr13:113253807..113253846,+#_248f54092d96c8e7e23abdeacaf88d67 | p4@Il6st |
| 4.2e-56 | FFCP PHASE1:Mm9::chr13:113253807..113253846,+#_248f54092d96c8e7e23abdeacaf88d67 | p4@Il6st |
| 4.2e-56 | FFCP PHASE1:Mm9::chr8:69221150..69221161,+#_248f54092d96c8e7e23abdeacaf88d67 | p5@Npy1r |
| 6.41e-56 | FFCP PHASE1:Hg19::chr12:105863636..105863650,+#_85a2254beb576b09403d96cedeb1bf6f | p@chr12:105863636..105863650, + |
| 6.41e-56 | FFCP PHASE2:Hg19::chr12:105863636..105863650,+#_85a2254beb576b09403d96cedeb1bf6f | p@chr12:105863636..105863650, + |
| 8.62e-56 | FFCP PHASE2:Hg19::chr5:150019857..150019868,+#_7725db74988c08ff1c7b17998f5d2b1c | p18@SYNPO |
| 8.62e-56 | FFCP PHASE1:Hg19::chr5:150019857..150019868,+#_7725db74988c08ff1c7b17998f5d2b1c | p18@SYNPO |
| 1.11e-55 | FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_228b8aea21434a8272b5eca6a0278f9f | p@chr2:65009852..65009866, - |
| 1.11e-55 | FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_228b8aea21434a8272b5eca6a0278f9f | p@chr2:65009852..65009866, - |
| 2.63e-55 | FFCP PHASE1:Hg19::chr4:70653673..70653688,-#_f5f6c02768bcdc65015a92a1367d98bc | p3@SULT1B1 |
| 2.63e-55 | FFCP PHASE2:Hg19::chr4:70653673..70653688,-#_f5f6c02768bcdc65015a92a1367d98bc | p3@SULT1B1 |
| 7.85e-55 | FFCP PHASE2:Hg19::chr4:86700590..86700615,+#_b0246646d5778b37d52bcab7f4ff2341 | p@chr4:86700590..86700615, + |
| 7.85e-55 | FFCP PHASE1:Hg19::chr4:86700590..86700615,+#_b0246646d5778b37d52bcab7f4ff2341 | p@chr4:86700590..86700615, + |
| 6.3e-54 | FFCP PHASE1:Hg19::chr7:22629318..22629324,+#_4db38c579ea7e68b318e629243e9f2c6 | p1@ENST00000439823 |
| 6.3e-54 | FFCP PHASE2:Hg19::chr7:22629318..22629324,+#_4db38c579ea7e68b318e629243e9f2c6 | p1@ENST00000439823 |
| 1.64e-52 | FFCP PHASE2:Mm9::chr17:87574327..87574332,+#_ee436e4738f372879be4851c9a75d0ac | p@chr17:87574327..87574332, + |
| 1.64e-52 | FFCP PHASE1:Mm9::chr2:112043522..112043530,-#_ee436e4738f372879be4851c9a75d0ac | p@chr2:112043522..112043530, - |
| 1.64e-52 | FFCP PHASE2:Mm9::chr8:69228447..69228492,+#_ee436e4738f372879be4851c9a75d0ac | p@chr8:69228447..69228492, + |
| 1.64e-52 | FFCP PHASE2:Mm9::chr11:50416871..50416882,+#_ee436e4738f372879be4851c9a75d0ac | p5@Adamts2 |
| 1.64e-52 | FFCP PHASE1:Mm9::chr17:14827154..14827169,-#_ee436e4738f372879be4851c9a75d0ac | p@chr17:14827154..14827169, - |
| 1.64e-52 | FFCP PHASE1:Mm9::chr17:14802633..14802637,-#_ee436e4738f372879be4851c9a75d0ac | p@chr17:14802633..14802637, - |
| 1.64e-52 | FFCP PHASE2:Mm9::chr17:14827154..14827169,-#_ee436e4738f372879be4851c9a75d0ac | p@chr17:14827154..14827169, - |
| 1.64e-52 | FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_ee436e4738f372879be4851c9a75d0ac | p@chr2:178190171..178190178, + |
| 1.64e-52 | FFCP PHASE2:Mm9::chr17:14802633..14802637,-#_ee436e4738f372879be4851c9a75d0ac | p@chr17:14802633..14802637, - |
| 1.64e-52 | FFCP PHASE1:Mm9::chrX:160839744..160839754,+#_ee436e4738f372879be4851c9a75d0ac | p@chrX:160839744..160839754, + |
| 1.64e-52 | FFCP PHASE1:Mm9::chr2:178190171..178190178,+#_ee436e4738f372879be4851c9a75d0ac | p@chr2:178190171..178190178, + |
| 1.64e-52 | FFCP PHASE2:Mm9::chr2:112043522..112043530,-#_ee436e4738f372879be4851c9a75d0ac | p@chr2:112043522..112043530, - |
| 1.64e-52 | FFCP PHASE2:Mm9::chrX:160839744..160839754,+#_ee436e4738f372879be4851c9a75d0ac | p@chrX:160839744..160839754, + |
| 1.64e-52 | FFCP PHASE1:Mm9::chr17:87574327..87574332,+#_ee436e4738f372879be4851c9a75d0ac | p@chr17:87574327..87574332, + |
| 1.64e-52 | FFCP PHASE1:Mm9::chr11:50416871..50416882,+#_ee436e4738f372879be4851c9a75d0ac | p5@Adamts2 |
| 1.64e-52 | FFCP PHASE1:Mm9::chr8:69228447..69228492,+#_ee436e4738f372879be4851c9a75d0ac | p@chr8:69228447..69228492, + |
| 1.86e-52 | FFCP PHASE1:Hg19::chr4:145567391..145567425,+#_5a5298e133ef652496967a44a83995b4 | p4@HHIP |
| 1.86e-52 | FFCP PHASE2:Hg19::chr4:145567391..145567425,+#_5a5298e133ef652496967a44a83995b4 | p4@HHIP |
| 2.0e-52 | FFCP PHASE2:Hg19::chr15:39423060..39423066,+#_6d96e7f0b199a50df01cb9a315ae0d9d | p@chr15:39423060..39423066, + |
| 2.0e-52 | FFCP PHASE1:Hg19::chr15:39423060..39423066,+#_6d96e7f0b199a50df01cb9a315ae0d9d | p@chr15:39423060..39423066, + |
| 3.35e-52 | FFCP PHASE2:Hg19::chr4:145567426..145567455,+#_d53b0fada1592938b01acba57e0b93d4 | p5@HHIP |
| 3.35e-52 | FFCP PHASE1:Hg19::chr4:145567426..145567455,+#_d53b0fada1592938b01acba57e0b93d4 | p5@HHIP |
| 6.86e-52 | FFCP PHASE1:Hg19::chr11:86649508..86649546,-#_e5c263bd803e5732ec03beaffbb3230b | p@chr11:86649508..86649546, - |
| 6.86e-52 | FFCP PHASE2:Hg19::chr11:86649508..86649546,-#_e5c263bd803e5732ec03beaffbb3230b | p@chr11:86649508..86649546, - |
| 7.74e-52 | FFCP PHASE2:Hg19::chr22:21138343..21138378,+#_a34e22a47838b3c5849e351968a8b581 | p@chr22:21138343..21138378, + |
| 7.74e-52 | FFCP PHASE1:Hg19::chr22:21138343..21138378,+#_a34e22a47838b3c5849e351968a8b581 | p@chr22:21138343..21138378, + |
| 1.23e-51 | FFCP PHASE1:Hg19::chr4:145567356..145567368,+#_6c3e09a964e34d74c315c77a319387a6 | p7@HHIP |
| 1.23e-51 | FFCP PHASE2:Hg19::chr4:145567356..145567368,+#_6c3e09a964e34d74c315c77a319387a6 | p7@HHIP |
| 1.92e-51 | FFCP PHASE1:Hg19::chr12:105863654..105863682,+#_6b142044a5678fbce3e4a8c8e61c133c | p@chr12:105863654..105863682, + |
| 1.92e-51 | FFCP PHASE2:Hg19::chr12:105863654..105863682,+#_6b142044a5678fbce3e4a8c8e61c133c | p@chr12:105863654..105863682, + |
| 5.09e-51 | FFCP PHASE1:Hg19::chr11:128562673..128562716,-#_1d92ac17c3f65612926bbe39e825e035 | p@chr11:128562673..128562716, - |
| 5.09e-51 | FFCP PHASE2:Hg19::chr11:128562673..128562716,-#_1d92ac17c3f65612926bbe39e825e035 | p@chr11:128562673..128562716, - |
| 2.43e-49 | FFCP PHASE2:Hg19::chr11:102667477..102667490,-#_affb5842dde9647ba1e9d1a89937cbec | p@chr11:102667477..102667490, - |
| 2.43e-49 | FFCP PHASE1:Hg19::chr11:102667477..102667490,-#_affb5842dde9647ba1e9d1a89937cbec | p@chr11:102667477..102667490, - |
| 4.78e-49 | FFCP PHASE2:Hg19::chr11:102668200..102668228,-#_42d3da53392e67a9a723ee25f6e38ba1 | p4@MMP1 |
| 4.78e-49 | FFCP PHASE1:Hg19::chr11:89224667..89224681,-#_42d3da53392e67a9a723ee25f6e38ba1 | p2@NOX4 |
| 4.78e-49 | FFCP PHASE2:Hg19::chr11:89224667..89224681,-#_42d3da53392e67a9a723ee25f6e38ba1 | p2@NOX4 |
| 4.78e-49 | FFCP PHASE1:Hg19::chr11:102668200..102668228,-#_42d3da53392e67a9a723ee25f6e38ba1 | p4@MMP1 |
| 4.86e-49 | FFCP PHASE1:Hg19::chr2:56216687..56216727,-#_2b3ddfb4370d265b9a2df913807321bc | p1@MIR216A |
| 4.86e-49 | FFCP PHASE2:Hg19::chr2:56216687..56216727,-#_2b3ddfb4370d265b9a2df913807321bc | p1@MIR216A |
| 7.23e-49 | FFCP PHASE1:Hg19::chr6:78171746..78171769,+#_dae4e4ba931e2331bb89f442285c4604 | p@chr6:78171746..78171769, + |
| 7.23e-49 | FFCP PHASE2:Hg19::chr6:78171746..78171769,+#_dae4e4ba931e2331bb89f442285c4604 | p@chr6:78171746..78171769, + |
| 9.08e-49 | FFCP PHASE2:Hg19::chr18:37550388..37550448,+#_dde80f92faea60dae1a161c87e2f5169 | p@chr18:37550388..37550448, + |
| 9.08e-49 | FFCP PHASE1:Hg19::chr18:37550388..37550448,+#_dde80f92faea60dae1a161c87e2f5169 | p@chr18:37550388..37550448, + |
| 1.11e-48 | FFCP PHASE2:Hg19::chr5:141060389..141060439,-#_730e8f5bcdba767978061227037094e3 | p3@ARAP3 |
| 1.11e-48 | FFCP PHASE1:Hg19::chr5:141060389..141060439,-#_730e8f5bcdba767978061227037094e3 | p3@ARAP3 |
| 3.35e-48 | FFCP PHASE2:Hg19::chr11:128563283..128563297,-#_b3656e6136e2545a025b7bb157349314 | p@chr11:128563283..128563297, - |
| 3.35e-48 | FFCP PHASE1:Hg19::chr11:128563283..128563297,-#_b3656e6136e2545a025b7bb157349314 | p@chr11:128563283..128563297, - |
| 7.2e-48 | FFCP PHASE1:Hg19::chr6:3753188..3753192,-#_da982fdc9684d419384a72e09bcf8107 | p@chr6:3753188..3753192, - |
| 7.2e-48 | FFCP PHASE2:Hg19::chr6:3753188..3753192,-#_da982fdc9684d419384a72e09bcf8107 | p@chr6:3753188..3753192, - |
| 2.13e-47 | FFCP PHASE2:Hg19::chr11:102668074..102668126,-#_a9d1671c94299e94dc90ff0586e86985 | p3@MMP1 |
| 2.13e-47 | FFCP PHASE1:Hg19::chr11:102668074..102668126,-#_a9d1671c94299e94dc90ff0586e86985 | p3@MMP1 |
| 4.1e-47 | FFCP PHASE1:Hg19::chr2:202563351..202563376,-#_3aa97ebe2e1c3b71dda2f745c00a3297 | p1@MPP4 |
| 4.1e-47 | FFCP PHASE2:Hg19::chr2:202563351..202563376,-#_3aa97ebe2e1c3b71dda2f745c00a3297 | p1@MPP4 |
| 6.17e-47 | FFCP PHASE1:Hg19::chr15:39542867..39542890,+#_f288236fe17b19ab578aed2b511f3110 | p1@C15orf54 |
| 6.17e-47 | FFCP PHASE2:Hg19::chr15:39542867..39542890,+#_f288236fe17b19ab578aed2b511f3110 | p1@C15orf54 |
