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{{UBERON
{{UBERON
|id=UBERON:0008907
|alt_id=
|name=dermal bone
|namespace=
|def="Skeletal element that forms superficially in the organism, usually in association with the ectoderm." [VSAO:0000130, VSAO:curator]
|xref=AAO:0010769;;TAO:0001590;;VSAO:0000130;;XAO:0004015;;ZFA:0001590
|is_a=UBERON:0007842
|synonym=
|comment=Note that other AOs are not yet in sync with this classification
|comment=Note that other AOs are not yet in sync with this classification
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Skeletal element that forms superficially in the organism, usually in association with the ectoderm." [VSAO:0000130, VSAO:curator]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0008907
|is_a=UBERON:0004756 ;;UBERON:0007842
|is_obsolete=
|located_in=
|located_in=
|name=dermal bone
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0010364
|part_of=UBERON:0010364
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Intramembranous bone that forms superficially in the organism.[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Intramembranous bone that forms superficially in the organism.[TAO]" xsd:string
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=AAO:0010769;;TAO:0001590;;VSAO:0000130;;XAO:0004015;;ZFA:0001590
}}
}}

Latest revision as of 18:04, 12 September 2014

Name:dermal bone
Namespace:FANTOM
Definition:"Skeletal element that forms superficially in the organism, usually in association with the ectoderm." [VSAO:0000130, VSAO:curator]
Xrefs:
links:

AAO:0010769
TAO:0001590
VSAO:0000130
XAO:0004015

ZFA:0001590
Comments:Note that other AOs are not yet in sync with this classification

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004756(dermal skeletal element),UBERON:0007842(membrane bone)
part_of:UBERON:0010364(dermal skeleton)



Children

is a:UBERON:0002244 (premaxilla),UBERON:0002397 (maxilla),UBERON:0011628 (early premaxilla)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0008907 (dermal bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_eba5667abfc4232fc077f7f10bb91841p14@C17orf67
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_eba5667abfc4232fc077f7f10bb91841p14@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_025c0b373f1b11329810c63b7b5e6fd7p12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_025c0b373f1b11329810c63b7b5e6fd7p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_025c0b373f1b11329810c63b7b5e6fd7p13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_025c0b373f1b11329810c63b7b5e6fd7p11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_025c0b373f1b11329810c63b7b5e6fd7p13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_025c0b373f1b11329810c63b7b5e6fd7p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_025c0b373f1b11329810c63b7b5e6fd7p12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_025c0b373f1b11329810c63b7b5e6fd7p11@C17orf67
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_caadc060c2ebe3156c6dd368a0397ae6p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_caadc060c2ebe3156c6dd368a0397ae6p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_caadc060c2ebe3156c6dd368a0397ae6p14@MAB21L2
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_caadc060c2ebe3156c6dd368a0397ae6p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_dc9bdabea3f0ba1c385ff61f88d38a78p@chr4:151505582..151505614, +
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_dc9bdabea3f0ba1c385ff61f88d38a78p@chr4:151505582..151505614, +
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_1051ae22fef6fd26be06e05ff7b62015p17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_1051ae22fef6fd26be06e05ff7b62015p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_1051ae22fef6fd26be06e05ff7b62015p9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_1051ae22fef6fd26be06e05ff7b62015p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_1051ae22fef6fd26be06e05ff7b62015p9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_1051ae22fef6fd26be06e05ff7b62015p17@RSRC1
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_ccde488b79c60c565bc7e17f1ec8ff5bp@chr8:57802672..57802682, -
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_ccde488b79c60c565bc7e17f1ec8ff5bp@chr8:57802672..57802682, -
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_a5af5a6170191ddd8bd610c6a382f0dep7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_a5af5a6170191ddd8bd610c6a382f0dep1@AK123925
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_a5af5a6170191ddd8bd610c6a382f0dep@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_a5af5a6170191ddd8bd610c6a382f0dep7@ALX1
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_a5af5a6170191ddd8bd610c6a382f0dep1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_a5af5a6170191ddd8bd610c6a382f0dep@chr5:75913767..75913778, -
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_19661a92a2f98c05bf1ba59f7594ef91p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_19661a92a2f98c05bf1ba59f7594ef91p23@FLT1
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_19661a92a2f98c05bf1ba59f7594ef91p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_19661a92a2f98c05bf1ba59f7594ef91p23@FLT1
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_c1ff24583d6621fd497c3dcc48c509dbp@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_c1ff24583d6621fd497c3dcc48c509dbp@chr8:57353779..57353790, -
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_c1ff24583d6621fd497c3dcc48c509dbp@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_c1ff24583d6621fd497c3dcc48c509dbp@chr8:57353779..57353790, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_c1ff24583d6621fd497c3dcc48c509dbp@chr8:57354143..57354152, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_c1ff24583d6621fd497c3dcc48c509dbp@chr8:57353666..57353675, -
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_6ca2a22276e3a8e175b0f3d1c9b2953ep8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_6ca2a22276e3a8e175b0f3d1c9b2953ep2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_6ca2a22276e3a8e175b0f3d1c9b2953ep8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_6ca2a22276e3a8e175b0f3d1c9b2953ep12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_6ca2a22276e3a8e175b0f3d1c9b2953ep2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_6ca2a22276e3a8e175b0f3d1c9b2953ep12@FAM65C
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_f2f9e16ca6588fce469fe79224335836p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_f2f9e16ca6588fce469fe79224335836p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_f2f9e16ca6588fce469fe79224335836p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_f2f9e16ca6588fce469fe79224335836p@chr16:67687543..67687559, -
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_bb9b9b7a57173c10a9b1c53a416daff0p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_bb9b9b7a57173c10a9b1c53a416daff0p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_bb9b9b7a57173c10a9b1c53a416daff0p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_bb9b9b7a57173c10a9b1c53a416daff0p@chr9:125165007..125165016, +
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_5f8c7fc73a8795c9e4f1d124b9c6a5dcp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_5f8c7fc73a8795c9e4f1d124b9c6a5dcp4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_5f8c7fc73a8795c9e4f1d124b9c6a5dcp5@PENK
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_5f8c7fc73a8795c9e4f1d124b9c6a5dcp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_5f8c7fc73a8795c9e4f1d124b9c6a5dcp5@PENK
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_5f8c7fc73a8795c9e4f1d124b9c6a5dcp4@CPZ
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_377beb0d329fb9f2314f6d04e429821dp9@SIX1
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_377beb0d329fb9f2314f6d04e429821dp9@SIX1
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_6ead36beb84d6fcf949519a558659b67p@chr6:134327986..134327991, -
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_6ead36beb84d6fcf949519a558659b67p@chr6:134327986..134327991, -
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_27fddfdb4966fba389a9599c99ecb676p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_27fddfdb4966fba389a9599c99ecb676p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_27fddfdb4966fba389a9599c99ecb676p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_27fddfdb4966fba389a9599c99ecb676p@chr13:58291223..58291226, +
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_bce62bc1afbd55951e6a831bcd07c566p12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_bce62bc1afbd55951e6a831bcd07c566p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_bce62bc1afbd55951e6a831bcd07c566p4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_bce62bc1afbd55951e6a831bcd07c566p12@FBN2
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_bce62bc1afbd55951e6a831bcd07c566p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_bce62bc1afbd55951e6a831bcd07c566p4@PLAC1
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_a42edbcfd66ee6a57b661cb8339990b8p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_a42edbcfd66ee6a57b661cb8339990b8p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_a42edbcfd66ee6a57b661cb8339990b8p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_a42edbcfd66ee6a57b661cb8339990b8p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_a42edbcfd66ee6a57b661cb8339990b8p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_a42edbcfd66ee6a57b661cb8339990b8p@chr8:57353804..57353821, -
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_1e348c6e67df755c977387b592e6a439p7@SHOX2
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_1e348c6e67df755c977387b592e6a439p10@ITGA8
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_1e348c6e67df755c977387b592e6a439p7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_1e348c6e67df755c977387b592e6a439p10@ITGA8
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_1524d5ddaeddd3d04dc48fa62e142ff1p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_1524d5ddaeddd3d04dc48fa62e142ff1p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_1524d5ddaeddd3d04dc48fa62e142ff1p@chr22:28193943..28193956, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_1524d5ddaeddd3d04dc48fa62e142ff1p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_1524d5ddaeddd3d04dc48fa62e142ff1p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_1524d5ddaeddd3d04dc48fa62e142ff1p@chr22:28193943..28193956, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_f33079d3842d5baf8c2ee18137a51306p@chr1:21904551..21904569, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_f33079d3842d5baf8c2ee18137a51306p@chr1:21904551..21904569, -
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_ff2b393a2346c87bc140f74a5fd388cfp18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_ff2b393a2346c87bc140f74a5fd388cfp@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_ff2b393a2346c87bc140f74a5fd388cfp@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_ff2b393a2346c87bc140f74a5fd388cfp18@MEF2D
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_ff2b393a2346c87bc140f74a5fd388cfp@chr14:89044406..89044416, +
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_ff2b393a2346c87bc140f74a5fd388cfp@chr8:57359975..57359992, -
4.2e-29FFCP PHASE1:Hg19::chr1:6615468..6615485,+#_406d8ce13dce720c8b66498ae41fa6bfp1@TAS1R1
4.2e-29FFCP PHASE2:Hg19::chr4:151503350..151503358,+#_406d8ce13dce720c8b66498ae41fa6bfp11@MAB21L2










Property "Property value" (as page type) with input value "UBPROP:0000001 "Intramembranous bone that forms superficially in the organism.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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