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{{UBERON
{{UBERON
|id=UBERON:0010259
|alt_id=
|name=1st arch mesenchyme from neural crest
|namespace=
|def=
|xref=EMAPA:16129
|is_a=UBERON:0010042;;UBERON:0010258;;UBERON:0010359
|synonym="mesenchyme derived from neural crest of mesenchyme of 1st arch" EXACT [EMAPA:16129]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0002342;;UBERON:0003852
|develops_from=UBERON:0002342;;UBERON:0003852
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010259
|is_a=UBERON:0010042 ;;UBERON:0010258 ;;UBERON:0010359
|is_obsolete=
|located_in=
|located_in=
|name=1st arch mesenchyme from neural crest
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0010042
|part_of=UBERON:0010042
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="mesenchyme derived from neural crest of mesenchyme of 1st arch" EXACT [EMAPA:16129]
|union_of=
|xref=EMAPA:16129
}}
}}

Latest revision as of 18:08, 12 September 2014

Name:1st arch mesenchyme from neural crest
Namespace:FANTOM
Xrefs:
links:
EMAPA:16129
Synonyms: "mesenchyme derived from neural crest of mesenchyme of 1st arch" EXACT [EMAPA:16129]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0010042(1st arch mesenchyme),UBERON:0010258(mesenchyme from rhombencephalic neural crest),UBERON:0010359(pharyngeal arch mesenchyme from neural crest)
develops_from:UBERON:0002342(neural crest),UBERON:0003852(rhombencephalon neural crest)
part_of:UBERON:0010042(1st arch mesenchyme)



Children

is a:UBERON:0010253 (1st arch maxillary mesenchyme from neural crest)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010259 (1st arch mesenchyme from neural crest), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data