FFCP PHASE1:Hg19::chr21:47422432..47422449,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1291 | |EntrezGene=1291 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2211 | |HGNC=2211 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=29bp_to_ENST00000486023,uc002zhw.1_5end | |association_with_transcript=29bp_to_ENST00000486023,uc002zhw.1_5end | ||
|cluster_id=chr21:47422432..47422449,+ | |||
|description=CAGE_peak_23_at_COL6A1_5end | |description=CAGE_peak_23_at_COL6A1_5end | ||
|id=chr21:47422432..47422449,+ | |id=chr21:47422432..47422449,+ | ||
|ontology_enrichment_celltype=CL:0002620;5.23e-09;23!CL:0002549;8.99e-09;2!CL:0002570;3.98e-08;8 | |ontology_enrichment_celltype=CL:0000055!1.83e-24!180;CL:0000057!4.62e-21!75;CL:0002620!8.70e-11!23;CL:0000680!2.66e-09!57;CL:0000056!2.66e-09!57;CL:0000355!2.66e-09!57;CL:0000183!5.25e-08!59;CL:0000187!6.23e-08!54;CL:0000393!2.71e-07!60;CL:0000211!2.71e-07!60;CL:0002334!4.48e-07!12 | ||
| | |ontology_enrichment_celltype_v019=CL:0002620;5.23e-09;23!CL:0002549;8.99e-09;2!CL:0002570;3.98e-08;8 | ||
|ontology_enrichment_disease=DOID:17;4.04e-07;5!DOID:450;4.04e-07;5!DOID:66;4.04e-07;5!DOID:423;4.04e-07;5!DOID:0080000;4.04e-07;5!DOID:11722;4.04e-07;5 | |ontology_enrichment_celltype_v019_2=CL:0000057,8.93e-13,76;CL:0002620,7.27e-09,23;CL:0002549,1.43e-08,2;CL:0002570,2.81e-08,8;CL:0000048,1.46e-07,427;CL:0000723,2.54e-07,433;CL:0000034,5.19e-07,441 | ||
|ontology_enrichment_uberon=UBERON:0005629;8.99e-09;2!UBERON:0005358;8.99e-09;2!UBERON:0001886;8.99e-09;2!UBERON:0004086;8.99e-09;2!UBERON:0005282;8.99e-09;2!UBERON:0005281;8.99e-09;2 | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;4.04e-07;5!DOID:450;4.04e-07;5!DOID:66;4.04e-07;5!DOID:423;4.04e-07;5!DOID:0080000;4.04e-07;5!DOID:11722;4.04e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,5.10e-07,5;DOID:450,5.10e-07,5;DOID:66,5.10e-07,5;DOID:423,5.10e-07,5;DOID:0080000,5.10e-07,5;DOID:11722,5.10e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.44e-13!83;UBERON:0002329!1.44e-13!83;UBERON:0003077!1.44e-13!83;UBERON:0003059!1.44e-13!83;UBERON:0007282!1.44e-13!83;UBERON:0009618!1.44e-13!83;UBERON:0007285!1.44e-13!83;UBERON:0004290!7.67e-12!70;UBERON:0003102!6.50e-11!95;UBERON:0002385!7.18e-10!63;UBERON:0001015!7.18e-10!63;UBERON:0000383!7.18e-10!63;UBERON:0005256!1.06e-09!143;UBERON:0001134!2.66e-09!61;UBERON:0002036!2.66e-09!61;UBERON:0003082!2.66e-09!61;UBERON:0000486!2.84e-09!82;UBERON:0002199!2.52e-08!45;UBERON:0002416!2.52e-08!45;UBERON:0002097!1.32e-07!40;UBERON:0000475!5.29e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0005629;8.99e-09;2!UBERON:0005358;8.99e-09;2!UBERON:0001886;8.99e-09;2!UBERON:0004086;8.99e-09;2!UBERON:0005282;8.99e-09;2!UBERON:0005281;8.99e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005629,1.43e-08,2;UBERON:0005358,1.43e-08,2;UBERON:0001886,1.43e-08,2;UBERON:0004086,1.43e-08,2;UBERON:0005282,1.43e-08,2;UBERON:0005281,1.43e-08,2;UBERON:0002097,1.48e-08,41;UBERON:0002199,2.15e-07,46;UBERON:0002416,2.15e-07,46;UBERON:0002384,9.93e-07,371 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.845726424575827,1.0007329835313,0,0.872338524100369,0,0.631719873426831,0,0,0,0,0,0.37129905888014,5.63375538737457,0.672325146451775,1.80808358407193,0,0.975865597581014,0,0.408001382488506,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31420598941885,0,0.383587685530591,0.361439152384566,1.50401373190767,1.01392563272577,0,0.486634870302636,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,1.01304409331664,0.529636723252875,0.860509862246441,0.709336764396714,0,0,0.24666754841716,0.622422070799533,0.134710672069688,0.326923806226917,1.05950199351452,5.18558332031999,0,0.312160076830321,0,1.19558944441441,0.587172493218824,0.161872944368132,0.421352420106746,0.61246251376468,0.491337269247072,0.826606249406124,0,1.97813543422845,0,1.43723628363248,0.336672227908132,0,0.554128230968366,0,0.612975591598039,0.150238058906597,0,0.358779271377724,1.06778694409284,1.27159140695737,1.50045548042201,0.721367704669072,0.257640540045629,0.37223371266318,1.68776332241266,0.292311015483596,0,1.01254888506529,1.2931684545505,2.13005755509969,0.10075209822764,0.508681776931463,0,0.272746120590835,0,0,0.132529768321485,0.116193942869518,0.207322110030741,0,0.72995471815166,0,1.28648187638577,1.38134921352481,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03993478527958,0,0,0.352226082707465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0.102827492703324,0,0,0.224262168690721,0,0.2933531432838,0.387815147273333,7.15312891703765,0,0,0,0,0,0.266422179016099,0.57191197463259,1.62786481617433,0,0,1.42156779497018,0,0,0,0,0,0,0,1.4377491329495,0,0,0.434343920002738,1.02738161275192,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0.49076596687656,0,1.62759014219841,1.45579603071565,0.713715955188647,0.946214490203608,1.63997980989798,0.601892199455438,0,0,0,0.368738337083406,0.695068915744663,0.783204629850962,1.02943027143257,0,0,0,0,0,0,0.496215615637554,0.153461973288062,0.561320188866147,0.384417447767103,0.511707249066704,1.28683136914886,0,0.771048469013278,0.532685175939381,0.410635780069046,0.519254429183621,1.27831416305955,0,0,0,0.803701137152247,0.910455840033585,1.04899531967539,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.0915694648183434,0,0.574265537996172,0,1.6068392984416,0.580024309752732,0.770243085573222,0.460511024178389,0.413509717453592,0.537101224341368,0.580066775656914,0.340906509664404,0.712256285173899,0,0,0,0,0,1.25924938732256,0.6970372701606,0.308033580176089,0,1.73986598415015,0.37064843820784,0,0,0,0.190630193923825,0.511795582622668,3.42351190427136,0.636406495851874,0,0,0.54907405947211,0,0.202182481573316,0,0,0.48763373908959,0,1.05650146756755,0.272999822815972,1.27264888758341,0,0.551365343546124,0,0,1.15755106853338,0,0,0,0,0.143411352204052,0,0.35667105148125,0.354761064070598,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,2.17727711363265,0,0,0,0.493217028184668,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0.173624994933292,0,0.241192877250816,0,0.110579259931225,0.295547618953547,0,0,0,0.692552326534174,0,0,0,0.108647371922008,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0.789168805698781,0,0,0.126373159256976,0,0,0,0,0.313932918407225,0,0.284609546029793,0,0,0,0,0.698906672968121,0.51595809741485,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0,0.19980960958213,0,0,0,0,0.124252535565433,0,0,0.104602846312333,0,0,0,0.136905378891993,0,0,0,0.279282401272254,0,0,0.199679000498991,0,0.223171457441873,0.335917362433631,2.88239906833923,0,0,0,0,0.0984274815147488,0,0,0.272406812223151,0.160753148465019,0.275078873194468,0,0,0,0,0,0,0.0524545881349981,0,0,0,0.714695326373367,0.662091970365432,0,0,1.72844298240254,0,0,0,0.170388021785422,0,0.146552233678082,0,0.129282956361551,0,0,0,0.106787412567695,0.157204305099666,0,0,0,0,0,0.544017803369474,0.2506898940227,0,0,0,0,0,0.250381861413,0,0.110929051536852,0,0,0,0,0,0.235265819698172,0,0,0.74627401443437,1.8697064787778,0,0.378806010550178,0.754703705257725,1.77962244319307,0.915360273587694,0.453692771289717,0.15543720058278,0.73927574994817,0.159296767163702,0.449803112163605,0.310525913752519,0,0.797525143673985,1.5652351854352,0.150257608997218,0.761610424337591,0,0.545545977607678,0.429642228169954,0,1.59238355479446,0,3.09056134664514,2.35724642136143,0,0,0,0.521988583930423,0,0,0.244736704506468,0.537266523244462,0.308801447160972,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0.982829546539238,0,0.211312123358627,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0.212574920101683,0,0,0.954013051960256,0,0,1.41070377476274,0.30624547735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| ||
|short_description=p23@COL6A1 | |short_description=p23@COL6A1 | ||
}} | }} |
Latest revision as of 22:19, 18 September 2015
Short description: | p23@COL6A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_23_at_COL6A1_5end |
Coexpression cluster: | NA |
Association with transcript: | 29bp_to_ENST00000486023, uc002zhw.1_5end |
EntrezGene: | COL6A1 |
HGNC: | 2211 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 8.93e-13 | 76 |
skin fibroblast | 7.27e-09 | 23 |
fibroblast of choroid plexus | 1.43e-08 | 2 |
mesenchymal stem cell of adipose | 2.81e-08 | 8 |
multi fate stem cell | 1.46e-07 | 427 |
somatic stem cell | 2.54e-07 | 433 |
stem cell | 5.19e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
vascular plexus | 1.43e-08 | 2 |
ventricle of nervous system | 1.43e-08 | 2 |
choroid plexus | 1.43e-08 | 2 |
brain ventricle | 1.43e-08 | 2 |
ventricular system of brain | 1.43e-08 | 2 |
ventricular system of central nervous system | 1.43e-08 | 2 |
skin of body | 1.48e-08 | 41 |
integument | 2.15e-07 | 46 |
integumental system | 2.15e-07 | 46 |
connective tissue | 9.93e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 5.10e-07 | 5 |
myotonic disease | 5.10e-07 | 5 |
muscle tissue disease | 5.10e-07 | 5 |
myopathy | 5.10e-07 | 5 |
muscular disease | 5.10e-07 | 5 |
myotonic dystrophy | 5.10e-07 | 5 |