FFCP PHASE1:Hg19::chr3:190252374..190252383,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:190252374..190252383,- | |||
|coexpression_cluster_id=C362 | |coexpression_cluster_id=C362 | ||
|description=CAGE_peak_at_chr3:190252374..190252383,- | |description=CAGE_peak_at_chr3:190252374..190252383,- | ||
|id=chr3:190252374..190252383,- | |id=chr3:190252374..190252383,- | ||
|ontology_enrichment_celltype=CL:0002621;2.75e-74;3!CL:0002328;1.07e-33;3!CL:0002076;4.42e-21;42!CL:0002368;7.21e-18;13!CL:0000317;1.14e-13;2!CL:1000448;1.14e-13;2!CL:0002308;1.14e-13;2!CL:0002140;1.14e-13;2!CL:0002202;5.83e-12;9!CL:0002632;5.83e-12;9!CL:0002251;7.40e-12;20!CL:0002166;1.47e-09;3!CL:0002159;5.00e-08;14 | |ontology_enrichment_celltype=CL:0002076!6.27e-24!43;CL:0000223!3.56e-19!59;CL:0002621!4.77e-19!3;CL:0002368!7.12e-16!13;CL:0000244!1.73e-13!4;CL:0000731!1.73e-13!4;CL:0002251!6.23e-13!21;CL:0000066!2.47e-12!254;CL:0002328!4.49e-09!3;CL:0002166!8.74e-09!3;CL:0002159!1.76e-07!13;CL:0000220!9.86e-07!246 | ||
| | |ontology_enrichment_celltype_v019=CL:0002621;2.75e-74;3!CL:0002328;1.07e-33;3!CL:0002076;4.42e-21;42!CL:0002368;7.21e-18;13!CL:0000317;1.14e-13;2!CL:1000448;1.14e-13;2!CL:0002308;1.14e-13;2!CL:0002140;1.14e-13;2!CL:0002202;5.83e-12;9!CL:0002632;5.83e-12;9!CL:0002251;7.40e-12;20!CL:0002166;1.47e-09;3!CL:0002159;5.00e-08;14 | ||
|ontology_enrichment_disease= | |ontology_enrichment_celltype_v019_2=CL:0002621,2.14e-74,3;CL:0002328,1.27e-33,3;CL:0002076,2.45e-21,42;CL:0002368,7.64e-18,13;CL:0000223,1.66e-15,58;CL:0000317,8.28e-14,2;CL:1000448,8.28e-14,2;CL:0002308,8.28e-14,2;CL:0002140,8.28e-14,2;CL:0002202,6.16e-12,9;CL:0002632,6.16e-12,9;CL:0002251,7.13e-12,20;CL:0002166,1.81e-09,3;CL:0002159,5.00e-08,14 | ||
|ontology_enrichment_uberon=UBERON:0001949;2.75e-74;3!UBERON:0004815;1.07e-33;3!UBERON:0002031;1.07e-33;3!UBERON:0003929;2.07e-32;7!UBERON:0003350;1.80e-28;8!UBERON:0001828;1.80e-28;8!UBERON:0004807;2.93e-28;22!UBERON:0002185;1.10e-20;5!UBERON:0000486;2.90e-19;12!UBERON:0003729;7.64e-18;13!UBERON:0005911;8.23e-16;36!UBERON:0000485;4.37e-15;7!UBERON:0002419;1.14e-13;2!UBERON:0007771;1.14e-13;2!UBERON:0003297;1.14e-13;2!UBERON:0001821;1.14e-13;2!UBERON:0003487;1.14e-13;2!UBERON:0001820;1.14e-13;2!UBERON:0010371;1.17e-13;31!UBERON:0000161;1.91e-12;19!UBERON:0000166;1.91e-12;19!UBERON:0000344;7.40e-12;20!UBERON:0000165;1.17e-08;28!UBERON:0001004;2.16e-08;65!UBERON:0007196;1.49e-07;15!UBERON:0001558;1.49e-07;15!UBERON:0001708;1.75e-07;4!UBERON:0008895;1.75e-07;4 | |ontology_enrichment_development_v019=CL:0000223;1.53e-08;58 | ||
|ontology_enrichment_disease=DOID:1749!2.78e-14!14;DOID:3151!5.14e-07!1;DOID:3149!5.14e-07!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001949!4.77e-19!3;UBERON:0000365!2.91e-18!5;UBERON:0005910!2.97e-15!6;UBERON:0003343!9.87e-14!4;UBERON:0004785!9.87e-14!4;UBERON:0000166!6.23e-13!21;UBERON:0000161!5.14e-12!35;UBERON:0001004!3.50e-11!72;UBERON:0003729!4.36e-11!5;UBERON:0000165!1.80e-09!28;UBERON:0000930!1.80e-09!28;UBERON:0004815!4.49e-09!3;UBERON:0002031!4.49e-09!3;UBERON:0004119!2.81e-08!169;UBERON:0000925!2.81e-08!169;UBERON:0006595!2.81e-08!169;UBERON:0000344!8.52e-08!12;UBERON:0001828!1.99e-07!8;UBERON:0002185!5.30e-07!4;UBERON:0000997!7.73e-07!1;UBERON:0005056!7.73e-07!1;UBERON:0001708!8.70e-07!4;UBERON:0001704!8.70e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;2.75e-74;3!UBERON:0004815;1.07e-33;3!UBERON:0002031;1.07e-33;3!UBERON:0003929;2.07e-32;7!UBERON:0003350;1.80e-28;8!UBERON:0001828;1.80e-28;8!UBERON:0004807;2.93e-28;22!UBERON:0002185;1.10e-20;5!UBERON:0000486;2.90e-19;12!UBERON:0003729;7.64e-18;13!UBERON:0005911;8.23e-16;36!UBERON:0000485;4.37e-15;7!UBERON:0002419;1.14e-13;2!UBERON:0007771;1.14e-13;2!UBERON:0003297;1.14e-13;2!UBERON:0001821;1.14e-13;2!UBERON:0003487;1.14e-13;2!UBERON:0001820;1.14e-13;2!UBERON:0010371;1.17e-13;31!UBERON:0000161;1.91e-12;19!UBERON:0000166;1.91e-12;19!UBERON:0000344;7.40e-12;20!UBERON:0000165;1.17e-08;28!UBERON:0001004;2.16e-08;65!UBERON:0007196;1.49e-07;15!UBERON:0001558;1.49e-07;15!UBERON:0001708;1.75e-07;4!UBERON:0008895;1.75e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,2.14e-74,3;UBERON:0004815,1.27e-33,3;UBERON:0002031,1.27e-33,3;UBERON:0003350,1.64e-28,8;UBERON:0001828,1.64e-28,8;UBERON:0004807,2.70e-22,28;UBERON:0002185,1.21e-20,5;UBERON:0003729,7.22e-18,13;UBERON:0002419,8.28e-14,2;UBERON:0007771,8.28e-14,2;UBERON:0003297,8.28e-14,2;UBERON:0001821,8.28e-14,2;UBERON:0003487,8.28e-14,2;UBERON:0001820,8.28e-14,2;UBERON:0005089,8.28e-14,2;UBERON:0005088,8.28e-14,2;UBERON:0001004,3.49e-12,74;UBERON:0000485,6.16e-12,9;UBERON:0000344,7.13e-12,20;UBERON:0000166,7.41e-11,22;UBERON:0000165,2.16e-08,29;UBERON:0000930,2.16e-08,29;UBERON:0005911,8.82e-08,82;UBERON:0007196,1.54e-07,15;UBERON:0001558,1.54e-07,15;UBERON:0000033,1.70e-07,56;UBERON:0001708,2.04e-07,4;UBERON:0008895,2.04e-07,4;UBERON:0000161,7.08e-07,36;UBERON:0000153,8.39e-07,62;UBERON:0007811,8.39e-07,62 | |||
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|short_description=p@chr3:190252374..190252383,- | |short_description=p@chr3:190252374..190252383,- | ||
}} | }} |
Latest revision as of 19:26, 29 July 2015
Short description: | p@chr3:190252374..190252383, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:190252374..190252383, - |
Coexpression cluster: | C362_Small_Mallassezderived_Urothelial_Gingival_Prostate_Keratinocyte_Tracheal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelial cell | 2.14e-74 | 3 |
bronchial epithelial cell | 1.27e-33 | 3 |
endo-epithelial cell | 2.45e-21 | 42 |
respiratory epithelial cell | 7.64e-18 | 13 |
endodermal cell | 1.66e-15 | 58 |
sebum secreting cell | 8.28e-14 | 2 |
epithelial cell of sweat gland | 8.28e-14 | 2 |
epithelial cell of skin gland | 8.28e-14 | 2 |
acinar cell of sebaceous gland | 8.28e-14 | 2 |
epithelial cell of tracheobronchial tree | 6.16e-12 | 9 |
epithelial cell of lower respiratory tract | 6.16e-12 | 9 |
epithelial cell of alimentary canal | 7.13e-12 | 20 |
epithelial cell of Malassez | 1.81e-09 | 3 |
general ecto-epithelial cell | 5.00e-08 | 14 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 2.14e-74 | 3 |
lower respiratory tract epithelium | 1.27e-33 | 3 |
epithelium of bronchus | 1.27e-33 | 3 |
epithelium of mucosa | 1.64e-28 | 8 |
gingiva | 1.64e-28 | 8 |
respiratory system epithelium | 2.70e-22 | 28 |
bronchus | 1.21e-20 | 5 |
mouth mucosa | 7.22e-18 | 13 |
skin gland | 8.28e-14 | 2 |
epidermis gland | 8.28e-14 | 2 |
gland of integumental system | 8.28e-14 | 2 |
sebaceous gland | 8.28e-14 | 2 |
skin sebaceous gland | 8.28e-14 | 2 |
sweat gland | 8.28e-14 | 2 |
sweat gland placode | 8.28e-14 | 2 |
sebaceous gland placode | 8.28e-14 | 2 |
respiratory system | 3.49e-12 | 74 |
simple columnar epithelium | 6.16e-12 | 9 |
mucosa | 7.13e-12 | 20 |
oral opening | 7.41e-11 | 22 |
mouth | 2.16e-08 | 29 |
stomodeum | 2.16e-08 | 29 |
endo-epithelium | 8.82e-08 | 82 |
tracheobronchial tree | 1.54e-07 | 15 |
lower respiratory tract | 1.54e-07 | 15 |
head | 1.70e-07 | 56 |
jaw skeleton | 2.04e-07 | 4 |
splanchnocranium | 2.04e-07 | 4 |
orifice | 7.08e-07 | 36 |
anterior region of body | 8.39e-07 | 62 |
craniocervical region | 8.39e-07 | 62 |