FFCP PHASE1:Hg19::chr13:113840599..113840624,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55795 | |EntrezGene=55795 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=25653 | |HGNC=25653 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-253bp_to_uc001vtb.2_5end | |association_with_transcript=-253bp_to_uc001vtb.2_5end | ||
|cluster_id=chr13:113840599..113840624,- | |||
|coexpression_cluster_id=C239 | |coexpression_cluster_id=C239 | ||
|description=CAGE_peak_5_at_PCID2_5end | |description=CAGE_peak_5_at_PCID2_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002087!3.42e-31!119;CL:0000738!1.01e-29!140;CL:0002031!2.00e-26!124;CL:0000791!7.21e-22!18;CL:0000789!7.21e-22!18;CL:0002420!7.21e-22!18;CL:0002419!7.21e-22!18;CL:0000790!7.21e-22!18;CL:0000037!3.97e-21!172;CL:0000566!3.97e-21!172;CL:0002032!6.95e-20!165;CL:0000837!6.95e-20!165;CL:0000988!7.71e-19!182;CL:0000084!9.56e-18!25;CL:0000827!9.56e-18!25;CL:0000838!1.17e-17!52;CL:0000542!3.85e-17!53;CL:0000051!3.85e-17!53;CL:0000625!1.01e-16!11;CL:0002057!1.12e-16!42;CL:0000860!5.19e-15!45;CL:0000766!3.12e-13!76;CL:0002194!9.28e-12!63;CL:0000576!9.28e-12!63;CL:0000040!9.28e-12!63;CL:0000559!9.28e-12!63;CL:0002009!3.87e-11!65;CL:0000839!1.21e-10!70;CL:0000557!2.25e-10!71;CL:0000624!1.95e-08!6 | |ontology_enrichment_celltype=CL:0002087!3.42e-31!119;CL:0000738!1.01e-29!140;CL:0002031!2.00e-26!124;CL:0000791!7.21e-22!18;CL:0000789!7.21e-22!18;CL:0002420!7.21e-22!18;CL:0002419!7.21e-22!18;CL:0000790!7.21e-22!18;CL:0000037!3.97e-21!172;CL:0000566!3.97e-21!172;CL:0002032!6.95e-20!165;CL:0000837!6.95e-20!165;CL:0000988!7.71e-19!182;CL:0000084!9.56e-18!25;CL:0000827!9.56e-18!25;CL:0000838!1.17e-17!52;CL:0000542!3.85e-17!53;CL:0000051!3.85e-17!53;CL:0000625!1.01e-16!11;CL:0002057!1.12e-16!42;CL:0000860!5.19e-15!45;CL:0000766!3.12e-13!76;CL:0002194!9.28e-12!63;CL:0000576!9.28e-12!63;CL:0000040!9.28e-12!63;CL:0000559!9.28e-12!63;CL:0002009!3.87e-11!65;CL:0000839!1.21e-10!70;CL:0000557!2.25e-10!71;CL:0000624!1.95e-08!6 | ||
|ontology_enrichment_celltype_v019=CL:0000625;9.96e-37;11!CL:0000791;2.08e-31;18!CL:0000789;2.08e-31;18!CL:0002419;2.08e-31;18!CL:0000084;6.94e-22;25!CL:0000623;1.89e-14;3!CL:0000767;6.18e-14;3!CL:0000226;1.19e-12;3!CL:0000842;1.19e-12;3!CL:0000094;6.85e-09;8!CL:0000542;1.44e-08;53!CL:0002087;3.35e-07;104 | |ontology_enrichment_celltype_v019=CL:0000625;9.96e-37;11!CL:0000791;2.08e-31;18!CL:0000789;2.08e-31;18!CL:0002419;2.08e-31;18!CL:0000084;6.94e-22;25!CL:0000623;1.89e-14;3!CL:0000767;6.18e-14;3!CL:0000226;1.19e-12;3!CL:0000842;1.19e-12;3!CL:0000094;6.85e-09;8!CL:0000542;1.44e-08;53!CL:0002087;3.35e-07;104 | ||
|ontology_enrichment_celltype_v019_2=CL:0000625,8.41e-37,11;CL:0000791,2.03e-31,18;CL:0000789,2.03e-31,18;CL:0002420,2.03e-31,18;CL:0002419,2.03e-31,18;CL:0000790,2.03e-31,18;CL:0000738,2.08e-22,136;CL:0000084,6.82e-22,25;CL:0000827,6.82e-22,25;CL:0002087,5.80e-20,115;CL:0000838,2.41e-17,52;CL:0000542,6.02e-17,53;CL:0000051,6.02e-17,53;CL:0000037,8.45e-17,168;CL:0000988,1.37e-15,177;CL:0000623,1.86e-14,3;CL:0000825,1.86e-14,3;CL:0002031,2.20e-14,120;CL:0000767,6.06e-14,3;CL:0002032,6.06e-14,161;CL:0000837,6.06e-14,161;CL:0000226,1.76e-12,3;CL:0000842,1.76e-12,3;CL:0000094,6.06e-09,8 | |||
|ontology_enrichment_development_v019=CL:0000790;2.08e-31;18!CL:0000051;1.44e-08;53 | |ontology_enrichment_development_v019=CL:0000790;2.08e-31;18!CL:0000051;1.44e-08;53 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.69e-14!102;UBERON:0003061!3.69e-14!102;UBERON:0002193!1.41e-12!112;UBERON:0002371!2.77e-08!80;UBERON:0001557!4.61e-08!19;UBERON:0002405!7.56e-08!115;UBERON:0001474!9.76e-08!86;UBERON:0004765!5.45e-07!101;UBERON:0001434!5.45e-07!101 | |ontology_enrichment_uberon=UBERON:0002390!3.69e-14!102;UBERON:0003061!3.69e-14!102;UBERON:0002193!1.41e-12!112;UBERON:0002371!2.77e-08!80;UBERON:0001557!4.61e-08!19;UBERON:0002405!7.56e-08!115;UBERON:0001474!9.76e-08!86;UBERON:0004765!5.45e-07!101;UBERON:0001434!5.45e-07!101 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.20e-09;15!UBERON:0000179;5.20e-09;15!UBERON:0000463;5.20e-09;15 | |ontology_enrichment_uberon_v019=UBERON:0000178;5.20e-09;15!UBERON:0000179;5.20e-09;15!UBERON:0000463;5.20e-09;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,6.64e-09,15;UBERON:0000179,6.64e-09,15;UBERON:0000463,6.64e-09,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0.0764134057479513,0,0,7.86728553697808,16.8884935162774,2.47705797305722,0,0,0,0,0.142169232487422,0,0,3.00816671205213,1.73608696572681,0.223915474239924,0.32389366601898,0.257575567634187,0,0.377875943688809,0,1.39457422143411,0.822335776043652,0.309706370895104,0.575384784644301,0.768482119587302,0.236482229888585,0.344745680736619,0.645484683583826,0,0,0.545812300115692,0.898893937780338,0.612167784741805,0.962787081228281,0.639337125799041,0.329851300186716,0.398927315243264,0,3.77272010217159,2.26954089876456,2.4912889959823,0,0,0.434377689410233,3.63239701580021,2.20966581592539,0.632924774881769,0,0,0,0,0,0,0,0,0.730656615058536,0,0.546138611262131,0,0,0,0.574752439954483,0,1.90810750907073,0.569212969109448,0.587237189370939,0.382273228125229,0,3.92355994087075,0,0.196709770113833,0.393010762749165,0.411202997999018,6.18590032945509,0.651844533267181,0,0,20.2767031531016,2.3568472597987,5.98141515375777,8.12411591295047,26.2587205437634,26.5321069022152,0.328875809207352,2.48715016007264,1.44901542867526,0,0,1.04535523804977,4.19244567980995,3.44898444241729,3.09264700934367,3.79529538029254,3.18565414324097,2.60433381542567,0.950452044448374,1.35517607169996,3.58362511232371,2.49861453104692,2.36777252044017,2.46338399076314,3.83052812126992,9.36040685242276,3.18613688542158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0.168584690078102,0.241011029883482,0.110293972732394,0.435758888184812,0,0.134831308160164,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414656231081544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.2307533315099,17.4658335636209,8.98401253958239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03384013061444,1.2942852049117,2.34800627167578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0,1.01489521846434,0,0,1.42939065274673,1.23408681925858,0.648473311192717,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0.276283915531148,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21787692703798,0,0.0769502585037971,0,0,0.0897576444097721,0,0.638002319463839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.707660516026713,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0.19871461170299,0,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0.525774708558629,0.279282401272254,0.687481272035051,0,0,0,0,0,0,0,0.0787831823072236,0,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0.988058159489721,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385239660814607,0.214441591374926,0.260994291965212,0,0,0.244736704506468,0,0.308801447160972,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0.19998739585493,0,0,0,0,0,0.622077260032973,0.127894371303652,0,0,0,0,0,0,0.558644917973244,0,0.0788617450012534,0,0,0,0,0,0.159633859057151,0,0,0,0.161475645631851,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157115589916002,0,0,0,0,0.0714765441766563,0.316027223465453,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540219106755613,1.74847648403166,0,0,0,0.196308467114945,0,0,0,0.0939839179798536,0.193373663920732,0.799529247399431,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0.462175628631418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193766729508018,0.248298857183432,0,0,0.202117188958219,0.217716747896961,0,0.336760265072938,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0.0764134057479513,0,0,7.86728553697808,16.8884935162774,2.47705797305722,0,0,0,0,0.142169232487422,0,0,3.00816671205213,1.73608696572681,0.223915474239924,0.32389366601898,0.257575567634187,0,0.377875943688809,0,1.39457422143411,0.822335776043652,0.309706370895104,0.575384784644301,0.768482119587302,0.236482229888585,0.344745680736619,0.645484683583826,0,0,0.545812300115692,0.898893937780338,0.612167784741805,0.962787081228281,0.639337125799041,0.329851300186716,0.398927315243264,0,3.77272010217159,2.26954089876456,2.4912889959823,0,0,0.434377689410233,3.63239701580021,2.20966581592539,0.632924774881769,0,0,0,0,0,0,0,0,0.730656615058536,0,0.546138611262131,0,0,0,0.574752439954483,0,1.90810750907073,0.569212969109448,0.587237189370939,0.382273228125229,0,3.92355994087075,0,0.196709770113833,0.393010762749165,0.411202997999018,6.18590032945509,0.651844533267181,0,0,20.2767031531016,2.3568472597987,5.98141515375777,8.12411591295047,26.2587205437634,26.5321069022152,0.328875809207352,2.48715016007264,1.44901542867526,0,0,1.04535523804977,4.19244567980995,3.44898444241729,3.09264700934367,3.79529538029254,3.18565414324097,2.60433381542567,0.950452044448374,1.35517607169996,3.58362511232371,2.49861453104692,2.36777252044017,2.46338399076314,3.83052812126992,9.36040685242276,3.18613688542158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0.168584690078102,0.241011029883482,0.110293972732394,0.435758888184812,0,0.134831308160164,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414656231081544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.2307533315099,17.4658335636209,8.98401253958239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03384013061444,1.2942852049117,2.34800627167578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0,1.01489521846434,0,0,1.42939065274673,1.23408681925858,0.648473311192717,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0.276283915531148,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21787692703798,0,0.0769502585037971,0,0,0.0897576444097721,0,0.638002319463839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.707660516026713,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0.19871461170299,0,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0.525774708558629,0.279282401272254,0.687481272035051,0,0,0,0,0,0,0,0.0787831823072236,0,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0.988058159489721,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385239660814607,0.214441591374926,0.260994291965212,0,0,0.244736704506468,0,0.308801447160972,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0.19998739585493,0,0,0,0,0,0.622077260032973,0.127894371303652,0,0,0,0,0,0,0.558644917973244,0,0.0788617450012534,0,0,0,0,0,0.159633859057151,0,0,0,0.161475645631851,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157115589916002,0,0,0,0,0.0714765441766563,0.316027223465453,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540219106755613,1.74847648403166,0,0,0,0.196308467114945,0,0,0,0.0939839179798536,0.193373663920732,0.799529247399431,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0.462175628631418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193766729508018,0.248298857183432,0,0,0.202117188958219,0.217716747896961,0,0.336760265072938,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p5@PCID2 | |short_description=p5@PCID2 | ||
}} | }} |
Latest revision as of 15:29, 16 September 2015
Short description: | p5@PCID2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PCID2_5end |
Coexpression cluster: | C239_CD4_lymphangiectasia_CD8_NK_mycosis_Renal_hairy |
Association with transcript: | -253bp_to_uc001vtb.2_5end |
EntrezGene: | PCID2 |
HGNC: | 25653 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD8-positive, alpha-beta T cell | 8.41e-37 | 11 |
mature alpha-beta T cell | 2.03e-31 | 18 |
alpha-beta T cell | 2.03e-31 | 18 |
immature T cell | 2.03e-31 | 18 |
mature T cell | 2.03e-31 | 18 |
immature alpha-beta T cell | 2.03e-31 | 18 |
leukocyte | 2.08e-22 | 136 |
T cell | 6.82e-22 | 25 |
pro-T cell | 6.82e-22 | 25 |
nongranular leukocyte | 5.80e-20 | 115 |
lymphoid lineage restricted progenitor cell | 2.41e-17 | 52 |
lymphocyte | 6.02e-17 | 53 |
common lymphoid progenitor | 6.02e-17 | 53 |
hematopoietic stem cell | 8.45e-17 | 168 |
hematopoietic cell | 1.37e-15 | 177 |
natural killer cell | 1.86e-14 | 3 |
pro-NK cell | 1.86e-14 | 3 |
hematopoietic lineage restricted progenitor cell | 2.20e-14 | 120 |
basophil | 6.06e-14 | 3 |
hematopoietic oligopotent progenitor cell | 6.06e-14 | 161 |
hematopoietic multipotent progenitor cell | 6.06e-14 | 161 |
single nucleate cell | 1.76e-12 | 3 |
mononuclear cell | 1.76e-12 | 3 |
granulocyte | 6.06e-09 | 8 |
Ontology term | p-value | n |
---|---|---|
blood | 6.64e-09 | 15 |
haemolymphatic fluid | 6.64e-09 | 15 |
organism substance | 6.64e-09 | 15 |