FFCP PHASE1:Hg19::chr2:20402266..20402279,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:20402266..20402279,- | |||
|coexpression_cluster_id=C1226 | |coexpression_cluster_id=C1226 | ||
|description=CAGE_peak_at_chr2:20402266..20402279,- | |description=CAGE_peak_at_chr2:20402266..20402279,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002076!8.67e-21!43;CL:0000223!1.13e-18!59;CL:0002368!5.81e-14!13;CL:0002623!5.57e-10!3;CL:0000066!5.32e-09!254;CL:0002202!3.49e-08!9;CL:0002632!3.49e-08!9;CL:0002251!7.20e-08!21 | |ontology_enrichment_celltype=CL:0002076!8.67e-21!43;CL:0000223!1.13e-18!59;CL:0002368!5.81e-14!13;CL:0002623!5.57e-10!3;CL:0000066!5.32e-09!254;CL:0002202!3.49e-08!9;CL:0002632!3.49e-08!9;CL:0002251!7.20e-08!21 | ||
|ontology_enrichment_celltype_v019=CL:0002231;7.79e-88;3!CL:0000307;3.66e-23;3!CL:0002076;1.01e-12;42!CL:0002202;1.16e-08;9!CL:0002632;1.16e-08;9 | |ontology_enrichment_celltype_v019=CL:0002231;7.79e-88;3!CL:0000307;3.66e-23;3!CL:0002076;1.01e-12;42!CL:0002202;1.16e-08;9!CL:0002632;1.16e-08;9 | ||
|ontology_enrichment_celltype_v019_2=CL:0002231,6.24e-88,3;CL:0000068,4.09e-23,3;CL:0000069,4.09e-23,3;CL:0000307,4.09e-23,3;CL:0000377,4.09e-23,3;CL:0002076,3.52e-15,42;CL:0000223,2.67e-11,58;CL:0002202,1.21e-08,9;CL:0002632,1.21e-08,9 | |||
|ontology_enrichment_development_v019=CL:0000377;3.66e-23;3!CL:0000223;3.64e-08;58 | |ontology_enrichment_development_v019=CL:0000377;3.66e-23;3!CL:0000223;3.64e-08;58 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!7.97e-17!169;UBERON:0000925!7.97e-17!169;UBERON:0006595!7.97e-17!169;UBERON:0001007!2.75e-13!155;UBERON:0001555!2.75e-13!155;UBERON:0007026!2.75e-13!155;UBERON:0001004!8.82e-13!72;UBERON:0000161!2.35e-11!35;UBERON:0000077!5.58e-10!130;UBERON:0004921!7.49e-10!129;UBERON:0004185!7.49e-10!129;UBERON:0000166!7.56e-08!21;UBERON:0001041!1.70e-07!98;UBERON:0007196!3.03e-07!14;UBERON:0001558!3.03e-07!14;UBERON:0000165!5.24e-07!28;UBERON:0000930!5.24e-07!28;UBERON:0000466!6.67e-07!126;UBERON:0005911!8.57e-07!82 | |ontology_enrichment_uberon=UBERON:0004119!7.97e-17!169;UBERON:0000925!7.97e-17!169;UBERON:0006595!7.97e-17!169;UBERON:0001007!2.75e-13!155;UBERON:0001555!2.75e-13!155;UBERON:0007026!2.75e-13!155;UBERON:0001004!8.82e-13!72;UBERON:0000161!2.35e-11!35;UBERON:0000077!5.58e-10!130;UBERON:0004921!7.49e-10!129;UBERON:0004185!7.49e-10!129;UBERON:0000166!7.56e-08!21;UBERON:0001041!1.70e-07!98;UBERON:0007196!3.03e-07!14;UBERON:0001558!3.03e-07!14;UBERON:0000165!5.24e-07!28;UBERON:0000930!5.24e-07!28;UBERON:0000466!6.67e-07!126;UBERON:0005911!8.57e-07!82 | ||
|ontology_enrichment_uberon_v019=UBERON:0002367;5.16e-25;11!UBERON:0010147;5.16e-25;11!UBERON:0003937;4.86e-23;12!UBERON:0005399;4.86e-23;12!UBERON:0003101;3.89e-13;22!UBERON:0000079;3.89e-13;22!UBERON:0000077;6.40e-11;27!UBERON:0003126;9.43e-11;7!UBERON:0001005;9.43e-11;7 | |ontology_enrichment_uberon_v019=UBERON:0002367;5.16e-25;11!UBERON:0010147;5.16e-25;11!UBERON:0003937;4.86e-23;12!UBERON:0005399;4.86e-23;12!UBERON:0003101;3.89e-13;22!UBERON:0000079;3.89e-13;22!UBERON:0000077;6.40e-11;27!UBERON:0003126;9.43e-11;7!UBERON:0001005;9.43e-11;7 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002367,4.86e-25,11;UBERON:0010147,4.86e-25,11;UBERON:0009846,4.86e-25,11;UBERON:0003353,4.86e-25,11;UBERON:0004902,4.86e-25,11;UBERON:0003820,4.86e-25,11;UBERON:0009847,4.86e-25,11;UBERON:0003937,4.59e-23,12;UBERON:0005399,4.59e-23,12;UBERON:0000162,5.89e-20,14;UBERON:0001353,5.89e-20,14;UBERON:0000163,5.89e-20,14;UBERON:0006866,5.89e-20,14;UBERON:0000164,5.89e-20,14;UBERON:0000931,5.89e-20,14;UBERON:0004122,1.04e-18,15;UBERON:0001046,4.91e-15,19;UBERON:0003101,3.77e-13,22;UBERON:0000079,3.77e-13,22;UBERON:0003126,9.89e-11,7;UBERON:0001005,9.89e-11,7;UBERON:0003064,1.40e-10,28;UBERON:0000077,2.96e-10,29;UBERON:0000161,1.78e-08,36;UBERON:0005153,2.82e-08,37;UBERON:0006554,9.72e-07,47;UBERON:0005157,9.72e-07,47 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,0,0,0,0.0787107813136792,0,0,0,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0.548751427043128,0,0,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503946384596579,0,0.268675568108545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0.248107807818777,0,0,0,0,0,0,0,0,0,0,0,0,1.80455823272956,8.47145098210246,0.114814448164607,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0.768760269460425,0,0.6069466851333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,1.08890984861323,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0.0874599999961957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.46112780877612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0,0,0.343972064943233,0,0,0,0.290967049465258,0,0,0,0.19871461170299,0,0,0.160317640503067,0,0,0,0.114536596165916,0,0,0,0.707082103850386,0.135904206073614,0.209205692624666,0,0,0,0,0,0,0.525774708558629,0,0,0,0,0,0,0,0,0,0.0787831823072236,0.0824158583811665,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0.315222829196793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293104467356165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428883182749851,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0.366857197043358,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0.620916591138472,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.62164849248911,0.17071847709395,0.691259661814092,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0.535661815816973,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0.202117188958219,0.217716747896961,0,0,0,0,0.0814032686109745,0.106727345877715,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,0,0,0,0.0787107813136792,0,0,0,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0.548751427043128,0,0,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503946384596579,0,0.268675568108545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0.248107807818777,0,0,0,0,0,0,0,0,0,0,0,0,1.80455823272956,8.47145098210246,0.114814448164607,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0.768760269460425,0,0.6069466851333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,1.08890984861323,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0.0874599999961957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.46112780877612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0,0,0.343972064943233,0,0,0,0.290967049465258,0,0,0,0.19871461170299,0,0,0.160317640503067,0,0,0,0.114536596165916,0,0,0,0.707082103850386,0.135904206073614,0.209205692624666,0,0,0,0,0,0,0.525774708558629,0,0,0,0,0,0,0,0,0,0.0787831823072236,0.0824158583811665,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0.315222829196793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293104467356165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428883182749851,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0.366857197043358,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0.620916591138472,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.62164849248911,0.17071847709395,0.691259661814092,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0.535661815816973,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0.202117188958219,0.217716747896961,0,0,0,0,0.0814032686109745,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr2:20402266..20402279,- | |short_description=p@chr2:20402266..20402279,- | ||
}} | }} |
Latest revision as of 05:12, 29 July 2015
Short description: | p@chr2:20402266..20402279, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:20402266..20402279, - |
Coexpression cluster: | C1226_Prostate_Mammary_giant_Small_tongue_nasal_Tracheal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of prostate | 6.24e-88 | 3 |
duct epithelial cell | 4.09e-23 | 3 |
branched duct epithelial cell | 4.09e-23 | 3 |
tracheal epithelial cell | 4.09e-23 | 3 |
tracheoblast | 4.09e-23 | 3 |
endo-epithelial cell | 3.52e-15 | 42 |
endodermal cell | 2.67e-11 | 58 |
epithelial cell of tracheobronchial tree | 1.21e-08 | 9 |
epithelial cell of lower respiratory tract | 1.21e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
prostate gland | 4.86e-25 | 11 |
male accessory sex gland | 4.86e-25 | 11 |
embryonic cloacal epithelium | 4.86e-25 | 11 |
epithelium of hindgut | 4.86e-25 | 11 |
urogenital sinus epithelium | 4.86e-25 | 11 |
prostate bud | 4.86e-25 | 11 |
prostate field | 4.86e-25 | 11 |
sex gland | 4.59e-23 | 12 |
male reproductive gland | 4.59e-23 | 12 |
cloaca | 5.89e-20 | 14 |
anal region | 5.89e-20 | 14 |
embryonic cloaca | 5.89e-20 | 14 |
terminal part of digestive tract | 5.89e-20 | 14 |
primitive urogenital sinus | 5.89e-20 | 14 |
proctodeum | 5.89e-20 | 14 |
genitourinary system | 1.04e-18 | 15 |
hindgut | 4.91e-15 | 19 |
male organism | 3.77e-13 | 22 |
male reproductive system | 3.77e-13 | 22 |
trachea | 9.89e-11 | 7 |
respiratory airway | 9.89e-11 | 7 |
intermediate mesoderm | 1.40e-10 | 28 |
mixed endoderm/mesoderm-derived structure | 2.96e-10 | 29 |
orifice | 1.78e-08 | 36 |
epithelial bud | 2.82e-08 | 37 |
urinary system structure | 9.72e-07 | 47 |
epithelial fold | 9.72e-07 | 47 |