FFCP PHASE1:Hg19::chr1:185703364..185703371,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:185703364..185703371,- | |||
|coexpression_cluster_id=C152 | |coexpression_cluster_id=C152 | ||
|description=CAGE_peak_at_chr1:185703364..185703371,- | |description=CAGE_peak_at_chr1:185703364..185703371,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002591;5.12e-50;1!CL:0000333;2.94e-11;5 | |ontology_enrichment_celltype_v019=CL:0002591;5.12e-50;1!CL:0000333;2.94e-11;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0002591,6.58e-50,1 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:171!3.85e-11!10;DOID:3095!8.78e-07!22;DOID:2994!8.78e-07!22 | |ontology_enrichment_disease=DOID:171!3.85e-11!10;DOID:3095!8.78e-07!22;DOID:2994!8.78e-07!22 | ||
|ontology_enrichment_disease_v019=DOID:171;4.50e-45;10!DOID:3095;4.13e-21;22!DOID:2994;4.13e-21;22!DOID:169;1.32e-09;6 | |ontology_enrichment_disease_v019=DOID:171;4.50e-45;10!DOID:3095;4.13e-21;22!DOID:2994;4.13e-21;22!DOID:169;1.32e-09;6 | ||
|ontology_enrichment_disease_v019_2=DOID:171,4.18e-45,10;DOID:3095,3.99e-21,22;DOID:2994,3.99e-21,22;DOID:169,1.32e-09,6 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0002346;4.53e-50;4!UBERON:0000923;4.53e-50;4!UBERON:0010316;4.53e-50;4!UBERON:0005291;4.53e-50;4!UBERON:0002050;2.45e-40;5!UBERON:0005423;2.45e-40;5!UBERON:0000078;8.10e-26;2!UBERON:0002012;8.10e-26;2!UBERON:0008886;8.10e-26;2!UBERON:0000013;2.94e-11;5!UBERON:0002410;2.94e-11;5!UBERON:0000010;7.91e-07;8 | |ontology_enrichment_uberon_v019=UBERON:0002346;4.53e-50;4!UBERON:0000923;4.53e-50;4!UBERON:0010316;4.53e-50;4!UBERON:0005291;4.53e-50;4!UBERON:0002050;2.45e-40;5!UBERON:0005423;2.45e-40;5!UBERON:0000078;8.10e-26;2!UBERON:0002012;8.10e-26;2!UBERON:0008886;8.10e-26;2!UBERON:0000013;2.94e-11;5!UBERON:0002410;2.94e-11;5!UBERON:0000010;7.91e-07;8 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000078,9.18e-26,2;UBERON:0007497,9.18e-26,2;UBERON:0003643,9.18e-26,2;UBERON:0003504,9.18e-26,2;UBERON:0003469,9.18e-26,2;UBERON:0003496,9.18e-26,2;UBERON:0002012,9.18e-26,2;UBERON:0008886,9.18e-26,2;UBERON:0007303,9.18e-26,2;UBERON:0002061,9.18e-26,2;UBERON:0005432,9.18e-26,2;UBERON:0004363,9.18e-26,2;UBERON:0004145,1.12e-17,3;UBERON:0000013,2.94e-11,5;UBERON:0002410,2.94e-11,5;UBERON:0003498,3.60e-11,5;UBERON:0005985,3.60e-11,5;UBERON:0010188,1.57e-09,6;UBERON:0002539,1.57e-09,6;UBERON:0003351,1.57e-09,6;UBERON:0008816,1.57e-09,6;UBERON:0000010,7.91e-07,8;UBERON:0000485,8.85e-07,9 | |||
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| ||
|short_description=p@chr1:185703364..185703371,- | |short_description=p@chr1:185703364..185703371,- | ||
}} | }} |
Latest revision as of 01:28, 28 July 2015
Short description: | p@chr1:185703364..185703371, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:185703364..185703371, - |
Coexpression cluster: | C152_peripheral_neuroectodermal_neuroepithelioma_neuroblastoma_testicular_carcinoid_lung |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the pulmonary artery | 6.58e-50 | 1 |
Ontology term | p-value | n |
---|---|---|
mixed ectoderm/mesoderm/endoderm-derived structure | 9.18e-26 | 2 |
developing epithelial placode | 9.18e-26 | 2 |
respiratory system arterial blood vessel | 9.18e-26 | 2 |
respiratory system blood vessel | 9.18e-26 | 2 |
respiratory system artery | 9.18e-26 | 2 |
head blood vessel | 9.18e-26 | 2 |
pulmonary artery | 9.18e-26 | 2 |
pulmonary vascular system | 9.18e-26 | 2 |
pharyngeal vasculature | 9.18e-26 | 2 |
truncus arteriosus | 9.18e-26 | 2 |
aortic sac | 9.18e-26 | 2 |
pharyngeal arch artery | 9.18e-26 | 2 |
outflow tract | 1.12e-17 | 3 |
sympathetic nervous system | 2.94e-11 | 5 |
autonomic nervous system | 2.94e-11 | 5 |
heart blood vessel | 3.60e-11 | 5 |
coronary vessel | 3.60e-11 | 5 |
protuberance | 1.57e-09 | 6 |
pharyngeal arch | 1.57e-09 | 6 |
pharyngeal epithelium | 1.57e-09 | 6 |
embryonic head | 1.57e-09 | 6 |
peripheral nervous system | 7.91e-07 | 8 |
simple columnar epithelium | 8.85e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 4.18e-45 | 10 |
germ cell and embryonal cancer | 3.99e-21 | 22 |
germ cell cancer | 3.99e-21 | 22 |
neuroendocrine tumor | 1.32e-09 | 6 |