FFCP PHASE1:Hg19::chr3:112318598..112318609,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:112318598..112318609,- | |||
|coexpression_cluster_id=C333 | |coexpression_cluster_id=C333 | ||
|description=CAGE_peak_at_chr3:112318598..112318609,- | |description=CAGE_peak_at_chr3:112318598..112318609,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000057!8.73e-15!75;CL:0002620!2.26e-13!23;CL:0002579!3.00e-09!3;CL:0000135!4.97e-09!3;CL:0000386!4.97e-09!3;CL:0000388!4.97e-09!3;CL:0000055!1.63e-08!180;CL:0000136!1.00e-07!15;CL:0002334!2.87e-07!12 | |ontology_enrichment_celltype=CL:0000057!8.73e-15!75;CL:0002620!2.26e-13!23;CL:0002579!3.00e-09!3;CL:0000135!4.97e-09!3;CL:0000386!4.97e-09!3;CL:0000388!4.97e-09!3;CL:0000055!1.63e-08!180;CL:0000136!1.00e-07!15;CL:0002334!2.87e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0002579;1.51e-21;3!CL:0000135;2.95e-21;3!CL:0000388;2.95e-21;3!CL:0000511;1.41e-16;1!CL:0002625;1.41e-16;1!CL:0000216;1.41e-16;1!CL:0002591;1.41e-16;1!CL:0002616;1.41e-16;1!CL:0000136;3.56e-11;13!CL:0002617;5.93e-09;2 | |ontology_enrichment_celltype_v019=CL:0002579;1.51e-21;3!CL:0000135;2.95e-21;3!CL:0000388;2.95e-21;3!CL:0000511;1.41e-16;1!CL:0002625;1.41e-16;1!CL:0000216;1.41e-16;1!CL:0002591;1.41e-16;1!CL:0002616;1.41e-16;1!CL:0000136;3.56e-11;13!CL:0002617;5.93e-09;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0002579,1.29e-21,3;CL:0000135,3.28e-21,3;CL:0000388,3.28e-21,3;CL:0002616,7.57e-17,1;CL:0000511,1.04e-16,1;CL:0002625,1.04e-16,1;CL:0000216,1.04e-16,1;CL:0002591,3.07e-16,1;CL:0000136,9.47e-10,15;CL:0002617,6.94e-09,2;CL:0000057,4.60e-07,76 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:17!1.26e-12!5;DOID:450!1.26e-12!5;DOID:66!1.26e-12!5;DOID:423!1.26e-12!5;DOID:0080000!1.26e-12!5;DOID:11722!1.26e-12!5 | |ontology_enrichment_disease=DOID:17!1.26e-12!5;DOID:450!1.26e-12!5;DOID:66!1.26e-12!5;DOID:423!1.26e-12!5;DOID:0080000!1.26e-12!5;DOID:11722!1.26e-12!5 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003688!9.31e-12!6;UBERON:0002358!9.31e-12!6;UBERON:0003684!9.31e-12!6;UBERON:0001178!9.31e-12!6;UBERON:0000043!4.97e-09!3;UBERON:0004457!7.03e-08!12;UBERON:0000042!7.03e-08!12;UBERON:0004923!9.90e-07!57 | |ontology_enrichment_uberon=UBERON:0003688!9.31e-12!6;UBERON:0002358!9.31e-12!6;UBERON:0003684!9.31e-12!6;UBERON:0001178!9.31e-12!6;UBERON:0000043!4.97e-09!3;UBERON:0004457!7.03e-08!12;UBERON:0000042!7.03e-08!12;UBERON:0004923!9.90e-07!57 | ||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.19e-23;6!UBERON:0002358;1.19e-23;6!UBERON:0003684;1.19e-23;6!UBERON:0001178;1.19e-23;6!UBERON:0007846;2.95e-21;3!UBERON:0000043;2.95e-21;3!UBERON:0007845;2.95e-21;3!UBERON:0001136;1.41e-16;1!UBERON:0001343;1.41e-16;1!UBERON:0004910;1.41e-16;1!UBERON:0004813;1.41e-16;1!UBERON:0004457;5.29e-16;9!UBERON:0000042;5.29e-16;9!UBERON:0000078;5.93e-09;2!UBERON:0004909;5.93e-09;2!UBERON:0002012;5.93e-09;2!UBERON:0005406;5.93e-09;2!UBERON:0008886;5.93e-09;2 | |ontology_enrichment_uberon_v019=UBERON:0003688;1.19e-23;6!UBERON:0002358;1.19e-23;6!UBERON:0003684;1.19e-23;6!UBERON:0001178;1.19e-23;6!UBERON:0007846;2.95e-21;3!UBERON:0000043;2.95e-21;3!UBERON:0007845;2.95e-21;3!UBERON:0001136;1.41e-16;1!UBERON:0001343;1.41e-16;1!UBERON:0004910;1.41e-16;1!UBERON:0004813;1.41e-16;1!UBERON:0004457;5.29e-16;9!UBERON:0000042;5.29e-16;9!UBERON:0000078;5.93e-09;2!UBERON:0004909;5.93e-09;2!UBERON:0002012;5.93e-09;2!UBERON:0005406;5.93e-09;2!UBERON:0008886;5.93e-09;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.34e-23,6;UBERON:0002358,1.34e-23,6;UBERON:0003684,1.34e-23,6;UBERON:0001178,1.34e-23,6;UBERON:0007846,3.28e-21,3;UBERON:0000043,3.28e-21,3;UBERON:0007845,3.28e-21,3;UBERON:0001136,1.04e-16,1;UBERON:0001343,1.04e-16,1;UBERON:0004910,1.04e-16,1;UBERON:0005154,1.04e-16,1;UBERON:0005295,1.04e-16,1;UBERON:0004813,1.04e-16,1;UBERON:0005297,1.04e-16,1;UBERON:0005294,1.04e-16,1;UBERON:0010141,1.04e-16,1;UBERON:0005891,1.04e-16,1;UBERON:0004457,3.88e-12,12;UBERON:0000042,3.88e-12,12;UBERON:0005406,4.34e-09,2;UBERON:0004909,5.08e-09,2;UBERON:0000078,8.74e-09,2;UBERON:0007497,8.74e-09,2;UBERON:0003643,8.74e-09,2;UBERON:0003504,8.74e-09,2;UBERON:0003469,8.74e-09,2;UBERON:0003496,8.74e-09,2;UBERON:0002012,8.74e-09,2;UBERON:0008886,8.74e-09,2;UBERON:0007303,8.74e-09,2;UBERON:0002061,8.74e-09,2;UBERON:0005432,8.74e-09,2;UBERON:0004363,8.74e-09,2 | |||
|phase1_expression=0.181678379270557,1.2846031433459,1.26858963686374,0,0.893922188854576,1.74467704820074,0,0,0.261185628199839,0,0,0,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.434539556882471,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.506522046658319,0,2.29469296599051,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358779271377724,0.640672166455702,0.211931901159562,0.300091096084402,0.309157587715317,0.257640540045629,0.37223371266318,0,0.194874010322397,0.757301322732344,0.276149695926898,0,1.77504796258307,0.503760491138201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.356857977594324,0,0.117141414992713,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0.30239029332968,0.992431231275107,0.153461973288062,0,1.53766979106841,0.511707249066704,2.57366273829772,0,0,0,0,0,0.116210378459959,0,0,0,0.114814448164607,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0.178064071293475,0,0,0,0,0,1.25924938732256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,1.13008116620243,0,0,0,0,0,0.202910376962704,0,0,0,0.0982490410131212,0,0,0,0.987884678879706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0.171986032471617,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.62899880526114,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.467426619694449,0,0,0.251567901752575,0,0,0.756154618816195,0.15543720058278,0,0,0,0,0,0.53168342911599,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358177682162975,0,0.438568099157414,0.176689145945881,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705351887381368,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48798007266701,1.38652688589425,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.435433495793923,0,0,0,0,0,0.106727345877715,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0.181678379270557,1.2846031433459,1.26858963686374,0,0.893922188854576,1.74467704820074,0,0,0.261185628199839,0,0,0,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.434539556882471,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.506522046658319,0,2.29469296599051,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358779271377724,0.640672166455702,0.211931901159562,0.300091096084402,0.309157587715317,0.257640540045629,0.37223371266318,0,0.194874010322397,0.757301322732344,0.276149695926898,0,1.77504796258307,0.503760491138201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.356857977594324,0,0.117141414992713,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0.30239029332968,0.992431231275107,0.153461973288062,0,1.53766979106841,0.511707249066704,2.57366273829772,0,0,0,0,0,0.116210378459959,0,0,0,0.114814448164607,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0.178064071293475,0,0,0,0,0,1.25924938732256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,1.13008116620243,0,0,0,0,0,0.202910376962704,0,0,0,0.0982490410131212,0,0,0,0.987884678879706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0.171986032471617,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.62899880526114,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.467426619694449,0,0,0.251567901752575,0,0,0.756154618816195,0.15543720058278,0,0,0,0,0,0.53168342911599,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358177682162975,0,0.438568099157414,0.176689145945881,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705351887381368,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48798007266701,1.38652688589425,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.435433495793923,0,0,0,0,0,0.106727345877715,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p@chr3:112318598..112318609,- | |short_description=p@chr3:112318598..112318609,- | ||
}} | }} |
Latest revision as of 14:17, 29 July 2015
Short description: | p@chr3:112318598..112318609, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:112318598..112318609, - |
Coexpression cluster: | C333_Fibroblast_Smooth_Preadipocyte_Adipocyte_Ewing_Placental_sacrococcigeal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
omentum preadipocyte | 1.29e-21 | 3 |
fibrocyte | 3.28e-21 | 3 |
tendon cell | 3.28e-21 | 3 |
perirenal adipocyte cell | 7.57e-17 | 1 |
androgen binding protein secreting cell | 1.04e-16 | 1 |
seminiferous tubule epithelial cell | 1.04e-16 | 1 |
Sertoli cell | 1.04e-16 | 1 |
smooth muscle cell of the pulmonary artery | 3.07e-16 | 1 |
fat cell | 9.47e-10 | 15 |
adipocyte of breast | 6.94e-09 | 2 |
fibroblast | 4.60e-07 | 76 |