FFCP PHASE1:Hg19::chr8:128902457..128902473,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5820 | |EntrezGene=5820 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=9709 | |HGNC=9709 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-361bp_to_uc003ysl.2_5end | |association_with_transcript=-361bp_to_uc003ysl.2_5end | ||
|cluster_id=chr8:128902457..128902473,+ | |||
|coexpression_cluster_id=C64 | |coexpression_cluster_id=C64 | ||
|description=CAGE_peak_19_at_PVT1_5end | |description=CAGE_peak_19_at_PVT1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002274!6.05e-20!5;CL:0000457!6.05e-20!5;CL:0002191!6.05e-20!5;CL:0000097!6.05e-20!5;CL:0000831!6.05e-20!5;CL:0002028!6.05e-20!5;CL:0000163!6.64e-11!9 | |ontology_enrichment_celltype=CL:0002274!6.05e-20!5;CL:0000457!6.05e-20!5;CL:0002191!6.05e-20!5;CL:0000097!6.05e-20!5;CL:0000831!6.05e-20!5;CL:0002028!6.05e-20!5;CL:0000163!6.64e-11!9 | ||
|ontology_enrichment_celltype_v019=CL:0000097;3.95e-90;5!CL:0000163;1.81e-50;9!CL:0000151;2.48e-11;36 | |ontology_enrichment_celltype_v019=CL:0000097;3.95e-90;5!CL:0000163;1.81e-50;9!CL:0000151;2.48e-11;36 | ||
|ontology_enrichment_celltype_v019_2=CL:0000097,1.77e-90,5;CL:0002028,1.77e-90,5;CL:0000163,1.16e-50,9;CL:0000151,3.75e-13,36;CL:0000839,2.82e-07,66;CL:0000557,3.56e-07,67;CL:0000763,7.91e-07,108;CL:0000049,7.91e-07,108 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:4960;2.05e-29;1!DOID:0070004;2.05e-29;1 | |ontology_enrichment_disease_v019=DOID:4960;2.05e-29;1!DOID:0070004;2.05e-29;1 | ||
|ontology_enrichment_disease_v019_2=DOID:4960,3.16e-29,1;DOID:0070004,3.16e-29,1 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0007195;2.05e-29;1!UBERON:0002371;2.03e-10;12!UBERON:0001474;2.95e-07;18 | |ontology_enrichment_uberon_v019=UBERON:0007195;2.05e-29;1!UBERON:0002371;2.03e-10;12!UBERON:0001474;2.95e-07;18 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007195,4.20e-29,1;UBERON:0002371,1.78e-13,76;UBERON:0001474,1.61e-12,82;UBERON:0004765,1.94e-11,90;UBERON:0002405,4.42e-11,93;UBERON:0002390,1.56e-10,98;UBERON:0003061,1.56e-10,98;UBERON:0001434,2.51e-10,100;UBERON:0002193,1.39e-09,108 | |||
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| ||
|short_description=p19@PVT1 | |short_description=p19@PVT1 | ||
}} | }} |
Latest revision as of 07:13, 16 September 2015
Short description: | p19@PVT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_PVT1_5end |
Coexpression cluster: | C64_Mast_chronic_acute_immature_chorionic_Basophils_Dendritic |
Association with transcript: | -361bp_to_uc003ysl.2_5end |
EntrezGene: | PVT1 |
HGNC: | 9709 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 1.77e-90 | 5 |
basophil mast progenitor cell | 1.77e-90 | 5 |
endocrine cell | 1.16e-50 | 9 |
secretory cell | 3.75e-13 | 36 |
myeloid lineage restricted progenitor cell | 2.82e-07 | 66 |
granulocyte monocyte progenitor cell | 3.56e-07 | 67 |
myeloid cell | 7.91e-07 | 108 |
common myeloid progenitor | 7.91e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
stroma of bone marrow | 4.20e-29 | 1 |
bone marrow | 1.78e-13 | 76 |
bone element | 1.61e-12 | 82 |
skeletal element | 1.94e-11 | 90 |
immune system | 4.42e-11 | 93 |
hematopoietic system | 1.56e-10 | 98 |
blood island | 1.56e-10 | 98 |
skeletal system | 2.51e-10 | 100 |
hemolymphoid system | 1.39e-09 | 108 |
Ontology term | p-value | n |
---|---|---|
bone marrow cancer | 3.16e-29 | 1 |
myeloma | 3.16e-29 | 1 |