FFCP PHASE1:Hg19::chr2:55214714..55214763,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57142 | |EntrezGene=57142 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14085 | |HGNC=14085 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=5bp_to_ENST00000486085_5end | |association_with_transcript=5bp_to_ENST00000486085_5end | ||
|cluster_id=chr2:55214714..55214763,- | |||
|description=CAGE_peak_11_at_RTN4_5end | |description=CAGE_peak_11_at_RTN4_5end | ||
|id=chr2:55214714..55214763,- | |id=chr2:55214714..55214763,- | ||
|ontology_enrichment_celltype=CL:0000055!5.66e-15!180;CL:0000057!4.75e-09!75;CL:0000192!6.72e-09!42;CL:0000514!6.72e-09!42;CL:0000222!1.04e-08!119;CL:0000680!1.23e-08!57;CL:0000056!1.23e-08!57;CL:0000355!1.23e-08!57;CL:0000393!2.48e-08!60;CL:0000211!2.48e-08!60;CL:0000183!6.78e-08!59;CL:0000187!1.35e-07!54 | |ontology_enrichment_celltype=CL:0000055!5.66e-15!180;CL:0000057!4.75e-09!75;CL:0000192!6.72e-09!42;CL:0000514!6.72e-09!42;CL:0000222!1.04e-08!119;CL:0000680!1.23e-08!57;CL:0000056!1.23e-08!57;CL:0000355!1.23e-08!57;CL:0000393!2.48e-08!60;CL:0000211!2.48e-08!60;CL:0000183!6.78e-08!59;CL:0000187!1.35e-07!54 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2=CL:0000192,6.08e-09,43;CL:0000514,6.08e-09,43;CL:0000057,6.27e-09,76;CL:0000222,1.04e-08,121;CL:0000680,1.24e-08,58;CL:0000056,1.24e-08,58;CL:0000355,1.24e-08,58;CL:0000393,6.24e-08,61;CL:0000211,6.24e-08,61;CL:0000048,1.01e-07,427;CL:0000187,1.82e-07,55;CL:0000723,2.14e-07,433 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!9.38e-12!83;UBERON:0002329!9.38e-12!83;UBERON:0003077!9.38e-12!83;UBERON:0003059!9.38e-12!83;UBERON:0007282!9.38e-12!83;UBERON:0009618!9.38e-12!83;UBERON:0007285!9.38e-12!83;UBERON:0004290!2.41e-10!70;UBERON:0000486!1.10e-09!82;UBERON:0000468!1.34e-09!659;UBERON:0005256!7.74e-09!143;UBERON:0001134!2.46e-08!61;UBERON:0002036!2.46e-08!61;UBERON:0003082!2.46e-08!61;UBERON:0000467!3.20e-08!625;UBERON:0000480!4.70e-08!626;UBERON:0000475!4.88e-08!365;UBERON:0002385!5.78e-08!63;UBERON:0001015!5.78e-08!63;UBERON:0000383!5.78e-08!63;UBERON:0002204!1.25e-07!167;UBERON:0001637!3.46e-07!42;UBERON:0003509!3.46e-07!42;UBERON:0004572!3.46e-07!42;UBERON:0002100!6.15e-07!216;UBERON:0002049!6.65e-07!79;UBERON:0007798!6.65e-07!79 | |ontology_enrichment_uberon=UBERON:0000914!9.38e-12!83;UBERON:0002329!9.38e-12!83;UBERON:0003077!9.38e-12!83;UBERON:0003059!9.38e-12!83;UBERON:0007282!9.38e-12!83;UBERON:0009618!9.38e-12!83;UBERON:0007285!9.38e-12!83;UBERON:0004290!2.41e-10!70;UBERON:0000486!1.10e-09!82;UBERON:0000468!1.34e-09!659;UBERON:0005256!7.74e-09!143;UBERON:0001134!2.46e-08!61;UBERON:0002036!2.46e-08!61;UBERON:0003082!2.46e-08!61;UBERON:0000467!3.20e-08!625;UBERON:0000480!4.70e-08!626;UBERON:0000475!4.88e-08!365;UBERON:0002385!5.78e-08!63;UBERON:0001015!5.78e-08!63;UBERON:0000383!5.78e-08!63;UBERON:0002204!1.25e-07!167;UBERON:0001637!3.46e-07!42;UBERON:0003509!3.46e-07!42;UBERON:0004572!3.46e-07!42;UBERON:0002100!6.15e-07!216;UBERON:0002049!6.65e-07!79;UBERON:0007798!6.65e-07!79 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,2.61e-11,73;UBERON:0007503,6.86e-11,78;UBERON:0003077,9.09e-11,72;UBERON:0007285,9.09e-11,72;UBERON:0002329,1.97e-10,71;UBERON:0003059,1.97e-10,71;UBERON:0007282,1.97e-10,71;UBERON:0004290,1.97e-10,71;UBERON:0009618,1.97e-10,71;UBERON:0000486,2.58e-10,83;UBERON:0003104,2.21e-08,160;UBERON:0009142,2.21e-08,160;UBERON:0001134,3.85e-08,62;UBERON:0002036,3.85e-08,62;UBERON:0003082,3.85e-08,62;UBERON:0005256,6.86e-08,122;UBERON:0002385,7.08e-08,64;UBERON:0001015,7.08e-08,64;UBERON:0000383,7.08e-08,64;UBERON:0002204,2.18e-07,167 | |||
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| ||
|short_description=p11@RTN4 | |short_description=p11@RTN4 | ||
}} | }} |
Latest revision as of 16:36, 17 September 2015
Short description: | p11@RTN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_RTN4_5end |
Coexpression cluster: | NA |
Association with transcript: | 5bp_to_ENST00000486085_5end |
EntrezGene: | RTN4 |
HGNC: | 14085 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 6.08e-09 | 43 |
smooth muscle myoblast | 6.08e-09 | 43 |
fibroblast | 6.27e-09 | 76 |
mesodermal cell | 1.04e-08 | 121 |
muscle precursor cell | 1.24e-08 | 58 |
myoblast | 1.24e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.24e-08 | 58 |
electrically responsive cell | 6.24e-08 | 61 |
electrically active cell | 6.24e-08 | 61 |
multi fate stem cell | 1.01e-07 | 427 |
muscle cell | 1.82e-07 | 55 |
somatic stem cell | 2.14e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 2.61e-11 | 73 |
epithelial vesicle | 6.86e-11 | 78 |
paraxial mesoderm | 9.09e-11 | 72 |
presumptive paraxial mesoderm | 9.09e-11 | 72 |
somite | 1.97e-10 | 71 |
presomitic mesoderm | 1.97e-10 | 71 |
presumptive segmental plate | 1.97e-10 | 71 |
dermomyotome | 1.97e-10 | 71 |
trunk paraxial mesoderm | 1.97e-10 | 71 |
multilaminar epithelium | 2.58e-10 | 83 |
mesenchyme | 2.21e-08 | 160 |
entire embryonic mesenchyme | 2.21e-08 | 160 |
skeletal muscle tissue | 3.85e-08 | 62 |
striated muscle tissue | 3.85e-08 | 62 |
myotome | 3.85e-08 | 62 |
trunk mesenchyme | 6.86e-08 | 122 |
muscle tissue | 7.08e-08 | 64 |
musculature | 7.08e-08 | 64 |
musculature of body | 7.08e-08 | 64 |
musculoskeletal system | 2.18e-07 | 167 |