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MacroAPE 1083:18-GAAGTGGGTGG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;29.9;32.89;500.526;34.684!2;491.556;35.282;49.036;22.126!3;507.702;29.9;23.322;37.076!4;22.126;34.086;493.948;47.84!5;31.694;20.332;42.458;5...")
 
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4385!13231-141I9;0.971068!10696-109G3;0.806159!10493-107B7;0.74586!10494-107B8;0.509621!10850-111F4;0.964217!10851-111F5;0.0536227!10852-111F6;0.902199!10853-111F7;0.810217!10854-111F8;0.509727!10855-111F9;0.77648!10856-111G1;0.659472!10847-111F1;0.369408!10846-111E9;0.573777!10848-111F2;0.822736!10845-111E8;0.817268!10857-111G2;0.536756!10858-111G3;0.269748!10156-103A3;0.0674248!11901-125F2;0.470891!11902-125F3;0.721616!11903-125F4;0.429879!10689-109F5;0.741721!10648-109A9;0.081098!10784-110H1;0.770792!10744-110C6;0.604995!10772-110F7;0.226246!10474-106I6;0.929903!10600-108E6;0.991791!10684-109E9;0.953635!12226-129F3;0.882629!12227-129F4;0.520429!10508-107D4;0.0637837!10539-107G8;0.168419!10607-108F4;0.558951!10555-107I6;0.0843743!10774-110F9;0.328146!10637-108I7;0.365007!10663-109C6;0.38602!10728-110A8;0.58066!10729-110A9;0.45883!10430-106D7;0.868176!10730-110B1;0.625577!10813-111B3;0.117694!10812-111B2;0.644483!10037-101F1;0.929251!10172-103C1;0.458287!10163-103B1;0.406748!10076-102A4;0.463829!10073-102A1;0.260989!10036-101E9;0.264356!10195-103E6;0.267198!10277-104E7;0.354033!10434-106E2;0.745122!10550-107I1;0.0940128!10545-107H5;0.557984!10544-107H4;0.827123!10704-109H2;0.735201!10510-107D6;0.233703!10558-107I9;0.743522!10020-101D2;0.733856!10732-110B3;0.687123!10049-101G4;0.247184!10698-109G5;0.0357984!10437-106E5;0.973969!10417-106C3;0.882725!10035-101E8;0.589079!10171-103B9;0.439889!10157-103A4;0.385578!10034-101E7;0.439509!10072-101I9;0.416087!10199-103F1;0.249916!10200-103F2;0.525741!10697-109G4;0.458503!10723-110A3;0.303365!10179-103C8;0.765678!10160-103A7;0.0972632!10180-103C9;0.196472!10162-103A9;0.378153!10021-101D3;0.466021!10840-111E3;0.791978!10706-109H4;0.987903!10033-101E6;0.184764!10032-101E5;0.508699!10490-107B4;0.272945!10439-106E7;0.534694!10022-101D4;0.436045!10176-103C5;0.619642!10469-106I1;0.377762!10067-101I4;0.950306!10411-106B6;0.149366!10471-106I3;0.172397!10030-101E3;0.504025!10475-106I7;0.190586!10787-110H4;0.2772!10477-106I9;0.417696!10695-109G2;0.0599214!11771-123I7;0.390511!11772-123I8;0.82464!11773-123I9;0.562273!10093-102C3;0.988385!10442-106F1;0.287004!10442-106F1;0.808453!10201-103F3;0.86842!10639-108I9;0.214666!11843-124H7;0.387016!11841-124H5;0.523794!10693-109F9;0.713742!10436-106E4;0.466875!10483-107A6;0.880428!10282-104F3;0.953809!10023-101D5;0.031136!10066-101I3;0.485878!10065-101I2;0.335799!10800-110I8;0.526817!10610-108F7;0.446602!10841-111E4;0.0154336!10541-107H1;0.392329!10842-111E5;0.373134!10562-108A4;0.0801898!10024-101D6;0.2715!10064-101I1;0.619089!10609-108F6;0.409191!10048-101G3;0.831547!10781-110G7;0.868306!10181-103D1;0.449744!10159-103A6;0.430262!10056-101H2;0.822882!10737-110B8;0.10026!10025-101D7;0.766838!10044-101F8;0.551601!10424-106D1;0.933143!10463-106H4;0.873414!10616-108G4;0.803815!10486-107A9;0.0451243!10062-101H8;0.643992!10202-103F4;0.278864!10158-103A5;0.667442!10441-106E9;0.984432!10031-101E4;0.00762839!10063-101H9;0.297018!10063-101H9;0.199908!11763-123H8;0.3089!11765-123I1;0.469201!11768-123I4;0.861452!10807-111A6;0.831602!10790-110H7;0.751878!10798-110I6;0.40107!10786-110H3;0.163583!10591-108D6;0.728437!10593-108D8;0.0140956!10590-108D5;0.56182!10026-101D8;0.459488!10096-102C6;0.185732!10168-103B6;0.107898!10154-103A1;0.420755!10209-103G2;0.51462!10061-101H7;0.356374!10027-101D9;0.36426!10043-101F7;0.855772!10783-110G9;0.928274!10028-101E1;0.505445!10060-101H6;0.473251!10203-103F5;0.429519!10059-101H5;0.547036!10047-101G2;0.513306!10029-101E2;0.893001!10058-101H4;0.924356!10418-106C4;0.443158!10492-107B6;0.830359!10694-109G1;0.331415!10797-110I5;0.983248!10057-101H3;0.580098!10100-102D1;0.68894!10055-101H1;0.616404!10204-103F6;0.228712!10191-103E2;0.869975!10563-108A5;0.994568
|name=18-GAAGTGGGTGG,CNhs13470,BestGuess:GLI3_si_HM09(0.721664887876974),T:598.0(9.25%),B:2289.8(5.37%),P:1e-35
|name=18-GAAGTGGGTGG,CNhs13470,BestGuess:GLI3_si_HM09(0.721664887876974),T:598.0(9.25%),B:2289.8(5.37%),P:1e-35
|tomtom_result=RREB1#MA0073.1;2;0.00226338;1.07737;1;11;GAAGTGGGTGG;TGGGGGGGGGTGGTTTGGGG;-!btd#MA0443.1;-2;0.00424891;2.02248;1;9;GAAGTGGGTGG;AGGGGGCGGA;+!GABPA#MA0062.2;3;0.0053569;2.54988;1;8;GAAGTGGGTGG;CCGGAAGTGGC;+!Nkx3-2#MA0122.1;1;0.00756745;3.6021;1;8;GAAGTGGGTGG;TTAAGTGGA;+!Egr1#MA0162.1;0;0.00997183;4.74659;1;11;GAAGTGGGTGG;TGCGTGGGCGT;+!YGR067C#MA0425.1;0;0.0111232;5.29462;1;11;GAAGTGGGTGG;TGAAAAAGTGGGGT;-!YPR022C#MA0436.1;-2;0.0149106;7.09743;1;7;GAAGTGGGTGG;CGTGGGG;-!AFT1#MA0269.1;1;0.0155257;7.39023;1;11;GAAGTGGGTGG;CCAATCGGGTGCAATATGTAA;-!ceh-22#MA0264.1;3;0.0174873;8.32394;1;8;GAAGTGGGTGG;TTTCAAGTGGT;-!Lag1#MA0193.1;-4;0.0194326;9.24992;1;7;GAAGTGGGTGG;TTGGTAG;-!Klf4#MA0039.2;-4;0.0206927;9.84974;1;7;GAAGTGGGTGG;TGGGTGGGGC;+!SP1#MA0079.2;-3;0.0206927;9.84974;1;8;GAAGTGGGTGG;GGGGGCGGGG;-
}}
}}

Latest revision as of 13:06, 7 September 2012

Full Name: 18-GAAGTGGGTGG,CNhs13470,BestGuess:GLI3_si_HM09(0.721664887876974),T:598.0(9.25%),B:2289.8(5.37%),P:1e-35

Motif matrix
POACGT
129.932.89500.52634.684
2491.55635.28249.03622.126
3507.70229.923.32237.076
422.12634.086493.94847.84
531.69420.33242.458503.516
642.45856.81476.60622.126
722.72440.664506.50628.106
817.34235.88514.2830.498
957.40883.7216.146440.726
1040.66436.478465.84255.016
1139.46842.458483.78232.292

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RREB1#MA0073.120.002263381.07737111GAAGTGGGTGGTGGGGGGGGGTGGTTTGGGG-
btd#MA0443.1-20.004248912.0224819GAAGTGGGTGGAGGGGGCGGA+
GABPA#MA0062.230.00535692.5498818GAAGTGGGTGGCCGGAAGTGGC+
Nkx3-2#MA0122.110.007567453.602118GAAGTGGGTGGTTAAGTGGA+
Egr1#MA0162.100.009971834.74659111GAAGTGGGTGGTGCGTGGGCGT+
YGR067C#MA0425.100.01112325.29462111GAAGTGGGTGGTGAAAAAGTGGGGT-
YPR022C#MA0436.1-20.01491067.0974317GAAGTGGGTGGCGTGGGG-
AFT1#MA0269.110.01552577.39023111GAAGTGGGTGGCCAATCGGGTGCAATATGTAA-
ceh-22#MA0264.130.01748738.3239418GAAGTGGGTGGTTTCAAGTGGT-
Lag1#MA0193.1-40.01943269.2499217GAAGTGGGTGGTTGGTAG-
Klf4#MA0039.2-40.02069279.8497417GAAGTGGGTGGTGGGTGGGGC+
SP1#MA0079.2-30.02069279.8497418GAAGTGGGTGGGGGGGCGGGG-
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