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MacroAPE 1083:SPDEF VCaP-SPDEF-ChIP-Seq/Homer: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;251;0;150;0!2;29;184;127;61!3;229;0;0;172!4;0;0;0;401!5;0;401;0;0!6;0;401;0;0!7;0;0;145;256!8;0;0;368;33!9;18;115;157;111!10;122;28;0;251 |...")
 
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526!11513-119H1;0.538812!11674-122G9;0.000410089!11290-117A3;4.93283e-05!11367-117I8;0.837211!11439-118H8;0.339152!11541-120B2;0.621878!11621-122B1;0.747749!11212-116A6;0.0623805!11466-119B8;0.904494!11368-117I9;0.452107!11440-118H9;0.00033359!11532-120A2;7.94081e-05!11693-123A1;0.0240759!11292-117A5;0.00164952!11369-118A1;0.199056!11441-118I1;0.877768!10007-101B4;0.767655!11520-119H8;1.24588e-06!11600-120H7;0.177001!11681-122H7;0.22408!11216-116B1;0.00970606!12179-129A1;0.776667!12180-129A2;8.38743e-11!12181-129A3;5.23325e-10!12176-128I7;3.91056e-09!12177-128I8;3.36555e-10!12182-129A4;4.05641e-10!12183-129A5;4.48189e-11!12184-129A6;2.08567e-10!10809-111A8;1.44056e-09!10597-108E3;0.0735395!10717-109I6;0.0801123!10455-106G5;0.0177291!10534-107G3;1.35371e-06!10429-106D6;0.00506922!10464-106H5;1.43984e-05!10827-111C8;4.77829e-05!10789-110H6;1.08262e-06!10828-111C9;2.37908e-07!10788-110H5;6.87865e-07!10792-110H9;0.00517427!10765-110E9;7.88938e-07!10829-111D1;5.00247e-05!10830-111D2;3.07366e-07!10831-111D3;6.50695e-10!10832-111D4;1.34263e-11!10833-111D5;9.69429e-06!10764-110E8;8.30773e-05!10770-110F5;0.00420267!10399-106A3;6.72232e-06!10400-106A4;0.000106737!10405-106A9;7.49963e-05!10834-111D6;8.75639e-05!10835-111D7;8.0588e-07!10836-111D8;6.44381e-05!10837-111D9;0.00755507!10699-109G6;3.30681e-06!10802-111A1;7.48489e-06!10796-110I4;5.8033e-06!10010-101C1;0.732962!10810-111A9;0.0412515!10421-106C7;0.898828!10708-109H6;4.7177e-10!12235-129G3;0.692273!12236-129G4;0.185612!12237-129G5;0.0049935!10167-103B5;0.52223!10151-102I7;0.00155666!10428-106D5;0.00170148!10795-110I3;0.254863!10805-111A4;0.00937218!10052-101G7;0.0232842!10189-103D9;2.29081e-06!10589-108D4;0.496595!10425-106D2;0.0174011!10427-106D4;0.0111966!10702-109G9;1.54418e-05!10432-106D9;0.0293252!10496-107C1;0.447894!10718-109I7;0.00352592!10011-101C2;1.93895e-07!10053-101G8;0.000215217!10686-109F2;3.25285e-06!10084-102B3;0.83677!10012-101C3;0.0001371!10085-102B4;0.0020377!10482-107A5;0.000167227!10419-106C5;0.248516!10080-102A8;0.161213!10760-110E4;1.85426e-05!10709-109H7;0.747992!10710-109H8;0.401762!10703-109H1;0.19236!10719-109I8;0.0161173!10642-109A3;0.042734!10177-103C6;2.17136e-05!10164-103B2;0.0022874!10173-103C2;0.00320948!10166-103B4;0.00094987!10083-102B2;0.00023677!10188-103D8;0.000121912!10552-107I3;0.000103223!10553-107I4;0.688006!10013-101C4;0.0164549!10536-107G5;3.1206e-05!10618-108G6;0.992988!10423-106C9;0.444196!10785-110H2;0.818033!12238-129G6;0.740863!12239-129G7;0.306469!12240-129G8;0.00665127!10416-106C2;0.185525!10801-110I9;1.62343e-07!10766-110F1;3.78772e-07!10824-111C5;1.65738e-06!10825-111C6;0.00565523!10826-111C7;0.00831393!10454-106G4;0.00119633!10409-106B4;0.0178845!10638-108I8;9.03955e-06!10636-108I6;0.589208!10513-107D9;0.793852!10420-106C6;0.0615202!10082-102B1;0.00386658!10014-101C5;2.85086e-05!10070-101I7;0.0018895!10452-106G2;6.06618e-07!10453-106G3;0.0147349!10449-106F8;0.0223849!10042-101F6;0.0190728!10069-101I6;0.00145771!10193-103E4;2.95484e-06!10631-108I1;0.00369084!10438-106E6;0.00107695!10488-107B2;0.947422!10196-103E7;0.598014!10071-101I8;0.000350846!10071-101I8;0.002249!10041-101F5;0.000420976!10451-106G1;0.176022!10450-106F9;0.733273!10604-108F1;0.215925!10605-108F2;0.814931!10606-108F3;0.39047!10603-108E9;0.660492!10497-107C2;0.527968!10448-106F7;0.275641!10643-109A4;0.0272302!10426-106D3;0.910014!10431-106D8;0.18238!10197-103E8;0.40766!10443-106F2;1.30824e-05!10815-111B5;0.426962!10816-111B6;0.677503!10817-111B7;0.760661!10015-101C6;0.58614!10410-106B5;5.52757e-05!10054-101G9;0.214136!10758-110E2;6.33049e-08!10711-109H9;4.55639e-08!10040-101F4;5.63897e-06!10470-106I2;0.00284598!10415-106C1;0.0918517!10198-103E9;0.060887!10614-108G2;0.0158382!10612-108F9;0.204248!10549-107H9;0.89767!10615-108G3;0.455348!10487-107B1;0.00219056!10433-106E1;0.0106978!10688-109F4;0.213287!10444-106F3;0.308881!10444-106F3;0.914903!10485-107A8;0.886965!10413-106B8;0.52706!10175-103C4;0.0871125!10161-103A8;0.00402656!12131-128D7;0.015389!10624-108H3;0.00246608!10712-109I1;0.00120697!10205-103F7;0.00141218!10206-103F8;1.18456e-05!10207-103F9;0.000289431!10050-101G5;0.055136!10051-101G6;3.52699e-14!10016-101C7;4.71174e-05!10046-101G1;0.000291878!10778-110G4;2.84127e-06!10633-108I3;0.088325!10818-111B8;0.0010107!10819-111B9;0.279887!10820-111C1;0.275039!10484-107A7;0.274557!10808-111A7;0.0363617!10169-103B7;1.04247e-07!10153-102I9;0.00308211!13425-144D5;0.000731074!13433-144E4;2.09754e-05!13437-144E8;3.13635e-05!11904-125F5;0.00019268!11905-125F6;0.000973139!10039-101F3;0.198012!10791-110H8;0.00149503!10017-101C8;0.931437!10045-101F9;0.00560654!10509-107D5;5.93119e-13!10839-111E2;0.00607486!10692-109F8;0.963724!10079-102A7;0.00345477!10078-102A6;0.00185521!10721-110A1;0.00117059!10569-108B2;0.53805!10570-108B3;0.177225!10571-108B4;0.417147!10647-109A8;0.167651!10752-110D5;0.816373!10782-110G8;0.000338603!10726-110A6;0.0764266!10018-101C9;0.286578!10086-102B5;0.354707!10182-103D2;0.0260206!10165-103B3;0.000745336!10499-107C4;0.00244724!10408-106B3;0.941446!10019-101D1;0.104658!10068-101I5;0.110662!10075-102A3;0.00101618!10077-102A5;0.705415!10727-110A7;0.000633202!10775-110G1;5.72843e-05!10412-106B7;5.84102e-06!12231-129F8;0.451287!12232-129F9;0.000133409!12233-129G1;0.00566828!12234-129G2;0.000338756!10414-106B9;0.000117061!10170-103B8;0.196014!10183-103D3;0.00560946!10150-102I6;0.00271793!10174-103C3;0.00318816!10155-103A2;0.000281341!10038-101F2;0.000341478!10838-111E1;0.000415091!10759-110E3;1.14311e-05!10514-107E1;0.899765!10465-106H6;0.331667!10691-109F7;0.397237!10843-111E6;0.196432!10844-111E7;0.0718547!11747-123G1;0.012718!11748-123G2;0.902655!11749-123G3;0.0151735!11750-123G4;0.0994765!11751-123G5;0.0779963!11840-124H4;0.000139878!11752-123G6;6.94408e-05!11753-123G7;0.879834!11754-123G8;0.000884689!11755-123G9;0.88838!11756-123H1;0.180202!11833-124G6;0.229738!11760-123H5;0.172088!11836-124G9;0.992671!11758-123H3;0.540271!11835-124G8;0.662354!11762-123H7;0.0786543!11838-124H2;0.0854807!11757-123H2;0.072006!11759-123H4;0.92428!11761-123H6;0.572431!11842-124H6;0.200494!11837-124H1;0.189328!10568-108B1;0.100478!13230-141I8;0.00106575!13231-141I9;0.00887625!10696-109G3;0.00239627!10493-107B7;0.116606!10494-107B8;0.438358!10850-111F4;0.624782!10851-111F5;0.932817!10852-111F6;0.766107!10853-111F7;0.473493!10854-111F8;0.973689!10855-111F9;0.380758!10856-111G1;0.01392!10847-111F1;0.266012!10846-111E9;0.151775!10848-111F2;0.649299!10845-111E8;0.40038!10857-111G2;0.314057!10858-111G3;0.834929!10156-103A3;0.860571!11901-125F2;0.00496556!11902-125F3;0.000207452!11903-125F4;9.2844e-06!10689-109F5;5.00691e-07!10648-109A9;0.0498595!10784-110H1;0.114743!10744-110C6;0.177614!10772-110F7;3.1164e-06!10474-106I6;0.00246802!10600-108E6;2.08566e-08!10684-109E9;0.0174681!12226-129F3;0.648006!12227-129F4;0.944462!10508-107D4;0.00319294!10539-107G8;0.00891978!10607-108F4;0.00153364!10555-107I6;0.107406!10774-110F9;0.00117176!10637-108I7;0.702539!10663-109C6;0.00891003!10728-110A8;0.0523601!10729-110A9;0.0535594!10430-106D7;0.000426946!10730-110B1;0.0293391!10813-111B3;0.0669109!10812-111B2;0.000249162!10037-101F1;0.00228027!10172-103C1;0.00153795!10163-103B1;0.00567561!10076-102A4;0.00330848!10073-102A1;0.00153267!10036-101E9;0.00121196!10195-103E6;0.000644928!10277-104E7;0.000971191!10434-106E2;0.0134799!10550-107I1;0.717734!10545-107H5;0.0610331!10544-107H4;0.521034!10704-109H2;0.302345!10510-107D6;0.600249!10558-107I9;0.551884!10020-101D2;0.000634439!10732-110B3;1.75507e-06!10049-101G4;0.82062!10698-109G5;0.131483!10437-106E5;0.418374!10417-106C3;0.885052!10035-101E8;0.673304!10171-103B9;0.0016142!10157-103A4;0.00376344!10034-101E7;0.00278664!10072-101I9;0.00133101!10199-103F1;0.000590508!10200-103F2;0.768659!10697-109G4;2.10935e-06!10723-110A3;0.186061!10179-103C8;0.0648456!10160-103A7;0.00148023!10180-103C9;0.0147668!10162-103A9;0.0507845!10021-101D3;0.0274061!10840-111E3;0.0835901!10706-109H4;0.00108287!10033-101E6;0.575331!10032-101E5;0.00306815!10490-107B4;0.00118385!10439-106E7;0.419431!10022-101D4;0.884117!10176-103C5;4.26755e-05!10469-106I1;0.00266519!10067-101I4;0.304425!10411-106B6;7.54945e-08!10471-106I3;0.720866!10030-101E3;0.564081!10475-106I7;5.755e-06!10787-110H4;0.0205684!10477-106I9;0.619816!10695-109G2;7.77936e-06!11771-123I7;0.000729135!11772-123I8;0.00543468!11773-123I9;0.000176005!10093-102C3;0.000323018!10442-106F1;0.926646!10442-106F1;0.000984538!10201-103F3;0.000902734!10639-108I9;0.00129035!11843-124H7;0.00950387!11841-124H5;0.0704206!10693-109F9;0.236016!10436-106E4;0.188473!10483-107A6;0.0575714!10282-104F3;0.0109327!10023-101D5;0.00287119!10066-101I3;1.04111e-05!10065-101I2;8.1863e-09!10800-110I8;6.57877e-09!10610-108F7;0.0262409!10841-111E4;0.000345951!10541-107H1;0.115953!10842-111E5;0.0422146!10562-108A4;0.00289082!10024-101D6;0.0373799!10064-101I1;0.304199!10609-108F6;0.000999505!10048-101G3;0.148269!10781-110G7;7.58482e-05!10181-103D1;0.913617!10159-103A6;0.000371071!10056-101H2;0.00926307!10737-110B8;3.57995e-07!10025-101D7;0.0154313!10044-101F8;0.000320405!10424-106D1;0.164034!10463-106H4;1.22779e-11!10616-108G4;0.861292!10486-107A9;7.19616e-07!10062-101H8;3.2527e-05!10202-103F4;0.000407017!10158-103A5;0.907993!10441-106E9;0.0215272!10031-101E4;0.00205436!10063-101H9;0.000545849!10063-101H9;0.000180889!11763-123H8;0.00335177!11765-123I1;1.88884e-05!11768-123I4;1.05309e-06!10807-111A6;0.000920801!10790-110H7;0.0686878!10798-110I6;0.20949!10786-110H3;0.215275!10591-108D6;0.0762233!10593-108D8;0.177948!10590-108D5;0.233181!10026-101D8;0.904418!10096-102C6;5.80987e-06!10168-103B6;0.000197521!10154-103A1;0.00424772!10209-103G2;0.0070612!10061-101H7;0.000164906!10027-101D9;6.4944e-06!10043-101F7;1.46071e-06!10783-110G9;0.00944246!10028-101E1;0.186127!10060-101H6;0.0100544!10203-103F5;0.000517275!10059-101H5;2.49466e-06!10047-101G2;8.18101e-09!10029-101E2;0.182839!10058-101H4;0.0260865!10418-106C4;1.06379e-06!10492-107B6;0.270066!10694-109G1;0.406368!10797-110I5;0.000296634!10057-101H3;0.577223!10100-102D1;1.69064e-07!10055-101H1;0.00185016!10204-103F6;1.70147e-09!10191-103E2;4.43967e-07!10563-108A5;0.453818
|name=SPDEF_VCaP-SPDEF-ChIP-Seq/Homer
|name=SPDEF_VCaP-SPDEF-ChIP-Seq/Homer
|tomtom_result=FEV#MA0156.1;0;8.86645e-05;0.0422043;0.07826;8;ACATCCTGGT;ATTTCCTG;-!ELK4#MA0076.1;0;0.000249047;0.118546;0.07826;9;ACATCCTGGT;ACTTCCGGT;-!ELF5#MA0136.1;1;0.000249047;0.118546;0.07826;8;ACATCCTGGT;TACTTCCTT;+!Eip74EF#MA0026.1;-1;0.000496716;0.236437;0.103761;7;ACATCCTGGT;CTTCCGG;-!ELK1#MA0028.1;-1;0.000550333;0.261958;0.103761;9;ACATCCTGGT;CTTCCGGCTC;-!IXR1#MA0323.1;4;0.000818013;0.389374;0.114041;10;ACATCCTGGT;CCCCGCTTCCGGCTT;-!ASG1#MA0275.1;-2;0.000846796;0.403075;0.114041;6;ACATCCTGGT;TTCCGG;-!ETS1#MA0098.1;-1;0.00140442;0.668502;0.165495;6;ACATCCTGGT;CTTCCG;+!Stat3#MA0144.1;-1;0.00163573;0.778606;0.170002;9;ACATCCTGGT;CTTCCTGGAA;-!GABPA#MA0062.2;3;0.00180333;0.858385;0.170002;8;ACATCCTGGT;GCCACTTCCGG;-!SPI1#MA0080.2;0;0.00279038;1.32822;0.234306;7;ACATCCTGGT;ACTTCCT;-!CAT8#MA0280.1;-2;0.00298253;1.41968;0.234306;6;ACATCCTGGT;TTCCGG;-!STAT1#MA0137.2;1;0.00368959;1.75624;0.253482;10;ACATCCTGGT;GGTTTCCGGGAAATG;-!GABPA#MA0062.2;1;0.00376439;1.79185;0.253482;9;ACATCCTGGT;CTCTTCCGGT;-!SPI1#MA0080.2;-1;0.00919544;4.37703;0.565033;6;ACATCCTGGT;CTTCCG;-!YDR026C#MA0421.1;-3;0.0112635;5.36141;0.618737;7;ACATCCTGGT;GCCGGGTAAA;-!ECM22#MA0292.1;-3;0.011814;5.62349;0.618737;7;ACATCCTGGT;TCCGGAG;-!YBR239C#MA0420.1;-1;0.0138454;6.5904;0.686959;8;ACATCCTGGT;GTTCCGGT;-!SPIB#MA0081.1;-2;0.0157884;7.51528;0.744197;7;ACATCCTGGT;TTCCTCT;-!YER184C#MA0424.1;-2;0.0172807;8.22561;0.748035;8;ACATCCTGGT;TTCCGGAG;-!YJL103C#MA0427.1;0;0.0176729;8.41231;0.748035;10;ACATCCTGGT;AGCTCCGGAGA;+!ARR10#MA0121.1;0;0.0182503;8.68714;0.748035;8;ACATCCTGGT;AGATCCGC;+!LYS14#MA0325.1;0;0.0203363;9.68008;0.766852;8;ACATCCTGGT;AATTCCGG;-
}}
}}

Latest revision as of 13:12, 7 September 2012

Full Name: SPDEF_VCaP-SPDEF-ChIP-Seq/Homer

Motif matrix
POACGT
125101500
22918412761
322900172
4000401
5040100
6040100
700145256
80036833
918115157111
10122280251

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
FEV#MA0156.108.86645e-050.04220430.078268ACATCCTGGTATTTCCTG-
ELK4#MA0076.100.0002490470.1185460.078269ACATCCTGGTACTTCCGGT-
ELF5#MA0136.110.0002490470.1185460.078268ACATCCTGGTTACTTCCTT+
Eip74EF#MA0026.1-10.0004967160.2364370.1037617ACATCCTGGTCTTCCGG-
ELK1#MA0028.1-10.0005503330.2619580.1037619ACATCCTGGTCTTCCGGCTC-
IXR1#MA0323.140.0008180130.3893740.11404110ACATCCTGGTCCCCGCTTCCGGCTT-
ASG1#MA0275.1-20.0008467960.4030750.1140416ACATCCTGGTTTCCGG-
ETS1#MA0098.1-10.001404420.6685020.1654956ACATCCTGGTCTTCCG+
Stat3#MA0144.1-10.001635730.7786060.1700029ACATCCTGGTCTTCCTGGAA-
GABPA#MA0062.230.001803330.8583850.1700028ACATCCTGGTGCCACTTCCGG-
SPI1#MA0080.200.002790381.328220.2343067ACATCCTGGTACTTCCT-
CAT8#MA0280.1-20.002982531.419680.2343066ACATCCTGGTTTCCGG-
STAT1#MA0137.210.003689591.756240.25348210ACATCCTGGTGGTTTCCGGGAAATG-
GABPA#MA0062.210.003764391.791850.2534829ACATCCTGGTCTCTTCCGGT-
SPI1#MA0080.2-10.009195444.377030.5650336ACATCCTGGTCTTCCG-
YDR026C#MA0421.1-30.01126355.361410.6187377ACATCCTGGTGCCGGGTAAA-
ECM22#MA0292.1-30.0118145.623490.6187377ACATCCTGGTTCCGGAG-
YBR239C#MA0420.1-10.01384546.59040.6869598ACATCCTGGTGTTCCGGT-
SPIB#MA0081.1-20.01578847.515280.7441977ACATCCTGGTTTCCTCT-
YER184C#MA0424.1-20.01728078.225610.7480358ACATCCTGGTTTCCGGAG-
YJL103C#MA0427.100.01767298.412310.74803510ACATCCTGGTAGCTCCGGAGA+
ARR10#MA0121.100.01825038.687140.7480358ACATCCTGGTAGATCCGC+
LYS14#MA0325.100.02033639.680080.7668528ACATCCTGGTAATTCCGG-
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:SPDEF_VCaP-SPDEF-ChIP-Seq/Homer&oldid=2133921"