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MacroAPE 1083:16-ATGACTCACTT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;210.087;28.614;0.502;11.797!2;52.71;29.618;0.251;168.421!3;50.702;35.391;113.452;51.455!4;181.222;64.507;0.251;5.02!5;29.869;161.644;58.985;...")
 
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7G3;0.0337406!10429-106D6;7.22214e-05!10464-106H5;0.159536!10827-111C8;0.00962505!10789-110H6;0.267149!10828-111C9;0.363808!10788-110H5;0.638149!10792-110H9;0.451684!10765-110E9;0.770828!10829-111D1;0.124412!10830-111D2;0.333587!10831-111D3;0.351446!10832-111D4;0.806085!10833-111D5;0.0365264!10764-110E8;0.107414!10770-110F5;0.742459!10399-106A3;0.572936!10400-106A4;0.259257!10405-106A9;0.317611!10834-111D6;0.282148!10835-111D7;0.504627!10836-111D8;0.355277!10837-111D9;0.33985!10699-109G6;0.909824!10802-111A1;0.134491!10796-110I4;0.770046!10010-101C1;0.276883!10810-111A9;0.352306!10421-106C7;0.0694919!10708-109H6;0.0550433!12235-129G3;0.882971!12236-129G4;0.62144!12237-129G5;0.023318!10167-103B5;0.438606!10151-102I7;0.456173!10428-106D5;0.53464!10795-110I3;0.81035!10805-111A4;0.0757726!10052-101G7;0.0298808!10189-103D9;0.297578!10589-108D4;0.955733!10425-106D2;0.0617983!10427-106D4;0.22625!10702-109G9;0.280049!10432-106D9;0.0154876!10496-107C1;0.848257!10718-109I7;0.789439!10011-101C2;0.382684!10053-101G8;0.579727!10686-109F2;0.680289!10084-102B3;0.744529!10012-101C3;0.47648!10085-102B4;0.784054!10482-107A5;0.320298!10419-106C5;0.0143849!10080-102A8;0.0119033!10760-110E4;0.884187!10709-109H7;0.778746!10710-109H8;0.293281!10703-109H1;0.218295!10719-109I8;0.262521!10642-109A3;0.00703785!10177-103C6;0.126445!10164-103B2;0.669341!10173-103C2;0.58631!10166-103B4;0.278787!10083-102B2;0.298191!10188-103D8;0.245391!10552-107I3;0.826051!10553-107I4;0.0723432!10013-101C4;0.860904!10536-107G5;0.572213!10618-108G6;0.275953!10423-106C9;0.0226744!10785-110H2;0.0111258!12238-129G6;0.0155319!12239-129G7;0.822177!12240-129G8;0.285082!10416-106C2;0.325445!10801-110I9;0.0386142!10766-110F1;0.367167!10824-111C5;0.960703!10825-111C6;0.204779!10826-111C7;0.305841!10454-106G4;0.338259!10409-106B4;0.153575!10638-108I8;0.764272!10636-108I6;0.957107!10513-107D9;0.966605!10420-106C6;0.044369!10082-102B1;0.0305649!10014-101C5;0.145483!10070-101I7;0.489782!10452-106G2;0.943814!10453-106G3;0.555984!10449-106F8;0.34112!10042-101F6;0.299747!10069-101I6;0.965927!10193-103E4;0.78834!10631-108I1;0.74727!10438-106E6;0.00508299!10488-107B2;0.571158!10196-103E7;0.417554!10071-101I8;0.87226!10071-101I8;0.763888!10041-101F5;0.441155!10451-106G1;0.520286!10450-106F9;0.99652!10604-108F1;0.359501!10605-108F2;0.743652!10606-108F3;0.754306!10603-108E9;0.948322!10497-107C2;0.798142!10448-106F7;0.874644!10643-109A4;0.599232!10426-106D3;0.83113!10431-106D8;0.320903!10197-103E8;0.285815!10443-106F2;0.2535!10815-111B5;0.343254!10816-111B6;0.201052!10817-111B7;0.243938!10015-101C6;0.202943!10410-106B5;0.762567!10054-101G9;0.193001!10758-110E2;0.692456!10711-109H9;0.52922!10040-101F4;0.880468!10470-106I2;0.480586!10415-106C1;0.123698!10198-103E9;0.498424!10614-108G2;0.340922!10612-108F9;0.292367!10549-107H9;0.549142!10615-108G3;0.264986!10487-107B1;0.297709!10433-106E1;0.0382786!10688-109F4;0.0626909!10444-106F3;0.584842!10444-106F3;0.238142!10485-107A8;0.15576!10413-106B8;0.0573147!10175-103C4;0.212244!10161-103A8;0.766811!12131-128D7;0.885112!10624-108H3;0.576896!10712-109I1;0.820572!10205-103F7;0.102832!10206-103F8;0.293589!10207-103F9;0.777477!10050-101G5;0.459385!10051-101G6;0.345538!10016-101C7;0.293109!10046-101G1;0.353315!10778-110G4;0.278934!10633-108I3;0.445956!10818-111B8;0.0313426!10819-111B9;0.000284818!10820-111C1;6.36759e-05!10484-107A7;0.000159571!10808-111A7;0.0471661!10169-103B7;0.0111893!10153-102I9;0.498516!13425-144D5;0.605017!13433-144E4;0.0352823!13437-144E8;0.266007!11904-125F5;0.287912!11905-125F6;0.354154!10039-101F3;0.563881!10791-110H8;0.552154!10017-101C8;0.0940206!10045-101F9;0.603433!10509-107D5;0.391018!10839-111E2;0.397943!10692-109F8;0.129788!10079-102A7;0.680869!10078-102A6;0.190798!10721-110A1;0.278369!10569-108B2;0.00250231!10570-108B3;0.14618!10571-108B4;0.0375371!10647-109A8;0.042227!10752-110D5;0.39735!10782-110G8;0.849631!10726-110A6;0.804612!10018-101C9;0.875096!10086-102B5;0.0477948!10182-103D2;0.402589!10165-103B3;0.667834!10499-107C4;0.739753!10408-106B3;0.743102!10019-101D1;0.727996!10068-101I5;0.586195!10075-102A3;0.836951!10077-102A5;0.805812!10727-110A7;0.177583!10775-110G1;0.0412332!10412-106B7;0.0138095!12231-129F8;0.580778!12232-129F9;0.836771!12233-129G1;0.529561!12234-129G2;0.525278!10414-106B9;0.868011!10170-103B8;0.386116!10183-103D3;0.434972!10150-102I6;0.456737!10174-103C3;0.663299!10155-103A2;0.573725!10038-101F2;0.848835!10838-111E1;0.70388!10759-110E3;0.00317089!10514-107E1;0.0203943!10465-106H6;0.322396!10691-109F7;0.43115!10843-111E6;0.788696!10844-111E7;0.0801452!11747-123G1;0.15198!11748-123G2;0.52944!11749-123G3;0.339542!11750-123G4;0.374793!11751-123G5;0.348534!11840-124H4;0.464144!11752-123G6;0.547663!11753-123G7;0.140795!11754-123G8;0.320872!11755-123G9;0.220494!11756-123H1;0.15763!11833-124G6;0.00441101!11760-123H5;0.000866736!11836-124G9;0.0314694!11758-123H3;0.12152!11835-124G8;0.0107444!11762-123H7;0.00592502!11838-124H2;0.0155689!11757-123H2;0.0128982!11759-123H4;0.0393554!11761-123H6;0.0282688!11842-124H6;0.00366296!11837-124H1;0.000590477!10568-108B1;0.00547445!13230-141I8;0.658729!13231-141I9;0.0391215!10696-109G3;0.0442514!10493-107B7;0.603316!10494-107B8;0.880811!10850-111F4;0.334058!10851-111F5;0.715604!10852-111F6;0.665613!10853-111F7;0.789699!10854-111F8;0.537178!10855-111F9;0.640721!10856-111G1;0.647969!10847-111F1;0.46524!10846-111E9;0.681565!10848-111F2;0.909423!10845-111E8;0.436459!10857-111G2;0.61994!10858-111G3;0.825656!10156-103A3;0.391234!11901-125F2;0.588373!11902-125F3;0.918262!11903-125F4;0.810053!10689-109F5;0.762226!10648-109A9;0.842608!10784-110H1;0.997135!10744-110C6;0.746731!10772-110F7;0.0591124!10474-106I6;0.208012!10600-108E6;0.485429!10684-109E9;0.844514!12226-129F3;0.191794!12227-129F4;0.934184!10508-107D4;0.159994!10539-107G8;0.0525224!10607-108F4;0.0369354!10555-107I6;0.00176616!10774-110F9;0.0171062!10637-108I7;0.0013149!10663-109C6;2.79089e-06!10728-110A8;0.0044014!10729-110A9;7.59198e-06!10430-106D7;0.501757!10730-110B1;0.00871407!10813-111B3;0.36629!10812-111B2;0.0358884!10037-101F1;0.739142!10172-103C1;0.488924!10163-103B1;0.642333!10076-102A4;0.893988!10073-102A1;0.649909!10036-101E9;0.300854!10195-103E6;0.740058!10277-104E7;0.465568!10434-106E2;0.777748!10550-107I1;0.120677!10545-107H5;0.212247!10544-107H4;0.204997!10704-109H2;0.235834!10510-107D6;0.0727857!10558-107I9;0.955211!10020-101D2;0.0250525!10732-110B3;0.806259!10049-101G4;0.472598!10698-109G5;0.177059!10437-106E5;0.00776994!10417-106C3;0.808875!10035-101E8;0.793167!10171-103B9;0.577951!10157-103A4;0.381863!10034-101E7;0.682476!10072-101I9;0.643831!10199-103F1;0.251193!10200-103F2;0.0848672!10697-109G4;0.978087!10723-110A3;0.00844657!10179-103C8;0.776607!10160-103A7;0.144224!10180-103C9;0.0526997!10162-103A9;0.705585!10021-101D3;0.142396!10840-111E3;0.949358!10706-109H4;0.518557!10033-101E6;0.925197!10032-101E5;0.736602!10490-107B4;0.551968!10439-106E7;0.498435!10022-101D4;0.529044!10176-103C5;0.836916!10469-106I1;0.483543!10067-101I4;0.480046!10411-106B6;0.360629!10471-106I3;0.353307!10030-101E3;0.461638!10475-106I7;0.848687!10787-110H4;0.00516048!10477-106I9;0.0133402!10695-109G2;0.0161917!11771-123I7;0.665298!11772-123I8;0.727319!11773-123I9;0.913354!10093-102C3;0.448639!10442-106F1;0.20472!10442-106F1;0.8508!10201-103F3;0.987912!10639-108I9;0.896248!11843-124H7;0.608355!11841-124H5;0.248245!10693-109F9;0.795057!10436-106E4;0.136205!10483-107A6;0.827181!10282-104F3;0.760314!10023-101D5;0.262376!10066-101I3;0.8374!10065-101I2;0.802434!10800-110I8;0.963249!10610-108F7;0.434834!10841-111E4;0.352613!10541-107H1;0.00237234!10842-111E5;0.116339!10562-108A4;0.0215363!10024-101D6;0.661695!10064-101I1;0.367095!10609-108F6;0.460138!10048-101G3;0.450781!10781-110G7;0.806609!10181-103D1;0.638284!10159-103A6;0.966286!10056-101H2;0.988177!10737-110B8;0.623767!10025-101D7;0.209967!10044-101F8;0.40668!10424-106D1;0.946025!10463-106H4;0.219093!10616-108G4;0.44648!10486-107A9;0.887934!10062-101H8;0.431425!10202-103F4;0.683818!10158-103A5;0.372124!10441-106E9;0.882445!10031-101E4;0.0578452!10063-101H9;0.603239!10063-101H9;0.282329!11763-123H8;0.788846!11765-123I1;0.155578!11768-123I4;0.244781!10807-111A6;0.137798!10790-110H7;0.116567!10798-110I6;0.00130228!10786-110H3;2.50175e-05!10591-108D6;0.092173!10593-108D8;0.000789756!10590-108D5;0.00589727!10026-101D8;0.0247577!10096-102C6;0.743857!10168-103B6;0.0612765!10154-103A1;0.930392!10209-103G2;0.729227!10061-101H7;0.859519!10027-101D9;0.53046!10043-101F7;0.0175811!10783-110G9;0.0587008!10028-101E1;0.905436!10060-101H6;0.452724!10203-103F5;0.837474!10059-101H5;0.81977!10047-101G2;0.881669!10029-101E2;0.438237!10058-101H4;0.899243!10418-106C4;0.882809!10492-107B6;0.178453!10694-109G1;0.631515!10797-110I5;0.621033!10057-101H3;0.184081!10100-102D1;0.428773!10055-101H1;0.996217!10204-103F6;0.162734!10191-103E2;0.538378!10563-108A5;0.768378
|name=16-ATGACTCACTT,CNhs13470,BestGuess:FOS_FOS{B,L1}_JUN{B,D}.p2.SwissRegulon.nucfreq(0.725128996863668),T:251.0(3.88%),B:660.4(1.55%),P:1e-36
|name=16-ATGACTCACTT,CNhs13470,BestGuess:FOS_FOS{B,L1}_JUN{B,D}.p2.SwissRegulon.nucfreq(0.725128996863668),T:251.0(3.88%),B:660.4(1.55%),P:1e-36
|tomtom_result=Fos#MA0099.1;-1;7.92044e-05;0.0377013;0.0753835;8;ATGACTCACTT;TGACTCAC;-!AP1#MA0099.2;-1;0.000677837;0.32265;0.322569;7;ATGACTCACTT;TGACTCA;+!GCN4#MA0303.1;6;0.00175141;0.833672;0.55564;11;ATGACTCACTT;TGAAGTATGACTCATCCCTTG;-!ARG81#MA0272.1;0;0.00342333;1.62951;0.651638;8;ATGACTCACTT;GTGACTCT;+!Trl#MA0205.1;-1;0.010339;4.92138;0.999747;10;ATGACTCACTT;TTGCTCTCTC;+!RORA_2#MA0072.1;0;0.0147427;7.01754;0.999747;11;ATGACTCACTT;TTGACCTACTTATA;-!NFE2L1::MafG#MA0089.1;1;0.014866;7.07623;0.999747;5;ATGACTCACTT;CATGAC;+
}}
}}

Latest revision as of 13:57, 7 September 2012

Full Name: 16-ATGACTCACTT,CNhs13470,BestGuess:FOS_FOS{B,L1}_JUN{B,D}.p2.SwissRegulon.nucfreq(0.725128996863668),T:251.0(3.88%),B:660.4(1.55%),P:1e-36

Motif matrix
POACGT
1210.08728.6140.50211.797
252.7129.6180.251168.421
350.70235.391113.45251.455
4181.22264.5070.2515.02
529.869161.64458.9850.502
622.5956.97733.885137.548
748.192122.73941.41538.654
8160.89143.4230.25146.435
934.638180.21825.111.044
1048.19220.58227.861154.365
1126.10453.21219.578152.106

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Fos#MA0099.1-17.92044e-050.03770130.07538358ATGACTCACTTTGACTCAC-
AP1#MA0099.2-10.0006778370.322650.3225697ATGACTCACTTTGACTCA+
GCN4#MA0303.160.001751410.8336720.5556411ATGACTCACTTTGAAGTATGACTCATCCCTTG-
ARG81#MA0272.100.003423331.629510.6516388ATGACTCACTTGTGACTCT+
Trl#MA0205.1-10.0103394.921380.99974710ATGACTCACTTTTGCTCTCTC+
RORA_2#MA0072.100.01474277.017540.99974711ATGACTCACTTTTGACCTACTTATA-
NFE2L1::MafG#MA0089.110.0148667.076230.9997475ATGACTCACTTCATGAC+
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