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MacroAPE 1083:SOX18 f1: Difference between revisions

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-111C8;0.283166!10789-110H6;0.0715278!10828-111C9;0.0896776!10788-110H5;0.113133!10792-110H9;0.0313519!10765-110E9;0.0646844!10829-111D1;0.666369!10830-111D2;0.190865!10831-111D3;0.044906!10832-111D4;0.294433!10833-111D5;0.273075!10764-110E8;0.336852!10770-110F5;0.0642172!10399-106A3;0.100668!10400-106A4;0.132402!10405-106A9;0.142436!10834-111D6;0.170281!10835-111D7;0.0833774!10836-111D8;0.333088!10837-111D9;0.123921!10699-109G6;0.0282926!10802-111A1;0.867656!10796-110I4;0.0471853!10010-101C1;0.802184!10810-111A9;0.954714!10421-106C7;0.96821!10708-109H6;0.736315!12235-129G3;0.956562!12236-129G4;0.906596!12237-129G5;0.297748!10167-103B5;0.864175!10151-102I7;0.933526!10428-106D5;0.805091!10795-110I3;0.0769883!10805-111A4;0.592349!10052-101G7;0.722806!10189-103D9;0.558286!10589-108D4;0.676431!10425-106D2;0.0127243!10427-106D4;0.371994!10702-109G9;0.0665399!10432-106D9;0.800347!10496-107C1;0.617248!10718-109I7;0.164671!10011-101C2;0.393742!10053-101G8;0.723103!10686-109F2;0.595394!10084-102B3;0.614597!10012-101C3;0.43009!10085-102B4;0.696739!10482-107A5;0.187547!10419-106C5;0.470248!10080-102A8;0.468285!10760-110E4;0.905138!10709-109H7;0.328851!10710-109H8;0.608743!10703-109H1;0.326591!10719-109I8;0.382839!10642-109A3;0.357678!10177-103C6;0.381003!10164-103B2;0.521506!10173-103C2;0.589177!10166-103B4;0.730435!10083-102B2;0.586006!10188-103D8;0.395505!10552-107I3;0.415322!10553-107I4;0.384566!10013-101C4;0.459365!10536-107G5;0.692975!10618-108G6;0.434163!10423-106C9;0.104581!10785-110H2;0.358218!12238-129G6;0.190231!12239-129G7;0.696692!12240-129G8;0.653083!10416-106C2;0.204865!10801-110I9;0.675493!10766-110F1;0.98438!10824-111C5;0.192604!10825-111C6;0.147449!10826-111C7;0.0955894!10454-106G4;0.0951097!10409-106B4;0.489587!10638-108I8;0.225934!10636-108I6;0.701349!10513-107D9;0.673532!10420-106C6;0.653726!10082-102B1;0.200149!10014-101C5;0.554095!10070-101I7;0.239509!10452-106G2;0.467635!10453-106G3;0.374338!10449-106F8;0.58954!10042-101F6;0.6205!10069-101I6;0.236342!10193-103E4;0.975641!10631-108I1;0.434979!10438-106E6;0.650629!10488-107B2;0.791934!10196-103E7;0.933817!10071-101I8;0.974972!10071-101I8;0.32657!10041-101F5;0.193486!10451-106G1;0.62294!10450-106F9;0.801552!10604-108F1;0.392708!10605-108F2;0.242897!10606-108F3;0.763009!10603-108E9;0.491432!10497-107C2;0.438641!10448-106F7;0.43974!10643-109A4;0.812007!10426-106D3;0.665639!10431-106D8;0.94376!10197-103E8;0.931861!10443-106F2;0.807637!10815-111B5;0.261926!10816-111B6;0.940405!10817-111B7;0.699643!10015-101C6;0.839282!10410-106B5;0.867209!10054-101G9;0.540751!10758-110E2;0.603167!10711-109H9;0.853706!10040-101F4;0.704929!10470-106I2;0.568368!10415-106C1;0.835299!10198-103E9;0.439067!10614-108G2;0.542673!10612-108F9;0.946058!10549-107H9;0.559441!10615-108G3;0.33459!10487-107B1;0.0702922!10433-106E1;0.93711!10688-109F4;0.994424!10444-106F3;0.814801!10444-106F3;0.915925!10485-107A8;0.971929!10413-106B8;0.409416!10175-103C4;0.380456!10161-103A8;0.355802!12131-128D7;0.475792!10624-108H3;0.882616!10712-109I1;0.114153!10205-103F7;0.32531!10206-103F8;0.543354!10207-103F9;0.324973!10050-101G5;0.613589!10051-101G6;0.20243!10016-101C7;0.192007!10046-101G1;0.135728!10778-110G4;0.0547914!10633-108I3;0.743421!10818-111B8;0.463184!10819-111B9;0.227842!10820-111C1;0.222969!10484-107A7;0.254237!10808-111A7;0.521418!10169-103B7;0.217346!10153-102I9;0.878001!13425-144D5;0.68041!13433-144E4;0.992901!13437-144E8;0.802366!11904-125F5;0.647266!11905-125F6;0.68043!10039-101F3;0.5582!10791-110H8;0.54536!10017-101C8;0.77556!10045-101F9;0.664782!10509-107D5;0.306574!10839-111E2;0.997964!10692-109F8;0.241217!10079-102A7;0.600862!10078-102A6;0.570425!10721-110A1;0.210538!10569-108B2;0.999733!10570-108B3;0.621409!10571-108B4;0.894893!10647-109A8;0.401828!10752-110D5;0.507669!10782-110G8;0.191085!10726-110A6;0.272028!10018-101C9;0.656715!10086-102B5;0.879277!10182-103D2;0.810533!10165-103B3;0.824591!10499-107C4;0.663174!10408-106B3;0.370652!10019-101D1;0.47272!10068-101I5;0.699134!10075-102A3;0.182868!10077-102A5;0.809563!10727-110A7;0.0917333!10775-110G1;0.359821!10412-106B7;0.162565!12231-129F8;0.521722!12232-129F9;0.740245!12233-129G1;0.401694!12234-129G2;0.934187!10414-106B9;0.674415!10170-103B8;0.162186!10183-103D3;0.889067!10150-102I6;0.714625!10174-103C3;0.897683!10155-103A2;0.698923!10038-101F2;0.619835!10838-111E1;0.504526!10759-110E3;0.17028!10514-107E1;0.132779!10465-106H6;0.0879592!10691-109F7;0.0606676!10843-111E6;0.683214!10844-111E7;0.236411!11747-123G1;0.0311614!11748-123G2;0.584248!11749-123G3;0.760738!11750-123G4;0.902843!11751-123G5;0.506286!11840-124H4;0.567271!11752-123G6;0.352384!11753-123G7;0.998967!11754-123G8;0.19597!11755-123G9;0.239989!11756-123H1;0.725961!11833-124G6;0.765146!11760-123H5;0.542093!11836-124G9;0.953419!11758-123H3;0.666677!11835-124G8;0.914024!11762-123H7;0.843028!11838-124H2;0.45038!11757-123H2;0.44624!11759-123H4;0.987142!11761-123H6;0.547801!11842-124H6;0.947581!11837-124H1;0.646624!10568-108B1;0.936917!13230-141I8;0.432993!13231-141I9;0.567608!10696-109G3;0.56178!10493-107B7;0.391025!10494-107B8;0.419475!10850-111F4;0.511089!10851-111F5;0.422968!10852-111F6;0.0539299!10853-111F7;0.157193!10854-111F8;0.829599!10855-111F9;0.44552!10856-111G1;0.497217!10847-111F1;0.26371!10846-111E9;0.572711!10848-111F2;0.0955583!10845-111E8;0.459284!10857-111G2;0.84461!10858-111G3;0.924981!10156-103A3;0.227506!11901-125F2;0.82542!11902-125F3;0.601189!11903-125F4;0.644669!10689-109F5;0.78054!10648-109A9;0.423702!10784-110H1;0.581156!10744-110C6;0.457885!10772-110F7;0.90682!10474-106I6;0.517411!10600-108E6;0.240631!10684-109E9;0.438501!12226-129F3;0.253043!12227-129F4;0.907194!10508-107D4;0.418701!10539-107G8;0.0343196!10607-108F4;0.0133578!10555-107I6;0.237372!10774-110F9;0.243528!10637-108I7;0.632741!10663-109C6;0.0519336!10728-110A8;0.118788!10729-110A9;0.358337!10430-106D7;0.619124!10730-110B1;0.749924!10813-111B3;0.0179199!10812-111B2;0.892248!10037-101F1;0.594628!10172-103C1;0.44596!10163-103B1;0.967172!10076-102A4;0.812045!10073-102A1;0.387068!10036-101E9;0.113378!10195-103E6;0.5494!10277-104E7;0.594261!10434-106E2;0.0984273!10550-107I1;0.965237!10545-107H5;0.602095!10544-107H4;0.771889!10704-109H2;0.841228!10510-107D6;0.626768!10558-107I9;0.713886!10020-101D2;0.552306!10732-110B3;0.376867!10049-101G4;0.897465!10698-109G5;0.66584!10437-106E5;0.409973!10417-106C3;0.266408!10035-101E8;0.684799!10171-103B9;0.504423!10157-103A4;0.556448!10034-101E7;0.805924!10072-101I9;0.465855!10199-103F1;0.14061!10200-103F2;0.727539!10697-109G4;0.862748!10723-110A3;0.173723!10179-103C8;0.326286!10160-103A7;0.427209!10180-103C9;0.364584!10162-103A9;0.63575!10021-101D3;0.710516!10840-111E3;0.788164!10706-109H4;0.380433!10033-101E6;0.548218!10032-101E5;0.683352!10490-107B4;0.54828!10439-106E7;0.935074!10022-101D4;0.222214!10176-103C5;0.627141!10469-106I1;0.678833!10067-101I4;0.346703!10411-106B6;0.555616!10471-106I3;0.468308!10030-101E3;0.207212!10475-106I7;0.346464!10787-110H4;0.435362!10477-106I9;0.621961!10695-109G2;0.415282!11771-123I7;0.852177!11772-123I8;0.358606!11773-123I9;0.94604!10093-102C3;0.837241!10442-106F1;0.996391!10442-106F1;0.542335!10201-103F3;0.456247!10639-108I9;0.814298!11843-124H7;0.706209!11841-124H5;0.949539!10693-109F9;0.97763!10436-106E4;0.760917!10483-107A6;0.32878!10282-104F3;0.919464!10023-101D5;0.820477!10066-101I3;0.748622!10065-101I2;0.973776!10800-110I8;0.603682!10610-108F7;0.285204!10841-111E4;0.0649785!10541-107H1;0.513379!10842-111E5;0.201512!10562-108A4;0.580595!10024-101D6;0.0426547!10064-101I1;0.133538!10609-108F6;0.538166!10048-101G3;0.0670188!10781-110G7;0.374617!10181-103D1;0.0439864!10159-103A6;0.712186!10056-101H2;0.730822!10737-110B8;0.266594!10025-101D7;0.896809!10044-101F8;0.530328!10424-106D1;0.627963!10463-106H4;0.15388!10616-108G4;0.594081!10486-107A9;0.927334!10062-101H8;0.493651!10202-103F4;0.470509!10158-103A5;0.434265!10441-106E9;0.428345!10031-101E4;0.0721405!10063-101H9;0.538022!10063-101H9;0.191355!11763-123H8;0.920398!11765-123I1;0.729741!11768-123I4;0.766623!10807-111A6;0.857709!10790-110H7;0.791163!10798-110I6;0.467609!10786-110H3;0.253434!10591-108D6;0.528738!10593-108D8;0.78993!10590-108D5;0.85436!10026-101D8;0.940004!10096-102C6;0.0180987!10168-103B6;0.118313!10154-103A1;0.711578!10209-103G2;0.614921!10061-101H7;0.973666!10027-101D9;0.41223!10043-101F7;0.462686!10783-110G9;0.626888!10028-101E1;0.591893!10060-101H6;0.500197!10203-103F5;0.279798!10059-101H5;0.969543!10047-101G2;0.481897!10029-101E2;0.451146!10058-101H4;0.803377!10418-106C4;0.692037!10492-107B6;0.419966!10694-109G1;0.965603!10797-110I5;0.911981!10057-101H3;0.917642!10100-102D1;0.828657!10055-101H1;0.514604!10204-103F6;0.453738!10191-103E2;0.87238!10563-108A5;0.81626
|name=SOX18_f1
|name=SOX18_f1
|tomtom_result=D#MA00445.1;-5;7.66241e-06;0.00364731;0.00594802;11;GGAAAAGAACAATGGGTTC;AGAACAATGGA;-!SOX9#MA0077.1;-6;1.26951e-05;0.00604288;0.00594802;9;GGAAAAGAACAATGGGTTC;GAACAATGG;+!SRY#MA0084.1;-4;3.42782e-05;0.0163164;0.00921693;9;GGAAAAGAACAATGGGTTC;GTAAACAAT;+!ROX1#MA0371.1;-4;3.93442e-05;0.0187279;0.00921693;12;GGAAAAGAACAATGGGTTC;GAGAACAATGGA;-!Sox5#MA0087.1;-6;0.000159547;0.0759444;0.0299009;7;GGAAAAGAACAATGGGTTC;AAACAAT;+!Sox17#MA0078.1;-7;0.00050187;0.23889;0.07838;9;GGAAAAGAACAATGGGTTC;GACAATGAG;-!HCM1#MA0317.1;-4;0.000912696;0.434443;0.122178;8;GGAAAAGAACAATGGGTTC;ATAAACAA;+!id1#MA0120.1;0;0.00139441;0.663739;0.148446;12;GGAAAAGAACAATGGGTTC;CGAAAAGGAAAA;-!SOX10#MA0442.1;-8;0.00142576;0.678663;0.148446;6;GGAAAAGAACAATGGGTTC;ACAAAG;-!br_Z1#MA0010.1;-1;0.00237772;1.13179;0.214324;14;GGAAAAGAACAATGGGTTC;GTAATAAACAAATC;+!FOXF2#MA0030.1;1;0.00251592;1.19758;0.214324;13;GGAAAAGAACAATGGGTTC;CAAACGTAAACAAT;+!Foxd3#MA0041.1;-2;0.00307459;1.46351;0.238583;12;GGAAAAGAACAATGGGTTC;AAACAAACATTC;-!STB3#MA0390.1;1;0.00330991;1.57552;0.238583;19;GGAAAAGAACAATGGGTTC;CCAGAGTGAAAAATTTTGGAC;-!slp1#MA0458.1;-1;0.00381958;1.81812;0.255654;11;GGAAAAGAACAATGGGTTC;AATGTAAACAA;-!MGA1#MA0336.1;3;0.00520795;2.47898;0.325343;18;GGAAAAGAACAATGGGTTC;AGGACTATAGAACACTCTAAA;+!SFL1#MA0377.1;3;0.0057476;2.73586;0.329311;18;GGAAAAGAACAATGGGTTC;TAGAGAATAGAAGAAATAAAA;+!FKH1#MA0296.1;2;0.00597433;2.84378;0.329311;18;GGAAAAGAACAATGGGTTC;TGAATTGTAAACAAAGAGGA;+!Pax4#MA0068.1;6;0.00685056;3.26087;0.356631;19;GGAAAAGAACAATGGGTTC;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!SFP1#MA0378.1;-2;0.00806774;3.84024;0.397891;17;GGAAAAGAACAATGGGTTC;CCGTAGAAAATTTTTTTCAAT;-!pan#MA0237.1;-6;0.00867995;4.13166;0.40668;8;GGAAAAGAACAATGGGTTC;GATCAAAG;-!Sox2#MA0143.1;0;0.00954967;4.54565;0.406754;15;GGAAAAGAACAATGGGTTC;TTTGCATAACAAAGG;-!En1#MA0027.1;-4;0.0112053;5.33371;0.442521;11;GGAAAAGAACAATGGGTTC;GAACACTACTT;-!Ar#MA0007.1;-2;0.0121909;5.80287;0.442521;17;GGAAAAGAACAATGGGTTC;ATAAGAACACCCTGTACCCGCC;+!Foxa2#MA0047.1;-2;0.0122784;5.84452;0.442521;12;GGAAAAGAACAATGGGTTC;AAGTAAATATTG;-!Foxq1#MA0040.1;-3;0.0140057;6.6667;0.464685;11;GGAAAAGAACAATGGGTTC;AATAAACAATA;-!SPT23#MA0388.1;-4;0.0142139;6.76579;0.464685;8;GGAAAAGAACAATGGGTTC;GAAATCAA;+!br_Z3#MA0012.1;-5;0.0147962;7.04297;0.464685;11;GGAAAAGAACAATGGGTTC;TAAACTAAAAG;+!NFYA#MA0060.1;-3;0.0150679;7.17231;0.464685;16;GGAAAAGAACAATGGGTTC;CTCAGCCAATCAGCGC;+!NRG1#MA0347.1;0;0.0153729;7.31748;0.464685;19;GGAAAAGAACAATGGGTTC;TGCGATGGACCCTGATCTAG;-!NR3C1#MA0113.1;-4;0.017902;8.52137;0.511269;15;GGAAAAGAACAATGGGTTC;GGGAACATTATGTCCTAT;+!MATA1#MA0327.1;-6;0.0180052;8.57047;0.511269;7;GGAAAAGAACAATGGGTTC;ACACAAT;+!HMG-1#MA0044.1;-4;0.0187504;8.92521;0.516771;9;GGAAAAGAACAATGGGTTC;GAATACAAC;-
}}
}}

Latest revision as of 14:22, 7 September 2012

Full Name: SOX18_f1

Motif matrix
POACGT
10.52054794520547920.52054794520547926.438356164383560.5205479452054792
21.9726027397260240.9863013698630165.041095890410960.0
35.041095890410960.9863013698630161.9726027397260240.0
43.0684931506849282.958904109589040.9863013698630160.986301369863016
53.0684931506849280.9863013698630162.958904109589040.986301369863016
65.041095890410960.00.9863013698630161.972602739726024
72.082191780821921.9726027397260242.958904109589040.986301369863016
84.9315068493150720.02.082191780821920.986301369863016
96.0273972602739760.00.01.972602739726024
100.08.00.00.0
118.00.00.00.0
128.00.00.00.0
132.958904109589040.00.05.04109589041096
140.00.9863013698630163.9452054794520563.068493150684928
150.9863013698630161.9726027397260243.0684931506849281.972602739726024
161.9726027397260240.9863013698630162.958904109589042.08219178082192
172.958904109589040.9863013698630160.04.054794520547944
181.9726027397260240.02.958904109589043.068493150684928
190.24657534246575364.3013698630136962.2191780821917841.232876712328768

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
D#MA00445.1-57.66241e-060.003647310.0059480211GGAAAAGAACAATGGGTTCAGAACAATGGA-
SOX9#MA0077.1-61.26951e-050.006042880.005948029GGAAAAGAACAATGGGTTCGAACAATGG+
SRY#MA0084.1-43.42782e-050.01631640.009216939GGAAAAGAACAATGGGTTCGTAAACAAT+
ROX1#MA0371.1-43.93442e-050.01872790.0092169312GGAAAAGAACAATGGGTTCGAGAACAATGGA-
Sox5#MA0087.1-60.0001595470.07594440.02990097GGAAAAGAACAATGGGTTCAAACAAT+
Sox17#MA0078.1-70.000501870.238890.078389GGAAAAGAACAATGGGTTCGACAATGAG-
HCM1#MA0317.1-40.0009126960.4344430.1221788GGAAAAGAACAATGGGTTCATAAACAA+
id1#MA0120.100.001394410.6637390.14844612GGAAAAGAACAATGGGTTCCGAAAAGGAAAA-
SOX10#MA0442.1-80.001425760.6786630.1484466GGAAAAGAACAATGGGTTCACAAAG-
br_Z1#MA0010.1-10.002377721.131790.21432414GGAAAAGAACAATGGGTTCGTAATAAACAAATC+
FOXF2#MA0030.110.002515921.197580.21432413GGAAAAGAACAATGGGTTCCAAACGTAAACAAT+
Foxd3#MA0041.1-20.003074591.463510.23858312GGAAAAGAACAATGGGTTCAAACAAACATTC-
STB3#MA0390.110.003309911.575520.23858319GGAAAAGAACAATGGGTTCCCAGAGTGAAAAATTTTGGAC-
slp1#MA0458.1-10.003819581.818120.25565411GGAAAAGAACAATGGGTTCAATGTAAACAA-
MGA1#MA0336.130.005207952.478980.32534318GGAAAAGAACAATGGGTTCAGGACTATAGAACACTCTAAA+
SFL1#MA0377.130.00574762.735860.32931118GGAAAAGAACAATGGGTTCTAGAGAATAGAAGAAATAAAA+
FKH1#MA0296.120.005974332.843780.32931118GGAAAAGAACAATGGGTTCTGAATTGTAAACAAAGAGGA+
Pax4#MA0068.160.006850563.260870.35663119GGAAAAGAACAATGGGTTCGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
SFP1#MA0378.1-20.008067743.840240.39789117GGAAAAGAACAATGGGTTCCCGTAGAAAATTTTTTTCAAT-
pan#MA0237.1-60.008679954.131660.406688GGAAAAGAACAATGGGTTCGATCAAAG-
Sox2#MA0143.100.009549674.545650.40675415GGAAAAGAACAATGGGTTCTTTGCATAACAAAGG-
En1#MA0027.1-40.01120535.333710.44252111GGAAAAGAACAATGGGTTCGAACACTACTT-
Ar#MA0007.1-20.01219095.802870.44252117GGAAAAGAACAATGGGTTCATAAGAACACCCTGTACCCGCC+
Foxa2#MA0047.1-20.01227845.844520.44252112GGAAAAGAACAATGGGTTCAAGTAAATATTG-
Foxq1#MA0040.1-30.01400576.66670.46468511GGAAAAGAACAATGGGTTCAATAAACAATA-
SPT23#MA0388.1-40.01421396.765790.4646858GGAAAAGAACAATGGGTTCGAAATCAA+
br_Z3#MA0012.1-50.01479627.042970.46468511GGAAAAGAACAATGGGTTCTAAACTAAAAG+
NFYA#MA0060.1-30.01506797.172310.46468516GGAAAAGAACAATGGGTTCCTCAGCCAATCAGCGC+
NRG1#MA0347.100.01537297.317480.46468519GGAAAAGAACAATGGGTTCTGCGATGGACCCTGATCTAG-
NR3C1#MA0113.1-40.0179028.521370.51126915GGAAAAGAACAATGGGTTCGGGAACATTATGTCCTAT+
MATA1#MA0327.1-60.01800528.570470.5112697GGAAAAGAACAATGGGTTCACACAAT+
HMG-1#MA0044.1-40.01875048.925210.5167719GGAAAAGAACAATGGGTTCGAATACAAC-
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