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MacroAPE 1083:PBX3 GM12878-PBX3-ChIP-Seq/Homer: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;193;514;488;137!2;144;976;155;57!3;56;68;1;1207!4;13;1;1317;1!5;1;268;1;1062!6;1;1329;1;1!7;1217;67;1;47!8;555;505;240;32!9;1;1;1;1329!10;1;...")
 
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998395!10464-106H5;0.470185!10827-111C8;0.351567!10789-110H6;0.179397!10828-111C9;0.276517!10788-110H5;0.333145!10792-110H9;0.130573!10765-110E9;0.79262!10829-111D1;0.23911!10830-111D2;0.00722939!10831-111D3;0.0212052!10832-111D4;0.259409!10833-111D5;0.206829!10764-110E8;0.150207!10770-110F5;0.0709864!10399-106A3;0.0941911!10400-106A4;0.126625!10405-106A9;0.188047!10834-111D6;0.240156!10835-111D7;0.00665704!10836-111D8;0.330645!10837-111D9;0.531639!10699-109G6;0.600188!10802-111A1;0.904886!10796-110I4;0.733038!10010-101C1;0.174142!10810-111A9;0.761562!10421-106C7;0.66307!10708-109H6;0.21821!12235-129G3;0.425763!12236-129G4;0.205696!12237-129G5;0.12569!10167-103B5;0.140641!10151-102I7;0.00621441!10428-106D5;0.000456156!10795-110I3;0.467221!10805-111A4;7.1535e-06!10052-101G7;0.115609!10189-103D9;0.172164!10589-108D4;0.838664!10425-106D2;0.80296!10427-106D4;0.250416!10702-109G9;0.180702!10432-106D9;0.101852!10496-107C1;0.135236!10718-109I7;0.0731752!10011-101C2;0.214364!10053-101G8;0.0559248!10686-109F2;0.338114!10084-102B3;0.599399!10012-101C3;0.132788!10085-102B4;0.0283459!10482-107A5;0.0980221!10419-106C5;0.264956!10080-102A8;0.0280671!10760-110E4;0.308283!10709-109H7;0.0148736!10710-109H8;0.465955!10703-109H1;0.0956834!10719-109I8;0.0725671!10642-109A3;0.38093!10177-103C6;0.0812176!10164-103B2;0.0246525!10173-103C2;0.00265473!10166-103B4;0.000161895!10083-102B2;1.0114e-06!10188-103D8;0.000816558!10552-107I3;0.0612325!10553-107I4;0.130612!10013-101C4;0.1865!10536-107G5;0.00546792!10618-108G6;0.210862!10423-106C9;0.659364!10785-110H2;0.869933!12238-129G6;0.941146!12239-129G7;0.112221!12240-129G8;0.721304!10416-106C2;0.45785!10801-110I9;0.272366!10766-110F1;0.00673909!10824-111C5;0.0817293!10825-111C6;0.353283!10826-111C7;0.362612!10454-106G4;0.431877!10409-106B4;0.247676!10638-108I8;0.403777!10636-108I6;0.047195!10513-107D9;0.353718!10420-106C6;0.679145!10082-102B1;0.161777!10014-101C5;0.624038!10070-101I7;0.432609!10452-106G2;0.514403!10453-106G3;0.258946!10449-106F8;0.771631!10042-101F6;0.878907!10069-101I6;0.00294394!10193-103E4;0.0158177!10631-108I1;0.0453217!10438-106E6;0.388909!10488-107B2;0.00758619!10196-103E7;0.0557557!10071-101I8;0.00494804!10071-101I8;0.270197!10041-101F5;0.00665878!10451-106G1;0.148033!10450-106F9;0.0202845!10604-108F1;0.0777383!10605-108F2;0.00793556!10606-108F3;7.60822e-05!10603-108E9;0.00589433!10497-107C2;0.000902138!10448-106F7;0.0769562!10643-109A4;0.585541!10426-106D3;0.404208!10431-106D8;0.136227!10197-103E8;0.11257!10443-106F2;0.056989!10815-111B5;0.775018!10816-111B6;0.188769!10817-111B7;0.349585!10015-101C6;0.122987!10410-106B5;0.0764947!10054-101G9;0.201632!10758-110E2;0.000828741!10711-109H9;0.0261149!10040-101F4;0.0800252!10470-106I2;0.0258915!10415-106C1;0.0599909!10198-103E9;0.0285305!10614-108G2;0.442242!10612-108F9;0.724987!10549-107H9;0.202811!10615-108G3;0.469886!10487-107B1;0.126418!10433-106E1;0.0136106!10688-109F4;0.455426!10444-106F3;0.606057!10444-106F3;0.283685!10485-107A8;0.356317!10413-106B8;0.395011!10175-103C4;0.54233!10161-103A8;0.00511301!12131-128D7;2.90287e-05!10624-108H3;0.848739!10712-109I1;0.195508!10205-103F7;0.0795734!10206-103F8;0.056038!10207-103F9;0.0123244!10050-101G5;0.784252!10051-101G6;0.194528!10016-101C7;0.12271!10046-101G1;0.249687!10778-110G4;0.00443061!10633-108I3;0.330329!10818-111B8;0.231042!10819-111B9;0.298039!10820-111C1;0.33301!10484-107A7;0.298572!10808-111A7;0.65316!10169-103B7;0.166246!10153-102I9;0.00817599!13425-144D5;0.000188336!13433-144E4;0.00115415!13437-144E8;0.00281249!11904-125F5;0.000800012!11905-125F6;0.580093!10039-101F3;0.940317!10791-110H8;0.0611637!10017-101C8;0.553151!10045-101F9;0.154638!10509-107D5;0.00082228!10839-111E2;0.674367!10692-109F8;3.70455e-06!10079-102A7;0.71276!10078-102A6;0.0616922!10721-110A1;0.707379!10569-108B2;0.18052!10570-108B3;0.105772!10571-108B4;0.717727!10647-109A8;0.404983!10752-110D5;0.866851!10782-110G8;0.482996!10726-110A6;0.537593!10018-101C9;0.888606!10086-102B5;0.474182!10182-103D2;0.441345!10165-103B3;0.00684931!10499-107C4;0.000469107!10408-106B3;0.000301929!10019-101D1;0.249244!10068-101I5;0.632602!10075-102A3;0.0687931!10077-102A5;0.649299!10727-110A7;0.00268882!10775-110G1;0.508774!10412-106B7;0.291376!12231-129F8;0.586863!12232-129F9;0.0274697!12233-129G1;0.247578!12234-129G2;0.259975!10414-106B9;0.180034!10170-103B8;0.458622!10183-103D3;0.00758434!10150-102I6;0.0133776!10174-103C3;0.00348704!10155-103A2;0.00303534!10038-101F2;0.000161287!10838-111E1;0.0274465!10759-110E3;0.0037066!10514-107E1;0.433592!10465-106H6;0.720848!10691-109F7;0.271897!10843-111E6;0.0022924!10844-111E7;0.0936644!11747-123G1;0.00428582!11748-123G2;0.0153169!11749-123G3;0.0425716!11750-123G4;0.062143!11751-123G5;0.39577!11840-124H4;0.122408!11752-123G6;0.944114!11753-123G7;0.033168!11754-123G8;0.0634903!11755-123G9;0.273208!11756-123H1;0.160098!11833-124G6;0.253431!11760-123H5;0.0268727!11836-124G9;0.0929744!11758-123H3;0.377975!11835-124G8;0.128221!11762-123H7;0.183337!11838-124H2;0.455286!11757-123H2;0.539073!11759-123H4;0.496666!11761-123H6;0.0691828!11842-124H6;0.234537!11837-124H1;0.756509!10568-108B1;0.592176!13230-141I8;0.45656!13231-141I9;0.337553!10696-109G3;0.409251!10493-107B7;0.276481!10494-107B8;0.101148!10850-111F4;0.233464!10851-111F5;0.0984503!10852-111F6;0.457734!10853-111F7;0.934826!10854-111F8;0.703471!10855-111F9;0.710679!10856-111G1;0.596409!10847-111F1;0.485487!10846-111E9;0.838487!10848-111F2;0.0540554!10845-111E8;0.679168!10857-111G2;0.193496!10858-111G3;0.374974!10156-103A3;0.148291!11901-125F2;0.000744665!11902-125F3;0.920369!11903-125F4;0.275955!10689-109F5;0.389141!10648-109A9;0.375351!10784-110H1;0.401285!10744-110C6;0.00701626!10772-110F7;0.0256057!10474-106I6;0.466247!10600-108E6;0.929385!10684-109E9;0.630775!12226-129F3;0.528304!12227-129F4;0.915686!10508-107D4;0.605139!10539-107G8;0.167201!10607-108F4;0.0920609!10555-107I6;0.533847!10774-110F9;0.153673!10637-108I7;0.361677!10663-109C6;0.589283!10728-110A8;0.601171!10729-110A9;0.0201192!10430-106D7;0.0072251!10730-110B1;0.00237991!10813-111B3;0.469592!10812-111B2;0.391905!10037-101F1;0.319075!10172-103C1;0.0299164!10163-103B1;0.0086066!10076-102A4;0.000383637!10073-102A1;0.071298!10036-101E9;0.00581311!10195-103E6;0.0742718!10277-104E7;0.0116755!10434-106E2;0.0248442!10550-107I1;0.39435!10545-107H5;0.827218!10544-107H4;0.315713!10704-109H2;0.000900894!10510-107D6;0.588!10558-107I9;0.0579581!10020-101D2;0.0907756!10732-110B3;0.0997329!10049-101G4;0.781672!10698-109G5;0.498408!10437-106E5;0.907578!10417-106C3;0.573949!10035-101E8;0.36191!10171-103B9;0.0458728!10157-103A4;0.00816395!10034-101E7;0.00337257!10072-101I9;0.0344218!10199-103F1;0.00681196!10200-103F2;0.0113537!10697-109G4;0.0131872!10723-110A3;0.0615799!10179-103C8;0.371832!10160-103A7;0.00722398!10180-103C9;0.00368519!10162-103A9;0.001411!10021-101D3;0.000248664!10840-111E3;0.703544!10706-109H4;0.317778!10033-101E6;0.929646!10032-101E5;0.0163967!10490-107B4;0.0489785!10439-106E7;0.62722!10022-101D4;0.640556!10176-103C5;0.00443527!10469-106I1;0.00120723!10067-101I4;0.867195!10411-106B6;0.144154!10471-106I3;0.738832!10030-101E3;0.150867!10475-106I7;0.002033!10787-110H4;0.146452!10477-106I9;0.214436!10695-109G2;0.0262675!11771-123I7;0.137473!11772-123I8;0.492463!11773-123I9;0.0866925!10093-102C3;0.0040074!10442-106F1;0.0569148!10442-106F1;0.326779!10201-103F3;0.789986!10639-108I9;0.0285411!11843-124H7;0.0179803!11841-124H5;0.106921!10693-109F9;0.65684!10436-106E4;0.978471!10483-107A6;0.528402!10282-104F3;0.184256!10023-101D5;0.0179016!10066-101I3;0.0144556!10065-101I2;0.00354309!10800-110I8;0.000520129!10610-108F7;0.275839!10841-111E4;0.0619949!10541-107H1;0.638915!10842-111E5;0.718974!10562-108A4;0.0144201!10024-101D6;0.152264!10064-101I1;0.756069!10609-108F6;0.24081!10048-101G3;0.127195!10781-110G7;0.00660603!10181-103D1;0.73712!10159-103A6;0.000731254!10056-101H2;0.00130342!10737-110B8;0.00435523!10025-101D7;0.0478204!10044-101F8;0.215868!10424-106D1;0.273959!10463-106H4;0.164748!10616-108G4;0.0292213!10486-107A9;0.0181239!10062-101H8;0.658316!10202-103F4;0.121032!10158-103A5;0.00939081!10441-106E9;0.000577423!10031-101E4;0.33234!10063-101H9;0.0633624!10063-101H9;0.0212841!11763-123H8;0.227591!11765-123I1;0.5801!11768-123I4;0.623893!10807-111A6;0.417088!10790-110H7;0.081734!10798-110I6;6.61396e-05!10786-110H3;0.00568302!10591-108D6;0.0825237!10593-108D8;0.0818724!10590-108D5;0.320822!10026-101D8;0.168917!10096-102C6;0.000978316!10168-103B6;4.88163e-05!10154-103A1;0.000974763!10209-103G2;0.000157127!10061-101H7;0.0454097!10027-101D9;0.00066717!10043-101F7;0.21496!10783-110G9;0.00253105!10028-101E1;0.517167!10060-101H6;0.0162033!10203-103F5;0.00200479!10059-101H5;0.0938314!10047-101G2;0.00376987!10029-101E2;0.411043!10058-101H4;0.388981!10418-106C4;0.0279817!10492-107B6;0.790558!10694-109G1;0.0246506!10797-110I5;0.874577!10057-101H3;0.0983225!10100-102D1;0.0193664!10055-101H1;0.122103!10204-103F6;0.0236192!10191-103E2;0.0588265!10563-108A5;0.924527
|name=PBX3_GM12878-PBX3-ChIP-Seq/Homer
|name=PBX3_GM12878-PBX3-ChIP-Seq/Homer
|tomtom_result=achi#MA0207.1;-1;1.47924e-05;0.00704119;0.010282;6;CCTGTCAATCAA;CTGTCA;-!vis#MA0252.1;-1;2.66034e-05;0.0126632;0.010282;6;CCTGTCAATCAA;CTGTCA;-!hth#MA0227.1;-1;3.25124e-05;0.0154759;0.010282;6;CCTGTCAATCAA;CTGTCA;-!TOS8#MA0408.1;-1;0.000801334;0.381435;0.190065;8;CCTGTCAATCAA;CTGTCAAA;+!PBX1#MA0070.1;-1;0.00163738;0.779393;0.310691;11;CCTGTCAATCAA;CCATCAATCAAA;+!z#MA0255.1;-2;0.00202674;0.964729;0.320476;10;CCTGTCAATCAA;AATCACTCAA;-!YPR013C#MA0434.1;-2;0.00240826;1.14633;0.326404;9;CCTGTCAATCAA;TGTAGATCA;+!Fos#MA0099.1;-3;0.00337096;1.60458;0.399772;8;CCTGTCAATCAA;GTGAGTCA;+!FZF1#MA0298.1;-1;0.0076084;3.6216;0.7331;6;CCTGTCAATCAA;CTATCA;+!Pax2#MA0067.1;-2;0.00793314;3.77618;0.7331;8;CCTGTCAATCAA;AGTCACGG;+!AP1#MA0099.2;-4;0.00849977;4.04589;0.7331;7;CCTGTCAATCAA;TGACTCA;+!NFYA#MA0060.1;1;0.0109404;5.20763;0.801292;12;CCTGTCAATCAA;CTCAGCCAATCAGCGC;+!GCN4#MA0303.1;3;0.0115159;5.48156;0.801292;12;CCTGTCAATCAA;TGAAGTATGACTCATCCCTTG;-!RXR::RAR_DR5#MA0159.1;3;0.0118241;5.62829;0.801292;12;CCTGTCAATCAA;TGACCTCTCCGTGACCT;-!Nkx3-2#MA0122.1;-3;0.0145368;6.9195;0.891002;9;CCTGTCAATCAA;TCCACTTAA;-!exd#MA0222.1;-2;0.0150262;7.15248;0.891002;8;CCTGTCAATCAA;TGTCAAAA;-!ARG81#MA0272.1;-3;0.019034;9.0602;0.950444;8;CCTGTCAATCAA;GTGACTCT;+!Six4#MA0204.1;-1;0.0201969;9.61373;0.958085;6;CCTGTCAATCAA;GTATCA;-
}}
}}

Latest revision as of 14:26, 7 September 2012

Full Name: PBX3_GM12878-PBX3-ChIP-Seq/Homer

Motif matrix
POACGT
1193514488137
214497615557
3566811207
413113171
5126811062
61132911
7121767147
855550524032
91111329
101132731
111172471112
12418353297264

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
achi#MA0207.1-11.47924e-050.007041190.0102826CCTGTCAATCAACTGTCA-
vis#MA0252.1-12.66034e-050.01266320.0102826CCTGTCAATCAACTGTCA-
hth#MA0227.1-13.25124e-050.01547590.0102826CCTGTCAATCAACTGTCA-
TOS8#MA0408.1-10.0008013340.3814350.1900658CCTGTCAATCAACTGTCAAA+
PBX1#MA0070.1-10.001637380.7793930.31069111CCTGTCAATCAACCATCAATCAAA+
z#MA0255.1-20.002026740.9647290.32047610CCTGTCAATCAAAATCACTCAA-
YPR013C#MA0434.1-20.002408261.146330.3264049CCTGTCAATCAATGTAGATCA+
Fos#MA0099.1-30.003370961.604580.3997728CCTGTCAATCAAGTGAGTCA+
FZF1#MA0298.1-10.00760843.62160.73316CCTGTCAATCAACTATCA+
Pax2#MA0067.1-20.007933143.776180.73318CCTGTCAATCAAAGTCACGG+
AP1#MA0099.2-40.008499774.045890.73317CCTGTCAATCAATGACTCA+
NFYA#MA0060.110.01094045.207630.80129212CCTGTCAATCAACTCAGCCAATCAGCGC+
GCN4#MA0303.130.01151595.481560.80129212CCTGTCAATCAATGAAGTATGACTCATCCCTTG-
RXR::RAR_DR5#MA0159.130.01182415.628290.80129212CCTGTCAATCAATGACCTCTCCGTGACCT-
Nkx3-2#MA0122.1-30.01453686.91950.8910029CCTGTCAATCAATCCACTTAA-
exd#MA0222.1-20.01502627.152480.8910028CCTGTCAATCAATGTCAAAA-
ARG81#MA0272.1-30.0190349.06020.9504448CCTGTCAATCAAGTGACTCT+
Six4#MA0204.1-10.02019699.613730.9580856CCTGTCAATCAAGTATCA-
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:PBX3_GM12878-PBX3-ChIP-Seq/Homer&oldid=2134362"