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MacroAPE 1083:9-TATCCGMH: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;138.645;24.174;0.711;547.47!2;531.828;0.711;0.711;177.75!3;159.264;0.711;0.711;550.314!4;24.174;685.404;0.711;0.711!5;158.553;377.541;15.642...")
 
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10H6;0.356812!10828-111C9;0.280303!10788-110H5;0.407486!10792-110H9;0.573479!10765-110E9;0.463976!10829-111D1;0.904325!10830-111D2;0.881753!10831-111D3;0.194883!10832-111D4;0.331829!10833-111D5;0.695175!10764-110E8;0.977052!10770-110F5;0.993239!10399-106A3;0.96268!10400-106A4;0.691201!10405-106A9;0.712541!10834-111D6;0.705945!10835-111D7;0.962457!10836-111D8;0.410189!10837-111D9;0.429496!10699-109G6;0.0883794!10802-111A1;0.0692668!10796-110I4;0.31655!10010-101C1;0.940584!10810-111A9;0.875461!10421-106C7;0.846447!10708-109H6;0.581586!12235-129G3;0.520414!12236-129G4;0.104898!12237-129G5;0.0672242!10167-103B5;0.0579629!10151-102I7;0.342912!10428-106D5;0.319723!10795-110I3;0.049461!10805-111A4;0.474531!10052-101G7;0.538512!10189-103D9;0.489328!10589-108D4;0.766058!10425-106D2;0.224287!10427-106D4;0.0655668!10702-109G9;0.543528!10432-106D9;0.647813!10496-107C1;0.109204!10718-109I7;0.509308!10011-101C2;0.514059!10053-101G8;0.452863!10686-109F2;0.446861!10084-102B3;0.0663327!10012-101C3;0.179317!10085-102B4;0.3295!10482-107A5;0.439776!10419-106C5;0.944183!10080-102A8;0.831286!10760-110E4;0.556519!10709-109H7;0.592696!10710-109H8;0.858106!10703-109H1;0.687593!10719-109I8;0.600311!10642-109A3;0.584916!10177-103C6;0.489123!10164-103B2;0.287102!10173-103C2;0.310513!10166-103B4;0.823774!10083-102B2;0.696123!10188-103D8;0.416912!10552-107I3;0.452277!10553-107I4;0.465755!10013-101C4;0.282027!10536-107G5;0.551606!10618-108G6;0.820507!10423-106C9;0.705603!10785-110H2;0.794747!12238-129G6;0.466285!12239-129G7;0.136066!12240-129G8;0.131478!10416-106C2;0.207295!10801-110I9;0.799202!10766-110F1;0.130712!10824-111C5;0.336532!10825-111C6;0.624839!10826-111C7;0.52248!10454-106G4;0.486162!10409-106B4;0.531446!10638-108I8;0.181363!10636-108I6;0.912652!10513-107D9;0.713448!10420-106C6;0.97714!10082-102B1;0.895804!10014-101C5;0.359959!10070-101I7;0.387125!10452-106G2;0.683143!10453-106G3;0.219066!10449-106F8;0.214509!10042-101F6;0.234484!10069-101I6;0.281699!10193-103E4;0.892734!10631-108I1;0.300252!10438-106E6;0.939981!10488-107B2;0.232355!10196-103E7;0.818498!10071-101I8;0.317619!10071-101I8;0.692625!10041-101F5;0.92852!10451-106G1;0.845955!10450-106F9;0.443692!10604-108F1;0.419288!10605-108F2;0.0312655!10606-108F3;0.0334813!10603-108E9;0.0195327!10497-107C2;0.00788179!10448-106F7;0.325237!10643-109A4;0.409368!10426-106D3;0.188915!10431-106D8;0.804452!10197-103E8;0.323722!10443-106F2;0.605721!10815-111B5;0.0261846!10816-111B6;0.604066!10817-111B7;0.521913!10015-101C6;0.623129!10410-106B5;0.558158!10054-101G9;0.994704!10758-110E2;0.575346!10711-109H9;0.0238271!10040-101F4;0.0251774!10470-106I2;0.328896!10415-106C1;0.845283!10198-103E9;0.937632!10614-108G2;0.330702!10612-108F9;0.484755!10549-107H9;0.649275!10615-108G3;0.560415!10487-107B1;0.472352!10433-106E1;0.230174!10688-109F4;0.021774!10444-106F3;0.541728!10444-106F3;0.218421!10485-107A8;0.243525!10413-106B8;0.337107!10175-103C4;0.701062!10161-103A8;0.274605!12131-128D7;0.314909!10624-108H3;0.981031!10712-109I1;0.467066!10205-103F7;0.569585!10206-103F8;0.680223!10207-103F9;0.635589!10050-101G5;0.602299!10051-101G6;0.482725!10016-101C7;0.546049!10046-101G1;0.774616!10778-110G4;0.995657!10633-108I3;0.696206!10818-111B8;0.302754!10819-111B9;0.96286!10820-111C1;0.919406!10484-107A7;0.971229!10808-111A7;0.19544!10169-103B7;0.299167!10153-102I9;0.314396!13425-144D5;0.358441!13433-144E4;0.682882!13437-144E8;0.888006!11904-125F5;0.721211!11905-125F6;0.449536!10039-101F3;0.829629!10791-110H8;0.308804!10017-101C8;0.999515!10045-101F9;0.34708!10509-107D5;0.932819!10839-111E2;0.00377573!10692-109F8;0.356061!10079-102A7;0.0363232!10078-102A6;0.813281!10721-110A1;0.424476!10569-108B2;0.650866!10570-108B3;0.115967!10571-108B4;0.0857926!10647-109A8;0.164092!10752-110D5;0.002486!10782-110G8;0.175572!10726-110A6;0.621608!10018-101C9;0.37147!10086-102B5;0.176889!10182-103D2;0.736481!10165-103B3;0.33519!10499-107C4;0.398055!10408-106B3;0.956243!10019-101D1;0.597387!10068-101I5;0.453664!10075-102A3;0.835317!10077-102A5;0.362582!10727-110A7;0.901681!10775-110G1;0.426084!10412-106B7;0.835019!12231-129F8;0.028114!12232-129F9;0.292207!12233-129G1;0.341472!12234-129G2;0.317873!10414-106B9;0.25498!10170-103B8;0.701464!10183-103D3;0.388203!10150-102I6;0.300977!10174-103C3;0.396744!10155-103A2;0.299727!10038-101F2;0.429746!10838-111E1;0.390449!10759-110E3;0.669269!10514-107E1;0.233676!10465-106H6;0.955891!10691-109F7;0.684339!10843-111E6;0.0808997!10844-111E7;0.612949!11747-123G1;0.69168!11748-123G2;0.818639!11749-123G3;0.607718!11750-123G4;0.747978!11751-123G5;0.46962!11840-124H4;0.470207!11752-123G6;0.367021!11753-123G7;0.674273!11754-123G8;0.505282!11755-123G9;0.901566!11756-123H1;0.18136!11833-124G6;0.320519!11760-123H5;0.31787!11836-124G9;0.523465!11758-123H3;0.355155!11835-124G8;0.826349!11762-123H7;0.743441!11838-124H2;0.51898!11757-123H2;0.377973!11759-123H4;0.503797!11761-123H6;0.594472!11842-124H6;0.757709!11837-124H1;0.401007!10568-108B1;0.554225!13230-141I8;0.185489!13231-141I9;0.689552!10696-109G3;0.642335!10493-107B7;0.10024!10494-107B8;0.992753!10850-111F4;0.655573!10851-111F5;0.643673!10852-111F6;0.692856!10853-111F7;0.0945637!10854-111F8;0.290215!10855-111F9;0.991595!10856-111G1;0.0466287!10847-111F1;0.196364!10846-111E9;0.2418!10848-111F2;0.950511!10845-111E8;0.688214!10857-111G2;0.951052!10858-111G3;0.750959!10156-103A3;0.82455!11901-125F2;0.358057!11902-125F3;0.909069!11903-125F4;0.8664!10689-109F5;0.994236!10648-109A9;0.438567!10784-110H1;0.908105!10744-110C6;0.345094!10772-110F7;0.550956!10474-106I6;0.831631!10600-108E6;0.961758!10684-109E9;0.0993546!12226-129F3;0.645697!12227-129F4;0.9423!10508-107D4;0.907864!10539-107G8;0.500455!10607-108F4;0.550243!10555-107I6;0.548431!10774-110F9;0.803641!10637-108I7;0.543612!10663-109C6;0.292118!10728-110A8;0.115272!10729-110A9;0.87526!10430-106D7;0.943312!10730-110B1;0.582967!10813-111B3;0.407516!10812-111B2;0.512945!10037-101F1;0.0333486!10172-103C1;0.313699!10163-103B1;0.331559!10076-102A4;0.352321!10073-102A1;0.302462!10036-101E9;0.847449!10195-103E6;0.248499!10277-104E7;0.397307!10434-106E2;0.227083!10550-107I1;0.931631!10545-107H5;0.921068!10544-107H4;0.748362!10704-109H2;0.223836!10510-107D6;0.419476!10558-107I9;0.00354292!10020-101D2;0.261105!10732-110B3;0.307974!10049-101G4;0.357591!10698-109G5;0.282544!10437-106E5;0.628636!10417-106C3;0.424618!10035-101E8;0.451926!10171-103B9;0.32276!10157-103A4;0.274042!10034-101E7;0.36537!10072-101I9;0.315619!10199-103F1;0.833237!10200-103F2;0.364405!10697-109G4;0.705699!10723-110A3;0.896095!10179-103C8;0.782397!10160-103A7;0.328905!10180-103C9;0.34585!10162-103A9;0.180273!10021-101D3;0.311972!10840-111E3;0.568573!10706-109H4;0.383501!10033-101E6;0.900946!10032-101E5;0.200805!10490-107B4;0.277854!10439-106E7;0.890273!10022-101D4;0.707875!10176-103C5;0.416317!10469-106I1;0.264505!10067-101I4;0.119163!10411-106B6;0.837931!10471-106I3;0.269978!10030-101E3;0.406272!10475-106I7;0.347504!10787-110H4;0.505782!10477-106I9;0.846683!10695-109G2;0.0710739!11771-123I7;0.774262!11772-123I8;0.6276!11773-123I9;0.292388!10093-102C3;0.581649!10442-106F1;0.436818!10442-106F1;0.0303275!10201-103F3;0.0343558!10639-108I9;0.294657!11843-124H7;0.52394!11841-124H5;0.584171!10693-109F9;0.388467!10436-106E4;0.62154!10483-107A6;0.491129!10282-104F3;0.793038!10023-101D5;0.67936!10066-101I3;0.966445!10065-101I2;0.981025!10800-110I8;0.950252!10610-108F7;0.645476!10841-111E4;0.273868!10541-107H1;0.814669!10842-111E5;0.674387!10562-108A4;0.751788!10024-101D6;0.601669!10064-101I1;0.250695!10609-108F6;0.402082!10048-101G3;0.638105!10781-110G7;0.33016!10181-103D1;0.78156!10159-103A6;0.486926!10056-101H2;0.391157!10737-110B8;0.655172!10025-101D7;0.81922!10044-101F8;0.844635!10424-106D1;0.937068!10463-106H4;0.416078!10616-108G4;0.493597!10486-107A9;0.0816952!10062-101H8;0.463507!10202-103F4;0.982605!10158-103A5;0.857719!10441-106E9;0.193609!10031-101E4;0.0117464!10063-101H9;0.281802!10063-101H9;0.881219!11763-123H8;0.650785!11765-123I1;0.379591!11768-123I4;0.574051!10807-111A6;0.393586!10790-110H7;0.538469!10798-110I6;0.945446!10786-110H3;0.048287!10591-108D6;0.776871!10593-108D8;0.783964!10590-108D5;0.210578!10026-101D8;0.465151!10096-102C6;0.137862!10168-103B6;0.33374!10154-103A1;0.365868!10209-103G2;0.258318!10061-101H7;0.810207!10027-101D9;0.992968!10043-101F7;0.623418!10783-110G9;0.848076!10028-101E1;0.190309!10060-101H6;0.439175!10203-103F5;0.737418!10059-101H5;0.628791!10047-101G2;0.815801!10029-101E2;0.969526!10058-101H4;0.707745!10418-106C4;0.698331!10492-107B6;0.178214!10694-109G1;0.581123!10797-110I5;0.857357!10057-101H3;0.517911!10100-102D1;0.62729!10055-101H1;0.566239!10204-103F6;0.711186!10191-103E2;0.849912!10563-108A5;0.850254
|name=9-TATCCGMH,CNhs12592,BestGuess:GATA4_f1_HM09(0.743624209455324),T:711.0(21.51%),B:5961.7(13.21%),P:1e-38
|name=9-TATCCGMH,CNhs12592,BestGuess:GATA4_f1_HM09(0.743624209455324),T:711.0(21.51%),B:5961.7(13.21%),P:1e-38
|tomtom_result=RGT1#MA0367.1;4;0.00229317;1.09155;0.640364;7;TATCCGAC;AATTTTTCCGG;+!ETS1#MA0098.1;0;0.00279693;1.33134;0.640364;6;TATCCGAC;CTTCCG;+!YRR1#MA0439.1;4;0.00325542;1.54958;0.640364;7;TATCCGAC;CTTATCTCCGC;+!Tal1::Gata1#MA0140.1;2;0.00370988;1.76591;0.640364;8;TATCCGAC;CTTATCTGTCCCCACCAG;-!GATA2#MA0036.1;0;0.00398493;1.89683;0.640364;5;TATCCGAC;TATCC;-!YRM1#MA0438.1;1;0.00575746;2.74055;0.640364;7;TATCCGAC;ATTTCCGT;-!YNR063W#MA0432.1;1;0.00649062;3.08954;0.640364;7;TATCCGAC;ATCTCCGA;-!EDS1#MA0294.1;3;0.00789267;3.75691;0.640364;6;TATCCGAC;ATTTTTCCG;-!GAT1#MA0300.1;2;0.00920682;4.38245;0.640364;6;TATCCGAC;CTTATCGG;-!YPR196W#MA0437.1;3;0.00996095;4.74141;0.640364;6;TATCCGAC;ATTTCTCCG;+!Gata1#MA0035.2;4;0.0101876;4.84931;0.640364;7;TATCCGAC;TTCTTATCTGT;-!Gamyb#MA0034.1;2;0.0106227;5.05642;0.640364;8;TATCCGAC;GACAACCGCC;+!ASG1#MA0275.1;-1;0.0110511;5.26033;0.640364;6;TATCCGAC;TTCCGG;-!YDR520C#MA0422.1;3;0.0112528;5.35634;0.640364;7;TATCCGAC;TTATCTCCGG;-!CHA4#MA0283.1;0;0.0121783;5.79687;0.640364;8;TATCCGAC;TCTCCGCC;-!HAP1#MA0312.1;2;0.0128634;6.12297;0.640364;6;TATCCGAC;TATCTCCG;-!myb.Ph3#MA0054.1;0;0.0132069;6.28648;0.640364;8;TATCCGAC;TAACCGTTT;+!ovo#MA0126.1;2;0.0132069;6.28648;0.640364;7;TATCCGAC;AGTAACAGT;+!prd#MA0239.1;2;0.0132069;6.28648;0.640364;7;TATCCGAC;AGTAACAGT;+!Spz1#MA0111.1;4;0.0136253;6.48566;0.640364;7;TATCCGAC;AGGGTAACAGC;+!RDR1#MA0360.1;0;0.0143376;6.82468;0.640364;8;TATCCGAC;GTTCCGCA;-!ELK1#MA0028.1;0;0.0149212;7.10248;0.640364;8;TATCCGAC;CTTCCGGCTC;-!YKL222C#MA0428.1;1;0.0192682;9.17165;0.752272;8;TATCCGAC;ATTTCCGTT;-!HAL9#MA0311.1;-1;0.0205818;9.79696;0.752272;5;TATCCGAC;TTCCG;-!CEP3#MA0282.1;0;0.0209333;9.96425;0.752272;8;TATCCGAC;TTTCCGAG;-!PDR8#MA0354.1;1;0.0209333;9.96425;0.752272;7;TATCCGAC;ATCTCCGT;-
}}
}}

Latest revision as of 14:34, 7 September 2012

Full Name: 9-TATCCGMH,CNhs12592,BestGuess:GATA4_f1_HM09(0.743624209455324),T:711.0(21.51%),B:5961.7(13.21%),P:1e-38

Motif matrix
POACGT
1138.64524.1740.711547.47
2531.8280.7110.711177.75
3159.2640.7110.711550.314
424.174685.4040.7110.711
5158.553377.54115.642159.264
60.7110.711708.8670.711
7271.602255.96112.33870.389
8204.768278.71241.949185.571

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RGT1#MA0367.140.002293171.091550.6403647TATCCGACAATTTTTCCGG+
ETS1#MA0098.100.002796931.331340.6403646TATCCGACCTTCCG+
YRR1#MA0439.140.003255421.549580.6403647TATCCGACCTTATCTCCGC+
Tal1::Gata1#MA0140.120.003709881.765910.6403648TATCCGACCTTATCTGTCCCCACCAG-
GATA2#MA0036.100.003984931.896830.6403645TATCCGACTATCC-
YRM1#MA0438.110.005757462.740550.6403647TATCCGACATTTCCGT-
YNR063W#MA0432.110.006490623.089540.6403647TATCCGACATCTCCGA-
EDS1#MA0294.130.007892673.756910.6403646TATCCGACATTTTTCCG-
GAT1#MA0300.120.009206824.382450.6403646TATCCGACCTTATCGG-
YPR196W#MA0437.130.009960954.741410.6403646TATCCGACATTTCTCCG+
Gata1#MA0035.240.01018764.849310.6403647TATCCGACTTCTTATCTGT-
Gamyb#MA0034.120.01062275.056420.6403648TATCCGACGACAACCGCC+
ASG1#MA0275.1-10.01105115.260330.6403646TATCCGACTTCCGG-
YDR520C#MA0422.130.01125285.356340.6403647TATCCGACTTATCTCCGG-
CHA4#MA0283.100.01217835.796870.6403648TATCCGACTCTCCGCC-
HAP1#MA0312.120.01286346.122970.6403646TATCCGACTATCTCCG-
myb.Ph3#MA0054.100.01320696.286480.6403648TATCCGACTAACCGTTT+
ovo#MA0126.120.01320696.286480.6403647TATCCGACAGTAACAGT+
prd#MA0239.120.01320696.286480.6403647TATCCGACAGTAACAGT+
Spz1#MA0111.140.01362536.485660.6403647TATCCGACAGGGTAACAGC+
RDR1#MA0360.100.01433766.824680.6403648TATCCGACGTTCCGCA-
ELK1#MA0028.100.01492127.102480.6403648TATCCGACCTTCCGGCTC-
YKL222C#MA0428.110.01926829.171650.7522728TATCCGACATTTCCGTT-
HAL9#MA0311.1-10.02058189.796960.7522725TATCCGACTTCCG-
CEP3#MA0282.100.02093339.964250.7522728TATCCGACTTTCCGAG-
PDR8#MA0354.110.02093339.964250.7522727TATCCGACATCTCCGT-
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