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MacroAPE 1083:CNhs11986 bl f2: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;175.2249947646019;54.47045673966278;118.20858242204928;52.212754296858684!2;64.97594597159892;27.181224008210208;186.77868168337613;121.1809...")
 
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!10828-111C9;0.560256!10788-110H5;0.751108!10792-110H9;0.53041!10765-110E9;0.59517!10829-111D1;0.509295!10830-111D2;0.611011!10831-111D3;0.501526!10832-111D4;0.46387!10833-111D5;0.372348!10764-110E8;0.802903!10770-110F5;0.562689!10399-106A3;0.516131!10400-106A4;0.822492!10405-106A9;0.954536!10834-111D6;0.956178!10835-111D7;0.651723!10836-111D8;0.655169!10837-111D9;0.231503!10699-109G6;0.909746!10802-111A1;0.20757!10796-110I4;0.694524!10010-101C1;0.385667!10810-111A9;0.72796!10421-106C7;0.0378196!10708-109H6;0.865465!12235-129G3;0.840561!12236-129G4;0.745324!12237-129G5;0.260165!10167-103B5;0.869006!10151-102I7;0.483168!10428-106D5;0.889897!10795-110I3;0.238284!10805-111A4;0.335113!10052-101G7;0.253196!10189-103D9;0.700942!10589-108D4;0.79879!10425-106D2;0.816291!10427-106D4;0.0059712!10702-109G9;0.401837!10432-106D9;0.345323!10496-107C1;0.151491!10718-109I7;0.255073!10011-101C2;0.891574!10053-101G8;0.880876!10686-109F2;0.283808!10084-102B3;0.644282!10012-101C3;0.447954!10085-102B4;0.678036!10482-107A5;0.658863!10419-106C5;0.452039!10080-102A8;0.610677!10760-110E4;0.61768!10709-109H7;0.485133!10710-109H8;0.779577!10703-109H1;0.934661!10719-109I8;0.743467!10642-109A3;0.897407!10177-103C6;0.887784!10164-103B2;0.72245!10173-103C2;0.653483!10166-103B4;0.977431!10083-102B2;0.974545!10188-103D8;0.980089!10552-107I3;0.400622!10553-107I4;0.369098!10013-101C4;0.350275!10536-107G5;0.684593!10618-108G6;0.42754!10423-106C9;0.189807!10785-110H2;0.17632!12238-129G6;0.685294!12239-129G7;0.834106!12240-129G8;0.360703!10416-106C2;0.739759!10801-110I9;0.598887!10766-110F1;0.5933!10824-111C5;0.819328!10825-111C6;0.844809!10826-111C7;0.75526!10454-106G4;0.655726!10409-106B4;0.87309!10638-108I8;0.767739!10636-108I6;0.553713!10513-107D9;0.797352!10420-106C6;0.320507!10082-102B1;0.742863!10014-101C5;0.489619!10070-101I7;0.937949!10452-106G2;0.642465!10453-106G3;0.711758!10449-106F8;0.351064!10042-101F6;0.324274!10069-101I6;0.575278!10193-103E4;0.218285!10631-108I1;0.953969!10438-106E6;0.305892!10488-107B2;0.766734!10196-103E7;0.677982!10071-101I8;0.905463!10071-101I8;0.510607!10041-101F5;0.778966!10451-106G1;0.194015!10450-106F9;0.925278!10604-108F1;0.227658!10605-108F2;0.154623!10606-108F3;0.121207!10603-108E9;0.303159!10497-107C2;0.107449!10448-106F7;0.333536!10643-109A4;0.01574!10426-106D3;0.201485!10431-106D8;0.682424!10197-103E8;0.220961!10443-106F2;0.92862!10815-111B5;0.325729!10816-111B6;0.57513!10817-111B7;0.360441!10015-101C6;0.498836!10410-106B5;0.476147!10054-101G9;0.39877!10758-110E2;0.942947!10711-109H9;0.546871!10040-101F4;0.0817388!10470-106I2;0.738012!10415-106C1;0.732663!10198-103E9;0.689175!10614-108G2;0.206172!10612-108F9;0.67342!10549-107H9;0.398534!10615-108G3;0.0781338!10487-107B1;0.775749!10433-106E1;0.782809!10688-109F4;0.734316!10444-106F3;0.76475!10444-106F3;0.987018!10485-107A8;0.915211!10413-106B8;0.246358!10175-103C4;0.905923!10161-103A8;0.882038!12131-128D7;0.658203!10624-108H3;0.675118!10712-109I1;0.990942!10205-103F7;0.376047!10206-103F8;0.887479!10207-103F9;0.634197!10050-101G5;0.519316!10051-101G6;0.0806481!10016-101C7;0.282404!10046-101G1;0.37689!10778-110G4;0.147046!10633-108I3;0.417409!10818-111B8;0.936203!10819-111B9;0.551002!10820-111C1;0.580721!10484-107A7;0.563312!10808-111A7;0.901543!10169-103B7;0.529703!10153-102I9;0.838559!13425-144D5;0.914378!13433-144E4;0.352534!13437-144E8;0.321761!11904-125F5;0.389775!11905-125F6;0.473158!10039-101F3;0.919987!10791-110H8;0.789015!10017-101C8;0.293218!10045-101F9;0.938223!10509-107D5;0.243351!10839-111E2;0.510221!10692-109F8;0.207727!10079-102A7;0.0229365!10078-102A6;0.995247!10721-110A1;0.982517!10569-108B2;0.640179!10570-108B3;0.371933!10571-108B4;0.55001!10647-109A8;0.414321!10752-110D5;0.466955!10782-110G8;0.833482!10726-110A6;0.90498!10018-101C9;0.5254!10086-102B5;0.0401206!10182-103D2;0.018393!10165-103B3;0.802433!10499-107C4;0.818472!10408-106B3;0.759645!10019-101D1;0.516139!10068-101I5;0.432399!10075-102A3;0.880343!10077-102A5;0.641411!10727-110A7;0.566558!10775-110G1;0.881822!10412-106B7;0.419116!12231-129F8;0.0981457!12232-129F9;0.478383!12233-129G1;0.701827!12234-129G2;0.285257!10414-106B9;0.900324!10170-103B8;0.979966!10183-103D3;0.805783!10150-102I6;0.696752!10174-103C3;0.633136!10155-103A2;0.921176!10038-101F2;0.894498!10838-111E1;0.844118!10759-110E3;0.770587!10514-107E1;0.0302156!10465-106H6;0.377988!10691-109F7;0.86174!10843-111E6;0.311134!10844-111E7;0.694465!11747-123G1;0.255703!11748-123G2;0.184194!11749-123G3;0.415996!11750-123G4;0.163535!11751-123G5;0.0601025!11840-124H4;0.241379!11752-123G6;0.123313!11753-123G7;0.404063!11754-123G8;0.375847!11755-123G9;0.250475!11756-123H1;0.693809!11833-124G6;0.407363!11760-123H5;0.20963!11836-124G9;0.687754!11758-123H3;0.748967!11835-124G8;0.907899!11762-123H7;0.951812!11838-124H2;0.984532!11757-123H2;0.831655!11759-123H4;0.341367!11761-123H6;0.931251!11842-124H6;0.980906!11837-124H1;0.281021!10568-108B1;0.444813!13230-141I8;0.98762!13231-141I9;0.195139!10696-109G3;0.0551727!10493-107B7;0.853114!10494-107B8;0.641881!10850-111F4;0.299082!10851-111F5;0.824896!10852-111F6;0.347815!10853-111F7;0.927938!10854-111F8;0.865621!10855-111F9;0.356529!10856-111G1;0.542032!10847-111F1;0.402872!10846-111E9;0.839891!10848-111F2;0.102254!10845-111E8;0.888601!10857-111G2;0.212258!10858-111G3;0.567697!10156-103A3;0.725142!11901-125F2;0.797491!11902-125F3;0.940359!11903-125F4;0.933686!10689-109F5;0.951697!10648-109A9;0.227899!10784-110H1;0.36883!10744-110C6;0.801715!10772-110F7;0.4038!10474-106I6;0.600325!10600-108E6;0.57008!10684-109E9;0.353908!12226-129F3;0.61732!12227-129F4;0.483998!10508-107D4;0.720255!10539-107G8;0.189602!10607-108F4;0.281481!10555-107I6;0.476554!10774-110F9;0.120966!10637-108I7;0.615139!10663-109C6;0.31477!10728-110A8;0.13605!10729-110A9;0.408054!10430-106D7;0.283882!10730-110B1;0.15532!10813-111B3;0.666022!10812-111B2;0.197089!10037-101F1;0.456279!10172-103C1;0.780495!10163-103B1;0.439796!10076-102A4;0.854519!10073-102A1;0.764208!10036-101E9;0.860266!10195-103E6;0.709554!10277-104E7;0.78672!10434-106E2;0.389336!10550-107I1;0.185933!10545-107H5;0.0640231!10544-107H4;0.469731!10704-109H2;0.665927!10510-107D6;0.176567!10558-107I9;0.352476!10020-101D2;0.245123!10732-110B3;0.618903!10049-101G4;0.970784!10698-109G5;0.0336416!10437-106E5;0.211031!10417-106C3;0.388837!10035-101E8;0.922689!10171-103B9;0.790326!10157-103A4;0.671209!10034-101E7;0.800559!10072-101I9;0.712763!10199-103F1;0.976602!10200-103F2;0.264501!10697-109G4;0.859943!10723-110A3;0.696664!10179-103C8;0.561835!10160-103A7;0.109517!10180-103C9;0.277013!10162-103A9;0.696845!10021-101D3;0.804962!10840-111E3;0.272987!10706-109H4;0.556454!10033-101E6;0.317048!10032-101E5;0.912179!10490-107B4;0.810707!10439-106E7;0.754132!10022-101D4;0.21837!10176-103C5;0.916876!10469-106I1;0.733579!10067-101I4;0.790115!10411-106B6;0.650925!10471-106I3;0.622122!10030-101E3;0.796104!10475-106I7;0.943208!10787-110H4;0.367133!10477-106I9;0.645629!10695-109G2;0.381353!11771-123I7;0.305824!11772-123I8;0.11391!11773-123I9;0.0482817!10093-102C3;0.00957368!10442-106F1;0.180903!10442-106F1;0.00032808!10201-103F3;0.000354816!10639-108I9;0.791473!11843-124H7;0.738745!11841-124H5;0.423757!10693-109F9;0.455053!10436-106E4;0.283004!10483-107A6;0.230566!10282-104F3;0.784109!10023-101D5;0.173891!10066-101I3;0.399789!10065-101I2;0.426483!10800-110I8;0.120477!10610-108F7;0.704045!10841-111E4;0.326877!10541-107H1;0.678851!10842-111E5;0.576917!10562-108A4;0.862945!10024-101D6;0.814039!10064-101I1;0.875306!10609-108F6;0.847534!10048-101G3;0.782441!10781-110G7;0.931551!10181-103D1;0.703969!10159-103A6;0.865771!10056-101H2;0.583675!10737-110B8;0.459877!10025-101D7;0.11135!10044-101F8;0.760492!10424-106D1;0.815362!10463-106H4;0.539676!10616-108G4;0.929771!10486-107A9;0.23348!10062-101H8;0.763176!10202-103F4;0.997755!10158-103A5;0.377697!10441-106E9;0.270525!10031-101E4;0.302999!10063-101H9;0.732711!10063-101H9;0.861706!11763-123H8;0.568359!11765-123I1;0.0664422!11768-123I4;0.143717!10807-111A6;0.1104!10790-110H7;0.0697322!10798-110I6;0.402394!10786-110H3;0.0897197!10591-108D6;0.157712!10593-108D8;0.0756956!10590-108D5;0.0143278!10026-101D8;0.406753!10096-102C6;0.578992!10168-103B6;0.757411!10154-103A1;0.601782!10209-103G2;0.632948!10061-101H7;0.0911516!10027-101D9;0.156651!10043-101F7;0.338569!10783-110G9;0.293777!10028-101E1;0.701263!10060-101H6;0.834121!10203-103F5;0.311614!10059-101H5;0.178017!10047-101G2;0.0729683!10029-101E2;0.181258!10058-101H4;0.927506!10418-106C4;0.741076!10492-107B6;0.073117!10694-109G1;0.852999!10797-110I5;0.347213!10057-101H3;0.769729!10100-102D1;0.342238!10055-101H1;0.74969!10204-103F6;0.824054!10191-103E2;0.938447!10563-108A5;0.477348
|name=CNhs11986_bl_f2
|name=CNhs11986_bl_f2
|tomtom_result=Sox5#MA0087.1;-5;0.000395004;0.188022;0.376044;7;AGTGAATTGTTT;ATTGTTA;-!SRY#MA0084.1;-5;0.00410316;1.95311;1;7;AGTGAATTGTTT;ATTGTTTAC;-!Sox17#MA0078.1;-2;0.00668626;3.18266;1;9;AGTGAATTGTTT;TTCATTGTC;+!SOX9#MA0077.1;-3;0.00895763;4.26383;1;9;AGTGAATTGTTT;CCATTGTTC;-!Ar#MA0007.1;9;0.0137008;6.52158;1;12;AGTGAATTGTTT;GGCGGGTACACGATGTTCTTAT;-!D#MA00445.1;-2;0.0166364;7.91893;1;10;AGTGAATTGTTT;TCCATTGTTCT;+!En1#MA0027.1;-3;0.0193447;9.20806;1;9;AGTGAATTGTTT;AAGTAGTGCCC;+!SOX10#MA0442.1;-4;0.0202741;9.65045;1;6;AGTGAATTGTTT;CTTTGT;+
}}
}}

Latest revision as of 14:40, 7 September 2012

Full Name: CNhs11986_bl_f2

Motif matrix
POACGT
1175.224994764601954.47045673966278118.2085824220492852.212754296858684
264.9759459715989227.181224008210208186.77868168337613121.18093655998744
317.4541559221688114.205897786661366127.8930347141809240.56369980016177
4100.1280337787000925.78052240373792254.2863577236658719.921874317068795
5232.37712932554282148.03637094582133.10531596561618716.59797198619249
6266.170408568465462.7253508636159314128.045808576843943.175220214247708
76.6911871282197792.5312594872724470.9651075317242706389.9292340759561
872.745209111854730.84612916672157731.2960239848102322325.22942595978617
944.857018425445524112.32846324507547239.03328425932593.898022293325864
104.08007676927970841.8783862290881478.48399834007182275.6743268847332
1174.5544895673942779.1036305931351155.841525698613836190.6171423640297
12143.9688863871165819.80979260946961472.55431608921864163.78379313736778

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Sox5#MA0087.1-50.0003950040.1880220.3760447AGTGAATTGTTTATTGTTA-
SRY#MA0084.1-50.004103161.9531117AGTGAATTGTTTATTGTTTAC-
Sox17#MA0078.1-20.006686263.1826619AGTGAATTGTTTTTCATTGTC+
SOX9#MA0077.1-30.008957634.2638319AGTGAATTGTTTCCATTGTTC-
Ar#MA0007.190.01370086.52158112AGTGAATTGTTTGGCGGGTACACGATGTTCTTAT-
D#MA00445.1-20.01663647.91893110AGTGAATTGTTTTCCATTGTTCT+
En1#MA0027.1-30.01934479.2080619AGTGAATTGTTTAAGTAGTGCCC+
SOX10#MA0442.1-40.02027419.6504516AGTGAATTGTTTCTTTGT+
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