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MCL coexpression mm9:1821: Difference between revisions

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{{MCL_coexpression_mm9
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response to virus;2.00988278817424e-05;16523,20928!GO:0009615;response to virus;0.000328280855401792;16523,20928!GO:0030016;myofibril;0.000408397016541515;16523,20928!GO:0043292;contractile fiber;0.000408397016541515;16523,20928!GO:0002252;immune effector process;0.00100996610105755;16523,20928!GO:0006813;potassium ion transport;0.00106603545026734;16523,20928!GO:0051707;response to other organism;0.00106603545026734;16523,20928!GO:0008281;sulfonylurea receptor activity;0.00127376321700542;20928!GO:0009607;response to biotic stimulus;0.00134835840381961;16523,20928!GO:0051704;multi-organism process;0.00150897533329926;16523,20928!GO:0015672;monovalent inorganic cation transport;0.00206850436949599;16523,20928!GO:0030001;metal ion transport;0.00351106052065641;16523,20928!GO:0006812;cation transport;0.00451411943905518;16523,20928!GO:0006955;immune response;0.00452726098036247;16523,20928!GO:0043330;response to exogenous dsRNA;0.00679172892170544;16523!GO:0032496;response to lipopolysaccharide;0.00684325210746579;16523!GO:0006952;defense response;0.00684325210746579;16523,20928!GO:0043331;response to dsRNA;0.00684325210746579;16523!GO:0006811;ion transport;0.00684325210746579;16523,20928!GO:0005242;inward rectifier potassium channel activity;0.00684325210746579;16523!GO:0002376;immune system process;0.00684325210746579;16523,20928!GO:0002237;response to molecule of bacterial origin;0.00787072130033666;16523!GO:0022857;transmembrane transporter activity;0.00829079077516544;16523,20928!GO:0030017;sarcomere;0.027972892642399;20928!GO:0044449;contractile fiber part;0.0280723008868013;20928!GO:0005249;voltage-gated potassium channel activity;0.0324568799444616;16523!GO:0030955;potassium ion binding;0.0368227624754739;16523!GO:0009617;response to bacterium;0.0368227624754739;16523!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0368227624754739;20928!GO:0043492;ATPase activity, coupled to movement of substances;0.0368227624754739;20928!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0368227624754739;20928!GO:0022843;voltage-gated cation channel activity;0.0368227624754739;16523!GO:0005267;potassium channel activity;0.0371370190148136;16523!GO:0015399;primary active transmembrane transporter activity;0.0371370190148136;20928!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0371370190148136;20928!GO:0006810;transport;0.0395526787937518;16523,20928!GO:0051234;establishment of localization;0.0405905787950468;16523,20928!GO:0022832;voltage-gated channel activity;0.0431074496125446;16523!GO:0005244;voltage-gated ion channel activity;0.0431074496125446;16523!GO:0007507;heart development;0.0431074496125446;16523!GO:0031420;alkali metal ion 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|gostat_on_MCL_coexpression=GO:0051607;defense response to virus;2.00988278817424e-05;16523,20928!GO:0009615;response to virus;0.000328280855401792;16523,20928!GO:0030016;myofibril;0.000408397016541515;16523,20928!GO:0043292;contractile fiber;0.000408397016541515;16523,20928!GO:0002252;immune effector process;0.00100996610105755;16523,20928!GO:0006813;potassium ion transport;0.00106603545026734;16523,20928!GO:0051707;response to other organism;0.00106603545026734;16523,20928!GO:0008281;sulfonylurea receptor activity;0.00127376321700542;20928!GO:0009607;response to biotic stimulus;0.00134835840381961;16523,20928!GO:0051704;multi-organism process;0.00150897533329926;16523,20928!GO:0015672;monovalent inorganic cation transport;0.00206850436949599;16523,20928!GO:0030001;metal ion transport;0.00351106052065641;16523,20928!GO:0006812;cation transport;0.00451411943905518;16523,20928!GO:0006955;immune response;0.00452726098036247;16523,20928!GO:0043330;response to exogenous dsRNA;0.00679172892170544;16523!GO:0032496;response to lipopolysaccharide;0.00684325210746579;16523!GO:0006952;defense response;0.00684325210746579;16523,20928!GO:0043331;response to dsRNA;0.00684325210746579;16523!GO:0006811;ion transport;0.00684325210746579;16523,20928!GO:0005242;inward rectifier potassium channel activity;0.00684325210746579;16523!GO:0002376;immune system process;0.00684325210746579;16523,20928!GO:0002237;response to molecule of bacterial origin;0.00787072130033666;16523!GO:0022857;transmembrane transporter activity;0.00829079077516544;16523,20928!GO:0030017;sarcomere;0.027972892642399;20928!GO:0044449;contractile fiber part;0.0280723008868013;20928!GO:0005249;voltage-gated potassium channel activity;0.0324568799444616;16523!GO:0030955;potassium ion binding;0.0368227624754739;16523!GO:0009617;response to bacterium;0.0368227624754739;16523!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0368227624754739;20928!GO:0043492;ATPase activity, coupled to movement of substances;0.0368227624754739;20928!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0368227624754739;20928!GO:0022843;voltage-gated cation channel activity;0.0368227624754739;16523!GO:0005267;potassium channel activity;0.0371370190148136;16523!GO:0015399;primary active transmembrane transporter activity;0.0371370190148136;20928!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0371370190148136;20928!GO:0006810;transport;0.0395526787937518;16523,20928!GO:0051234;establishment of localization;0.0405905787950468;16523,20928!GO:0022832;voltage-gated channel activity;0.0431074496125446;16523!GO:0005244;voltage-gated ion channel activity;0.0431074496125446;16523!GO:0007507;heart development;0.0431074496125446;16523!GO:0031420;alkali metal ion binding;0.0437793322540531;16523!GO:0051179;localization;0.0455715798683656;16523,20928!
}}

Latest revision as of 17:33, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr6:142519811..142519817,-p5@Kcnj8
Mm9::chr6:142519823..142519873,-p1@Kcnj8
Mm9::chr6:142520018..142520047,-p2@Kcnj8
Mm9::chr6:142650819..142650839,-p4@Abcc9
Mm9::chr6:142650844..142650892,-p3@Abcc9


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0051607defense response to virus2.00988278817424e-05
GO:0009615response to virus0.000328280855401792
GO:0030016myofibril0.000408397016541515
GO:0043292contractile fiber0.000408397016541515
GO:0002252immune effector process0.00100996610105755
GO:0006813potassium ion transport0.00106603545026734
GO:0051707response to other organism0.00106603545026734
GO:0008281sulfonylurea receptor activity0.00127376321700542
GO:0009607response to biotic stimulus0.00134835840381961
GO:0051704multi-organism process0.00150897533329926
GO:0015672monovalent inorganic cation transport0.00206850436949599
GO:0030001metal ion transport0.00351106052065641
GO:0006812cation transport0.00451411943905518
GO:0006955immune response0.00452726098036247
GO:0043330response to exogenous dsRNA0.00679172892170544
GO:0032496response to lipopolysaccharide0.00684325210746579
GO:0006952defense response0.00684325210746579
GO:0043331response to dsRNA0.00684325210746579
GO:0006811ion transport0.00684325210746579
GO:0005242inward rectifier potassium channel activity0.00684325210746579
GO:0002376immune system process0.00684325210746579
GO:0002237response to molecule of bacterial origin0.00787072130033666
GO:0022857transmembrane transporter activity0.00829079077516544
GO:0030017sarcomere0.027972892642399
GO:0044449contractile fiber part0.0280723008868013
GO:0005249voltage-gated potassium channel activity0.0324568799444616
GO:0030955potassium ion binding0.0368227624754739
GO:0009617response to bacterium0.0368227624754739
GO:0042626ATPase activity, coupled to transmembrane movement of substances0.0368227624754739
GO:0043492ATPase activity, coupled to movement of substances0.0368227624754739
GO:0016820hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances0.0368227624754739
GO:0022843voltage-gated cation channel activity0.0368227624754739
GO:0005267potassium channel activity0.0371370190148136
GO:0015399primary active transmembrane transporter activity0.0371370190148136
GO:0015405P-P-bond-hydrolysis-driven transmembrane transporter activity0.0371370190148136
GO:0006810transport0.0395526787937518
GO:0051234establishment of localization0.0405905787950468
GO:0022832voltage-gated channel activity0.0431074496125446
GO:0005244voltage-gated ion channel activity0.0431074496125446
GO:0007507heart development0.0431074496125446
GO:0031420alkali metal ion binding0.0437793322540531
GO:0051179localization0.0455715798683656



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
multi-cellular organism1.53e-10333
stomach5.04e-0716
food storage organ5.04e-0716
trunk region element9.10e-0779


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.6678
MA0004.10.603793
MA0006.11.07705
MA0007.10.587678
MA0009.11.06266
MA0014.11.13011
MA0017.10.449113
MA0019.10.874061
MA0024.11.01759
MA0025.11.30092
MA0027.12.72141
MA0028.10.43138
MA0029.10.995171
MA0030.11.00195
MA0031.10.965177
MA0038.10.757669
MA0040.11.07552
MA0041.10.522007
MA0042.10.507715
MA0043.11.1618
MA0046.11.09955
MA0048.11.7574
MA0050.11.55615
MA0051.13.01999
MA0052.11.08379
MA0055.13.36884
MA0056.10
MA0057.12.39011
MA0058.10.50032
MA0059.10.513699
MA0060.10.330907
MA0061.10.364227
MA0063.10
MA0066.10.746072
MA0067.11.41352
MA0068.10.573319
MA0069.11.08414
MA0070.11.07418
MA0071.10.644448
MA0072.11.06547
MA0073.11.13827
MA0074.10.708108
MA0076.10.470037
MA0077.11.04318
MA0078.10.801834
MA0081.10.53877
MA0083.11.16099
MA0084.11.74401
MA0087.11.11687
MA0088.11.42769
MA0089.10
MA0090.10.566938
MA0091.10.617887
MA0092.10.567278
MA0093.10.440484
MA0095.10
MA0098.10
MA0100.10.695835
MA0101.10.523409
MA0103.10.460936
MA0105.11.98468
MA0106.10.809991
MA0107.10.454197
MA0108.20.897859
MA0109.10
MA0111.11.4237
MA0113.13.06168
MA0114.10.361633
MA0115.11.16466
MA0116.10.419688
MA0117.11.13165
MA0119.10.524046
MA0122.11.15196
MA0124.11.35963
MA0125.11.28445
MA0130.10
MA0131.10.869325
MA0132.10
MA0133.10
MA0135.11.19898
MA0136.10.729175
MA0139.11.45902
MA0140.10.695713
MA0141.10.482463
MA0142.10.950155
MA0143.10.797553
MA0144.10.365053
MA0145.11.48363
MA0146.10.21827
MA0147.10.986917
MA0148.10.621195
MA0149.10.529387
MA0062.20.254018
MA0035.20.700704
MA0039.21.42062
MA0138.20.861035
MA0002.20.809945
MA0137.20.479301
MA0104.20.315156
MA0047.20.75686
MA0112.20.157681
MA0065.20.477991
MA0150.10.587557
MA0151.10
MA0152.10.756973
MA0153.11.21594
MA0154.10.203217
MA0155.11.57585
MA0156.10.469089
MA0157.10.91689
MA0158.10
MA0159.14.73802
MA0160.10.624415
MA0161.10
MA0162.10.245828
MA0163.11.29282
MA0164.10.729558
MA0080.20.455167
MA0018.20.739807
MA0099.20.854449
MA0079.23.77735
MA0102.21.79669
MA0258.10.346619
MA0259.10.366802
MA0442.10
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:1821&oldid=3073820"