MCL coexpression mm9:1972: Difference between revisions
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{{MCL_coexpression_mm9 | 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part;0.00139034920464052;66493,22272,67126!GO:0044455;mitochondrial membrane part;0.00155129181801757;22272,67126!GO:0015078;hydrogen ion transmembrane transporter activity;0.0044695623510328;22272,67126!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.0044695623510328;22272,67126!GO:0022890;inorganic cation transmembrane transporter activity;0.00693727815077478;22272,67126!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0128646546783533;67126!GO:0044444;cytoplasmic part;0.0134689523553146;66493,22272,67126,230075!GO:0005743;mitochondrial inner membrane;0.0134941987268441;22272,67126!GO:0019866;organelle inner membrane;0.0134941987268441;22272,67126!GO:0031966;mitochondrial membrane;0.0134941987268441;22272,67126!GO:0005740;mitochondrial envelope;0.0138508279464587;22272,67126!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0138508279464587;67126!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.0150038303946409;67126!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0177202870675471;22272!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0177202870675471;22272!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0177202870675471;22272!GO:0031975;envelope;0.0177202870675471;22272,67126!GO:0031967;organelle envelope;0.0177202870675471;22272,67126!GO:0006091;generation of precursor metabolites and energy;0.0199794080386367;22272,67126!GO:0008324;cation transmembrane transporter activity;0.0235762164430165;22272,67126!GO:0045259;proton-transporting ATP synthase complex;0.0245295343418053;67126!GO:0031090;organelle membrane;0.0273003996548574;22272,67126!GO:0008553;hydrogen-exporting ATPase activity, phosphorylative mechanism;0.0273003996548574;67126!GO:0005746;mitochondrial respiratory chain;0.0273003996548574;22272!GO:0015075;ion transmembrane transporter activity;0.0273003996548574;22272,67126!GO:0015985;energy coupled proton transport, down electrochemical gradient;0.0273003996548574;67126!GO:0015986;ATP synthesis coupled proton transport;0.0273003996548574;67126!GO:0044446;intracellular organelle part;0.0273003996548574;66493,22272,67126!GO:0005737;cytoplasm;0.0273003996548574;66493,22272,67126,230075!GO:0044422;organelle part;0.0273003996548574;66493,22272,67126!GO:0006754;ATP biosynthetic process;0.0273003996548574;67126!GO:0006753;nucleoside phosphate metabolic process;0.0273003996548574;67126!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;0.0273003996548574;67126!GO:0016469;proton-transporting two-sector ATPase complex;0.0273003996548574;67126!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;0.0273003996548574;67126!GO:0022891;substrate-specific transmembrane transporter activity;0.0273003996548574;22272,67126!GO:0000313;organellar ribosome;0.0273003996548574;66493!GO:0046034;ATP metabolic process;0.0273003996548574;67126!GO:0005761;mitochondrial ribosome;0.0273003996548574;66493!GO:0016491;oxidoreductase activity;0.0273003996548574;22272,230075!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.0273003996548574;67126!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.0273003996548574;67126!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.0273003996548574;67126!GO:0050136;NADH dehydrogenase (quinone) activity;0.0273003996548574;230075!GO:0008137;NADH dehydrogenase (ubiquinone) activity;0.0273003996548574;230075!GO:0003954;NADH dehydrogenase activity;0.0273003996548574;230075!GO:0019829;cation-transporting ATPase activity;0.0273003996548574;67126!GO:0009142;nucleoside triphosphate biosynthetic process;0.0273003996548574;67126!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.0273003996548574;67126!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;0.0273003996548574;230075!GO:0009199;ribonucleoside triphosphate metabolic process;0.0273003996548574;67126!GO:0006119;oxidative phosphorylation;0.0273003996548574;67126!GO:0009144;purine nucleoside triphosphate metabolic process;0.0273003996548574;67126!GO:0031980;mitochondrial lumen;0.0273003996548574;66493!GO:0015992;proton transport;0.0273003996548574;67126!GO:0005759;mitochondrial matrix;0.0273003996548574;66493!GO:0022857;transmembrane transporter activity;0.0273003996548574;22272,67126!GO:0006752;group transfer coenzyme metabolic process;0.0273003996548574;67126!GO:0044249;cellular biosynthetic process;0.0273003996548574;66493,67126!GO:0009141;nucleoside triphosphate metabolic process;0.0274130749186557;67126!GO:0009152;purine ribonucleotide biosynthetic process;0.0274130749186557;67126!GO:0006818;hydrogen transport;0.0274130749186557;67126!GO:0015662;ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;0.0274130749186557;67126!GO:0009260;ribonucleotide biosynthetic process;0.0274130749186557;67126!GO:0043231;intracellular membrane-bound organelle;0.0274130749186557;66493,22272,67126,230075!GO:0043227;membrane-bound organelle;0.0274130749186557;66493,22272,67126,230075!GO:0022892;substrate-specific transporter activity;0.0277030697338808;22272,67126!GO:0009150;purine ribonucleotide metabolic process;0.0277030697338808;67126!GO:0006164;purine nucleotide biosynthetic process;0.0277317077783534;67126!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;0.0277594701017158;230075!GO:0009259;ribonucleotide metabolic process;0.0290233988590009;67126!GO:0006163;purine nucleotide metabolic process;0.0302516260249248;67126!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0326469894789926;67126!GO:0009108;coenzyme biosynthetic process;0.0330016178530571;67126!GO:0051188;cofactor biosynthetic process;0.0376280457883119;67126!GO:0009058;biosynthetic process;0.0381003043476087;66493,67126!GO:0043229;intracellular organelle;0.0381807149439813;66493,22272,67126,230075!GO:0043226;organelle;0.0381807149439813;66493,22272,67126,230075!GO:0043492;ATPase activity, coupled to movement of substances;0.0420710765210653;67126!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0420710765210653;67126!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0420710765210653;67126!GO:0009165;nucleotide biosynthetic process;0.0436924945731703;67126!GO:0015399;primary active transmembrane transporter activity;0.0447405944058265;67126!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0447405944058265;67126!GO:0009055;electron carrier 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|coexpression_dpi_cluster_scores_median=0.0199798093713817,0.60634081349327,0.676341990259659,0.525447536549332,0.555067731065213,0.386598232091084,0.406707737389654,-0.331624826459051,-0.199311108484432,-0.114995074398603,0.110102121491738,0.0632109054917562,-0.281520195256399,-0.436389395398664,-0.0308929334340987,-0.0936724213605966,-0.032910722997046,-0.215140731557021,-0.268520218357494,-0.143423737253817,0.0175796965158522,-0.0360616931345546,0.0305531150039401,0.439140814900238,0.505110742239879,0.870852310060891,0.800350113886817,0.59560725822667,0.625279019566817,0.709383517796238,0.625749904366726,0.0968914064378668,0.0102297622323779,-0.426302895530967,0.444027006603505,0.579750777112877,0.499535378827307,-0.00267482563860545,0.216459971954108,0.0111021331510135,0.0590947482298469,0.113685397292459,0.0755707315073107,0.0337769278041245,0.079415526405394,0.095580349990342,0.200681843786863,0.307260191010584,0.159082535006738,0.232001549234062,0.0999247859875762,0.253158245231416,-0.260077688886463,-0.356045656757687,-0.518668173075324,-0.0873391199112258,-0.118154814772806,0.0615568991326894,-0.0966227543087765,-0.0789151806709316,-0.062428404557638,0.273759894591005,0.0915310060544311,0.0666212955665026,0.146345274101181,0.122709703930969,0.243340386914184,0.308927111974572,-0.334931769428204,-0.275378339143237,-0.232608040354981,0.192763555972083,0.164306194146401,-0.233226781252455,-0.303357807781514,-0.286110178297966,-0.0273576964868046,-0.0648543712104171,-0.0411312152549114,-0.168892652464533,-0.182122793055686,-0.0799103646260884,0.224818393025855,0.136945781871311,-0.00804720331403795,-0.0604999034210289,-0.064022265261139,-0.070173487299641,0.0126796782260381,-0.158521719999982,-0.176151664568522,0.682867664791583,0.37737784095251,0.571204046329185,0.54173572488826,0.462029472979928,0.424418099955609,-0.0756019006133462,0.109031755592946,0.0974527623365765,0.0816702134001884,-0.0879118784237343,-0.540833294480876,-0.569378048852214,0.26217727358833,0.18369873628597,0.232647769994255,0.42427281080248,-0.424846990235823,-0.117060063572485,0.0699886066861579,0.146172976010803,0.133345017280009,0.183596281879918,-0.126408237532921,0.27472622224776,-0.275435922665088,0.359809806682458,-0.135279069864044,0.0418117406975685,0.0333480474448578,0.0874725351257082,0.0895291048224656,-0.224702281072605,-0.135780955505304,0.214968143536931,0.195801079980302,0.395755658648931,0.213398631665555,-0.088761447539171,-0.14866934392605,-0.332948436726654,-0.168648093077557,-0.13227459121744,-0.0446141598335459,-0.0386184796269148,-0.296916233315404,-0.0783393834196781,0.00884555903113825,-0.127545185247766,-0.127004053338529,-0.0202315493987929,-0.247049126439151,-0.175789081378661,-0.386347485078067,-0.241683056225829,-0.195795700679934,-0.133479731976933,-0.195310253841999,-0.381437313801268,-0.275022198131443,-0.159012735174996,-0.233256437446798,-0.215324666351351,-0.23858745159654,-0.120246890898811,0.264110708042033,0.266358922596944,0.129932484945956,0.0931935084550859,0.123474530133245,0.278230032053932,0.0779019394516147,0.274415940834594,0.31393440371821,0.375485033885131,0.45535497183944,0.359583119727282,0.372687781949976,0.546840982052453,0.486608288986564,0.670053178377308,0.613194401099478,0.633271567266704,-0.179653747676875,-0.369545988335372,0.351448944516763,0.292981891222497,-0.109245895616075,-0.106140477074712,-0.118067940773591,-0.0357697180730751,0.0911981013889274,0.202618865761667,0.244289960870788,0.251664365291079,0.208356937857405,0.1021475936029,0.131278966471469,0.146871576562049,0.300826085428033,0.240911767954806,0.0338068459980054,-0.0384131576857962,-0.134569580995005,0.0447729302460458,0.0239633766276205,-0.116600388767876,-0.00405779615964445,0.213265425840384,0.329126739458574,0.368311143281258,0.437263203369456,-0.0863035807536861,-0.078819965286033,-0.102738284719842,-0.0921608313138159,-0.00836896939671475,0.208790579985055,0.153923189195531,0.139610610282451,0.412860102614741,-0.049996151928975,0.220800366830828,0.323833411064983,0.381525699410411,0.391307499564231,0.404648410602,-0.353181034990843,0.0340183086731718,-0.190781773880016,-0.091386293852596,-0.0974193967900921,-0.26733631901229,-0.267481746994559,-0.263055290346628,-0.269585684846209,-0.335655505992258,-0.397639907175336,-0.23003753122689,-0.208196886050683,-0.262417648327282,-0.218149858838368,0.0063446402757226,0.107222692555602,-0.0895324892028329,0.0366040239946529,0.0288436317209177,-0.11211595682646,0.453527191994457,-0.0229231339415176,-0.0219236558890314,-0.224154520832019,-0.135750862649686,-0.178981272298375,-0.341348505226871,-0.181228780625739,-0.0155268935590909,-0.113433784320038,-0.303364367774236,-0.291430210654219,-0.139792566309295,-0.250801294309203,-0.387036525384475,0.0423114686409094,0.032358224017795,0.145458357999001,0.109946932891703,0.0731045104200608,0.103680166565905,-0.0925653761534671,-0.0324437894852113,-0.00694225364890735,0.095720922150987,0.252472544795161,0.157334128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| |||
|gostat_on_MCL_coexpression=GO:0005739;mitochondrion;0.000878702121549544;66493,22272,67126,230075!GO:0044429;mitochondrial part;0.00139034920464052;66493,22272,67126!GO:0044455;mitochondrial membrane part;0.00155129181801757;22272,67126!GO:0015078;hydrogen ion transmembrane transporter activity;0.0044695623510328;22272,67126!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.0044695623510328;22272,67126!GO:0022890;inorganic cation transmembrane transporter activity;0.00693727815077478;22272,67126!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0128646546783533;67126!GO:0044444;cytoplasmic part;0.0134689523553146;66493,22272,67126,230075!GO:0005743;mitochondrial inner membrane;0.0134941987268441;22272,67126!GO:0019866;organelle inner membrane;0.0134941987268441;22272,67126!GO:0031966;mitochondrial membrane;0.0134941987268441;22272,67126!GO:0005740;mitochondrial envelope;0.0138508279464587;22272,67126!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0138508279464587;67126!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.0150038303946409;67126!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0177202870675471;22272!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0177202870675471;22272!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0177202870675471;22272!GO:0031975;envelope;0.0177202870675471;22272,67126!GO:0031967;organelle envelope;0.0177202870675471;22272,67126!GO:0006091;generation of precursor metabolites and energy;0.0199794080386367;22272,67126!GO:0008324;cation transmembrane transporter activity;0.0235762164430165;22272,67126!GO:0045259;proton-transporting ATP synthase complex;0.0245295343418053;67126!GO:0031090;organelle membrane;0.0273003996548574;22272,67126!GO:0008553;hydrogen-exporting ATPase activity, phosphorylative mechanism;0.0273003996548574;67126!GO:0005746;mitochondrial respiratory chain;0.0273003996548574;22272!GO:0015075;ion transmembrane transporter activity;0.0273003996548574;22272,67126!GO:0015985;energy coupled proton transport, down electrochemical gradient;0.0273003996548574;67126!GO:0015986;ATP synthesis coupled proton transport;0.0273003996548574;67126!GO:0044446;intracellular organelle part;0.0273003996548574;66493,22272,67126!GO:0005737;cytoplasm;0.0273003996548574;66493,22272,67126,230075!GO:0044422;organelle part;0.0273003996548574;66493,22272,67126!GO:0006754;ATP biosynthetic process;0.0273003996548574;67126!GO:0006753;nucleoside phosphate metabolic process;0.0273003996548574;67126!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;0.0273003996548574;67126!GO:0016469;proton-transporting two-sector ATPase complex;0.0273003996548574;67126!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;0.0273003996548574;67126!GO:0022891;substrate-specific transmembrane transporter activity;0.0273003996548574;22272,67126!GO:0000313;organellar ribosome;0.0273003996548574;66493!GO:0046034;ATP metabolic process;0.0273003996548574;67126!GO:0005761;mitochondrial ribosome;0.0273003996548574;66493!GO:0016491;oxidoreductase activity;0.0273003996548574;22272,230075!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.0273003996548574;67126!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.0273003996548574;67126!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.0273003996548574;67126!GO:0050136;NADH dehydrogenase (quinone) activity;0.0273003996548574;230075!GO:0008137;NADH dehydrogenase (ubiquinone) activity;0.0273003996548574;230075!GO:0003954;NADH dehydrogenase activity;0.0273003996548574;230075!GO:0019829;cation-transporting ATPase activity;0.0273003996548574;67126!GO:0009142;nucleoside triphosphate biosynthetic process;0.0273003996548574;67126!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.0273003996548574;67126!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;0.0273003996548574;230075!GO:0009199;ribonucleoside triphosphate metabolic process;0.0273003996548574;67126!GO:0006119;oxidative phosphorylation;0.0273003996548574;67126!GO:0009144;purine nucleoside triphosphate metabolic process;0.0273003996548574;67126!GO:0031980;mitochondrial lumen;0.0273003996548574;66493!GO:0015992;proton transport;0.0273003996548574;67126!GO:0005759;mitochondrial matrix;0.0273003996548574;66493!GO:0022857;transmembrane transporter activity;0.0273003996548574;22272,67126!GO:0006752;group transfer coenzyme metabolic process;0.0273003996548574;67126!GO:0044249;cellular biosynthetic process;0.0273003996548574;66493,67126!GO:0009141;nucleoside triphosphate metabolic process;0.0274130749186557;67126!GO:0009152;purine ribonucleotide biosynthetic process;0.0274130749186557;67126!GO:0006818;hydrogen transport;0.0274130749186557;67126!GO:0015662;ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;0.0274130749186557;67126!GO:0009260;ribonucleotide biosynthetic process;0.0274130749186557;67126!GO:0043231;intracellular membrane-bound organelle;0.0274130749186557;66493,22272,67126,230075!GO:0043227;membrane-bound organelle;0.0274130749186557;66493,22272,67126,230075!GO:0022892;substrate-specific transporter activity;0.0277030697338808;22272,67126!GO:0009150;purine ribonucleotide metabolic process;0.0277030697338808;67126!GO:0006164;purine nucleotide biosynthetic process;0.0277317077783534;67126!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;0.0277594701017158;230075!GO:0009259;ribonucleotide metabolic process;0.0290233988590009;67126!GO:0006163;purine nucleotide metabolic process;0.0302516260249248;67126!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0326469894789926;67126!GO:0009108;coenzyme biosynthetic process;0.0330016178530571;67126!GO:0051188;cofactor biosynthetic process;0.0376280457883119;67126!GO:0009058;biosynthetic process;0.0381003043476087;66493,67126!GO:0043229;intracellular organelle;0.0381807149439813;66493,22272,67126,230075!GO:0043226;organelle;0.0381807149439813;66493,22272,67126,230075!GO:0043492;ATPase activity, coupled to movement of substances;0.0420710765210653;67126!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0420710765210653;67126!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0420710765210653;67126!GO:0009165;nucleotide biosynthetic process;0.0436924945731703;67126!GO:0015399;primary active transmembrane transporter activity;0.0447405944058265;67126!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0447405944058265;67126!GO:0009055;electron carrier activity;0.0469532093348615;230075! | |||
|ontology_enrichment_celltype=CL:0000066!3.98e-07!25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_uberon=UBERON:0000344!3.13e-10!15;UBERON:0001242!4.22e-09!13;UBERON:0000060!4.22e-09!13;UBERON:0001262!4.22e-09!13;UBERON:0004786!4.22e-09!13;UBERON:0000160!7.55e-09!31;UBERON:0003914!2.13e-08!47 | |||
}} |
Latest revision as of 17:47, 17 September 2013
Phase1 CAGE Peaks
Short description | |
---|---|
Mm9::chr11:53244281..53244340,- | p1@Uqcrq |
Mm9::chr2:174289540..174289551,- | p2@Atp5e |
Mm9::chr4:40226373..40226414,- | p1@Ndufb6 |
Mm9::chr6:125142195..125142228,+ | p1@Mrpl51 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
GO ID | GO name | FDR corrected p-value |
---|---|---|
GO:0005739 | mitochondrion | 0.000878702121549544 |
GO:0044429 | mitochondrial part | 0.00139034920464052 |
GO:0044455 | mitochondrial membrane part | 0.00155129181801757 |
GO:0015078 | hydrogen ion transmembrane transporter activity | 0.0044695623510328 |
GO:0015077 | monovalent inorganic cation transmembrane transporter activity | 0.0044695623510328 |
GO:0022890 | inorganic cation transmembrane transporter activity | 0.00693727815077478 |
GO:0005753 | mitochondrial proton-transporting ATP synthase complex | 0.0128646546783533 |
GO:0044444 | cytoplasmic part | 0.0134689523553146 |
GO:0005743 | mitochondrial inner membrane | 0.0134941987268441 |
GO:0019866 | organelle inner membrane | 0.0134941987268441 |
GO:0031966 | mitochondrial membrane | 0.0134941987268441 |
GO:0005740 | mitochondrial envelope | 0.0138508279464587 |
GO:0045261 | proton-transporting ATP synthase complex, catalytic core F(1) | 0.0138508279464587 |
GO:0033178 | proton-transporting two-sector ATPase complex, catalytic domain | 0.0150038303946409 |
GO:0016681 | oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor | 0.0177202870675471 |
GO:0008121 | ubiquinol-cytochrome-c reductase activity | 0.0177202870675471 |
GO:0016679 | oxidoreductase activity, acting on diphenols and related substances as donors | 0.0177202870675471 |
GO:0031975 | envelope | 0.0177202870675471 |
GO:0031967 | organelle envelope | 0.0177202870675471 |
GO:0006091 | generation of precursor metabolites and energy | 0.0199794080386367 |
GO:0008324 | cation transmembrane transporter activity | 0.0235762164430165 |
GO:0045259 | proton-transporting ATP synthase complex | 0.0245295343418053 |
GO:0031090 | organelle membrane | 0.0273003996548574 |
GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism | 0.0273003996548574 |
GO:0005746 | mitochondrial respiratory chain | 0.0273003996548574 |
GO:0015075 | ion transmembrane transporter activity | 0.0273003996548574 |
GO:0015985 | energy coupled proton transport, down electrochemical gradient | 0.0273003996548574 |
GO:0015986 | ATP synthesis coupled proton transport | 0.0273003996548574 |
GO:0044446 | intracellular organelle part | 0.0273003996548574 |
GO:0005737 | cytoplasm | 0.0273003996548574 |
GO:0044422 | organelle part | 0.0273003996548574 |
GO:0006754 | ATP biosynthetic process | 0.0273003996548574 |
GO:0006753 | nucleoside phosphate metabolic process | 0.0273003996548574 |
GO:0046933 | hydrogen ion transporting ATP synthase activity, rotational mechanism | 0.0273003996548574 |
GO:0016469 | proton-transporting two-sector ATPase complex | 0.0273003996548574 |
GO:0046961 | hydrogen ion transporting ATPase activity, rotational mechanism | 0.0273003996548574 |
GO:0022891 | substrate-specific transmembrane transporter activity | 0.0273003996548574 |
GO:0000313 | organellar ribosome | 0.0273003996548574 |
GO:0046034 | ATP metabolic process | 0.0273003996548574 |
GO:0005761 | mitochondrial ribosome | 0.0273003996548574 |
GO:0016491 | oxidoreductase activity | 0.0273003996548574 |
GO:0009145 | purine nucleoside triphosphate biosynthetic process | 0.0273003996548574 |
GO:0009206 | purine ribonucleoside triphosphate biosynthetic process | 0.0273003996548574 |
GO:0009201 | ribonucleoside triphosphate biosynthetic process | 0.0273003996548574 |
GO:0050136 | NADH dehydrogenase (quinone) activity | 0.0273003996548574 |
GO:0008137 | NADH dehydrogenase (ubiquinone) activity | 0.0273003996548574 |
GO:0003954 | NADH dehydrogenase activity | 0.0273003996548574 |
GO:0019829 | cation-transporting ATPase activity | 0.0273003996548574 |
GO:0009142 | nucleoside triphosphate biosynthetic process | 0.0273003996548574 |
GO:0009205 | purine ribonucleoside triphosphate metabolic process | 0.0273003996548574 |
GO:0016655 | oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor | 0.0273003996548574 |
GO:0009199 | ribonucleoside triphosphate metabolic process | 0.0273003996548574 |
GO:0006119 | oxidative phosphorylation | 0.0273003996548574 |
GO:0009144 | purine nucleoside triphosphate metabolic process | 0.0273003996548574 |
GO:0031980 | mitochondrial lumen | 0.0273003996548574 |
GO:0015992 | proton transport | 0.0273003996548574 |
GO:0005759 | mitochondrial matrix | 0.0273003996548574 |
GO:0022857 | transmembrane transporter activity | 0.0273003996548574 |
GO:0006752 | group transfer coenzyme metabolic process | 0.0273003996548574 |
GO:0044249 | cellular biosynthetic process | 0.0273003996548574 |
GO:0009141 | nucleoside triphosphate metabolic process | 0.0274130749186557 |
GO:0009152 | purine ribonucleotide biosynthetic process | 0.0274130749186557 |
GO:0006818 | hydrogen transport | 0.0274130749186557 |
GO:0015662 | ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 0.0274130749186557 |
GO:0009260 | ribonucleotide biosynthetic process | 0.0274130749186557 |
GO:0043231 | intracellular membrane-bound organelle | 0.0274130749186557 |
GO:0043227 | membrane-bound organelle | 0.0274130749186557 |
GO:0022892 | substrate-specific transporter activity | 0.0277030697338808 |
GO:0009150 | purine ribonucleotide metabolic process | 0.0277030697338808 |
GO:0006164 | purine nucleotide biosynthetic process | 0.0277317077783534 |
GO:0016651 | oxidoreductase activity, acting on NADH or NADPH | 0.0277594701017158 |
GO:0009259 | ribonucleotide metabolic process | 0.0290233988590009 |
GO:0006163 | purine nucleotide metabolic process | 0.0302516260249248 |
GO:0042625 | ATPase activity, coupled to transmembrane movement of ions | 0.0326469894789926 |
GO:0009108 | coenzyme biosynthetic process | 0.0330016178530571 |
GO:0051188 | cofactor biosynthetic process | 0.0376280457883119 |
GO:0009058 | biosynthetic process | 0.0381003043476087 |
GO:0043229 | intracellular organelle | 0.0381807149439813 |
GO:0043226 | organelle | 0.0381807149439813 |
GO:0043492 | ATPase activity, coupled to movement of substances | 0.0420710765210653 |
GO:0042626 | ATPase activity, coupled to transmembrane movement of substances | 0.0420710765210653 |
GO:0016820 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | 0.0420710765210653 |
GO:0009165 | nucleotide biosynthetic process | 0.0436924945731703 |
GO:0015399 | primary active transmembrane transporter activity | 0.0447405944058265 |
GO:0015405 | P-P-bond-hydrolysis-driven transmembrane transporter activity | 0.0447405944058265 |
GO:0009055 | electron carrier activity | 0.0469532093348615 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.98e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
mucosa | 3.13e-10 | 15 |
intestinal mucosa | 4.22e-09 | 13 |
anatomical wall | 4.22e-09 | 13 |
wall of intestine | 4.22e-09 | 13 |
gastrointestinal system mucosa | 4.22e-09 | 13 |
intestine | 7.55e-09 | 31 |
epithelial tube | 2.13e-08 | 47 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
MA0003.1 | 0.142214 |
MA0004.1 | 0.6888 |
MA0006.1 | 0.497533 |
MA0007.1 | 0.672186 |
MA0009.1 | 1.15569 |
MA0014.1 | 0.581929 |
MA0017.1 | 0.528196 |
MA0019.1 | 0.964875 |
MA0024.1 | 1.11019 |
MA0025.1 | 1.39562 |
MA0027.1 | 2.81824 |
MA0028.1 | 2.19266 |
MA0029.1 | 1.08753 |
MA0030.1 | 1.09438 |
MA0031.1 | 1.05719 |
MA0038.1 | 0.846479 |
MA0040.1 | 1.16866 |
MA0041.1 | 0.604221 |
MA0042.1 | 0.589368 |
MA0043.1 | 1.25564 |
MA0046.1 | 1.1929 |
MA0048.1 | 0.735223 |
MA0050.1 | 0.731539 |
MA0051.1 | 0.856094 |
MA0052.1 | 1.17701 |
MA0055.1 | 1.28762 |
MA0056.1 | 0 |
MA0057.1 | 0.701847 |
MA0058.1 | 0.581673 |
MA0059.1 | 0.59559 |
MA0060.1 | 1.04037 |
MA0061.1 | 0.438628 |
MA0063.1 | 0 |
MA0066.1 | 0.834648 |
MA0067.1 | 1.50873 |
MA0068.1 | 0.713436 |
MA0069.1 | 1.17737 |
MA0070.1 | 1.16732 |
MA0071.1 | 0.73062 |
MA0072.1 | 1.15853 |
MA0073.1 | 0.00221226 |
MA0074.1 | 0.795862 |
MA0076.1 | 4.59949 |
MA0077.1 | 1.13603 |
MA0078.1 | 0.891476 |
MA0081.1 | 1.5065 |
MA0083.1 | 1.25482 |
MA0084.1 | 1.84013 |
MA0087.1 | 1.21037 |
MA0088.1 | 0.201215 |
MA0089.1 | 0 |
MA0090.1 | 0.650768 |
MA0091.1 | 0.703314 |
MA0092.1 | 0.651119 |
MA0093.1 | 1.29026 |
MA0095.1 | 0 |
MA0098.1 | 0 |
MA0100.1 | 0.783305 |
MA0101.1 | 0.605676 |
MA0103.1 | 0.540576 |
MA0105.1 | 0.313353 |
MA0106.1 | 0.899777 |
MA0107.1 | 0.533522 |
MA0108.2 | 0.989014 |
MA0109.1 | 0 |
MA0111.1 | 0.666525 |
MA0113.1 | 0.869608 |
MA0114.1 | 0.43587 |
MA0115.1 | 1.25852 |
MA0116.1 | 1.24367 |
MA0117.1 | 1.22527 |
MA0119.1 | 0.606338 |
MA0122.1 | 1.24573 |
MA0124.1 | 1.45461 |
MA0125.1 | 1.37907 |
MA0130.1 | 0 |
MA0131.1 | 0.960068 |
MA0132.1 | 0 |
MA0133.1 | 0 |
MA0135.1 | 1.29308 |
MA0136.1 | 0.817395 |
MA0139.1 | 0.365453 |
MA0140.1 | 0.78318 |
MA0141.1 | 1.38335 |
MA0142.1 | 1.04199 |
MA0143.1 | 0.887119 |
MA0144.1 | 1.11951 |
MA0145.1 | 0.608454 |
MA0146.1 | 1.5929 |
MA0147.1 | 1.15069 |
MA0148.1 | 0.706718 |
MA0149.1 | 0.611881 |
MA0062.2 | 3.24307 |
MA0035.2 | 0.788288 |
MA0039.2 | 2.41467 |
MA0138.2 | 0.951653 |
MA0002.2 | 0.368961 |
MA0137.2 | 1.37638 |
MA0104.2 | 1.0034 |
MA0047.2 | 0.845655 |
MA0112.2 | 0.211985 |
MA0065.2 | 0.212467 |
MA0150.1 | 0.67206 |
MA0151.1 | 0 |
MA0152.1 | 0.84577 |
MA0153.1 | 1.31015 |
MA0154.1 | 0.728853 |
MA0155.1 | 1.8891 |
MA0156.1 | 1.35382 |
MA0157.1 | 1.0083 |
MA0158.1 | 0 |
MA0159.1 | 1.1762 |
MA0160.1 | 0.71003 |
MA0161.1 | 0 |
MA0162.1 | 0.704935 |
MA0163.1 | 0.0996272 |
MA0164.1 | 0.817786 |
MA0080.2 | 0.534538 |
MA0018.2 | 0.828253 |
MA0099.2 | 0.944966 |
MA0079.2 | 0.300141 |
MA0102.2 | 1.8929 |
MA0258.1 | 0.419871 |
MA0259.1 | 0.441366 |
MA0442.1 | 0 |