FFCP PHASE1:Hg19::chr3:48520822..48520833,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr3:48520822..48520833,-
|short_description=p17@SHISA5
|description=CAGE_peak_17_at_SHISA5_5end
|association_with_transcript=134bp_to_ENST00000486344,uc011bbl....") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51246 | |EntrezGene=51246 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30376 | |HGNC=30376 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=134bp_to_ENST00000486344,uc011bbl.1_5end | |||
|cluster_id=chr3:48520822..48520833,- | |||
|coexpression_cluster_id=C239 | |||
|description=CAGE_peak_17_at_SHISA5_5end | |||
|id=chr3:48520822..48520833,- | |||
|ontology_enrichment_celltype=CL:0000542!1.08e-43!53;CL:0000051!1.08e-43!53;CL:0000838!9.50e-42!52;CL:0000084!1.77e-29!25;CL:0000827!1.77e-29!25;CL:0000791!1.33e-24!18;CL:0000789!1.33e-24!18;CL:0002420!1.33e-24!18;CL:0002419!1.33e-24!18;CL:0000790!1.33e-24!18;CL:0002087!3.98e-21!119;CL:0000738!4.51e-19!140;CL:0002031!4.91e-16!124;CL:0000037!9.21e-15!172;CL:0000566!9.21e-15!172;CL:0002032!1.05e-13!165;CL:0000837!1.05e-13!165;CL:0000988!2.03e-13!182;CL:0000625!2.88e-12!11;CL:0000624!4.18e-12!6;CL:0000945!1.12e-09!24;CL:0000826!1.12e-09!24;CL:0000623!1.91e-09!3;CL:0000825!1.91e-09!3;CL:0000785!3.64e-07!2;CL:0000955!3.64e-07!2;CL:0000818!3.64e-07!2;CL:0000954!3.64e-07!2;CL:0000816!3.64e-07!2;CL:0000893!5.50e-07!2;CL:0002489!5.50e-07!2;CL:0000809!5.50e-07!2;CL:0000808!5.50e-07!2;CL:0000894!5.50e-07!2;CL:0000806!5.50e-07!2;CL:0000807!5.50e-07!2;CL:0000805!5.50e-07!2;CL:0002425!5.50e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000898;1.07e-14;3!CL:0000084;1.92e-14;25!CL:0000791;3.19e-14;18!CL:0000789;3.19e-14;18!CL:0002419;3.19e-14;18!CL:0000785;1.19e-11;1!CL:0000895;1.19e-11;1!CL:0000819;1.19e-11;1!CL:0000625;5.22e-09;11!CL:0000624;8.41e-08;6!CL:0000542;7.07e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000898,6.54e-15,3;CL:0000084,1.92e-14,25;CL:0000827,1.92e-14,25;CL:0000791,3.02e-14,18;CL:0000789,3.02e-14,18;CL:0002420,3.02e-14,18;CL:0002419,3.02e-14,18;CL:0000790,3.02e-14,18;CL:0000810,7.76e-12,1;CL:0000895,7.76e-12,1;CL:0002436,7.76e-12,1;CL:0002427,7.76e-12,1;CL:0002428,7.76e-12,1;CL:0002429,7.76e-12,1;CL:0002433,7.76e-12,1;CL:0002431,7.76e-12,1;CL:0002432,7.76e-12,1;CL:0000819,9.61e-12,1;CL:0000838,4.70e-09,52;CL:0000625,5.99e-09,11;CL:0000542,7.18e-09,53;CL:0000051,7.18e-09,53;CL:0000624,6.60e-08,6 | |||
|ontology_enrichment_development_v019=CL:0000790;3.19e-14;18!CL:0002427;1.19e-11;1!CL:0000051;7.07e-07;53 | |||
|ontology_enrichment_disease=DOID:0060058!2.83e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:0060073;1.19e-11;1!DOID:8675;1.19e-11;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060073,9.61e-12,1;DOID:8675,9.61e-12,1 | |||
|ontology_enrichment_uberon=UBERON:0004177!1.30e-09!7;UBERON:0002370!5.25e-07!4;UBERON:0005058!5.25e-07!4;UBERON:0009113!5.25e-07!4;UBERON:0003295!5.25e-07!4;UBERON:0005562!5.25e-07!4 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p17@SHISA5 | |||
}} | }} |
Latest revision as of 14:20, 18 September 2015
Short description: | p17@SHISA5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_SHISA5_5end |
Coexpression cluster: | C239_CD4_lymphangiectasia_CD8_NK_mycosis_Renal_hairy |
Association with transcript: | 134bp_to_ENST00000486344, uc011bbl.1_5end |
EntrezGene: | SHISA5 |
HGNC: | 30376 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
naive T cell | 6.54e-15 | 3 |
T cell | 1.92e-14 | 25 |
pro-T cell | 1.92e-14 | 25 |
mature alpha-beta T cell | 3.02e-14 | 18 |
alpha-beta T cell | 3.02e-14 | 18 |
immature T cell | 3.02e-14 | 18 |
mature T cell | 3.02e-14 | 18 |
immature alpha-beta T cell | 3.02e-14 | 18 |
CD4-positive, alpha-beta thymocyte | 7.76e-12 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 7.76e-12 | 1 |
mature CD4 single-positive thymocyte | 7.76e-12 | 1 |
resting double-positive thymocyte | 7.76e-12 | 1 |
double-positive blast | 7.76e-12 | 1 |
CD69-positive double-positive thymocyte | 7.76e-12 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 7.76e-12 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 7.76e-12 | 1 |
CD24-positive, CD4 single-positive thymocyte | 7.76e-12 | 1 |
B-1 B cell | 9.61e-12 | 1 |
lymphoid lineage restricted progenitor cell | 4.70e-09 | 52 |
CD8-positive, alpha-beta T cell | 5.99e-09 | 11 |
lymphocyte | 7.18e-09 | 53 |
common lymphoid progenitor | 7.18e-09 | 53 |
CD4-positive, alpha-beta T cell | 6.60e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
lymphatic system cancer | 9.61e-12 | 1 |
lymphosarcoma | 9.61e-12 | 1 |