NonredundantMotifs:137: Difference between revisions
From FANTOM5_SSTAR
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|entrez_gene_id=3663
|motif_cluster_2013_march_motif_members= /HOCOMOCO:IRF5_f1
|name=known137
|representative_motif_db=HOCOMOCO
|representative_motif_id=I...") |
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;0.8888888888888901;0.0;1.88888888888889;2.2222222222222197!2;3.88888888888889;0.0;1.1111111111111098;0.0!3;5.0;0.0;0.0;0.0!4;5.0;0.0;0.0;0.0!5;0.0;0.0;4.111111111111115;0.8888888888888901!6;0.8888888888888901;0.0;4.111111111111115;0.0!7;3.11111111111111;0.0;1.88888888888889;0.0!8;5.0;0.0;0.0;0.0!9;5.0;0.0;0.0;0.0!10;1.88888888888889;0.0;3.11111111111111;0.0!11;0.0;5.0;0.0;0.0!12;1.1111111111111098;2.11111111111111;0.8888888888888901;0.8888888888888901!13;4.0;0.0;1.0;0.0!14;5.0;0.0;0.0;0.0!15;5.0;0.0;0.0;0.0!16;3.22222222222222;0.0;0.0;1.7777777777777801!17;0.0;2.11111111111111;2.8888888888888897;0.0!18;2.2222222222222197;0.0;0.0;2.7777777777777803!19;0.0;0.0;4.111111111111115;0.8888888888888901!20;3.444444444444445;1.1111111111111098;0.222222222222222;0.222222222222222 | |||
|entrez_gene_id=3663 | |entrez_gene_id=3663 | ||
|motif_cluster_2013_march_motif_members= /HOCOMOCO:IRF5_f1 | |motif_cluster_2013_march_motif_members= /HOCOMOCO:IRF5_f1 | ||
|name= | |name=non-redundant137 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
|representative_motif_id=IRF5_f1 | |representative_motif_id=IRF5_f1 | ||
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[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:22, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant137
- db :HOCOMOCO
- Id :IRF5_f1
- name :
- score :0.11620521507921608
- External refs:
- Internal refs:
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Sub Motif Members
