NonredundantMotifs:201: Difference between revisions
From FANTOM5_SSTAR
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|entrez_gene_id=
|motif_cluster_2013_march_motif_members= /SWISSREGULON:ALX1.p2
|name=known201
|representative_motif_db=SWISSREGULON
|representative_motif_...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=PO;A;C;G;T!1;79.334802;30.187075;11.671023;39.11148!2;75.758951;39.804695;33.95761;10.783124!3;49.264106;46.809618;10.776781;53.453875!4;1.624345;0.749118;0;157.930917!5;136.373394;4.4525;5.369937;14.108549!6;158.727167;0;0;1.577213!7;1.508366;7.678933;0.690944;150.426137!8;0.695534;11.381705;13.351513;134.875628!9;88.004985;21.998116;16.720946;33.580333!10;47.758261;39.506319;24.613038;48.426762!11;31.136202;60.868109;7.840269;60.4598!12;145.395351;0.962932;10.806892;3.139205!13;0.692268;10.059374;1.564066;147.988672!14;9.51174;7.890105;0;142.902535!15;118.052898;3.531078;27.492738;11.227666!16;14.304979;27.682412;31.513372;86.803617!17;17.672332;66.136874;11.206336;65.288838!18;58.639634;21.05798;18.928821;61.677945 | ||
|entrez_gene_id=ALX1 | |||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:ALX1.p2 | |motif_cluster_2013_march_motif_members= /SWISSREGULON:ALX1.p2 | ||
|name= | |name=non-redundant201 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=ALX1.p2 | |representative_motif_id=ALX1.p2 | ||
|representative_motif_name= | |representative_motif_name=ALX1 | ||
|score=0.04904433568073474 | |score=0.04904433568073474 | ||
|uniprot_entry_name= | |uniprot_entry_name=ALX1 | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:22, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant201
- db :SWISSREGULON
- Id :ALX1.p2
- name :ALX1
- score :0.04904433568073474
- External refs:
- Internal refs:
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Sub Motif Members
