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|PWM=P0;A;C;G;T!1;0.162967914741135;0.284827804822891;0.440984218018725;0.111220062417249!2;0.151391705490076;0.20063514946357;0.205315927848008;0.442657217198346!3;0.267215083819133;0.0836691785105082;0.192497559567532;0.456618178102827!4;0.332770917001163;0.180710869680599;0.200027237036156;0.286490976282082!5;0.509369565837701;0.102954411962803;0.242568815750995;0.145107206448501!6;0.666262497035337;0.0773094200023419;0.154465739074882;0.101962343887439!7;0.737968450778585;0.113335214159628;0.100400517228193;0.0482958178335944!8;0.6588779783107;0.141579874740754;0.134032554794489;0.0655095921540571!9;0.766114793868655;0.0940507412432602;0.0697627573156272;0.0700717075724578!10;0.755620618291091;0.0884913785101554;0.0448020364832095;0.111085966715544!11;0.749083273531726;0.135916964071178;0.0475095721776551;0.0674901902194415!12;0.663231334824103;0.17679532867608;0.0281340509223841;0.131839285577432!13;0.553358095060765;0.277658903897971;0.0386551743994655;0.130327826641798!14;0.392578441914555;0.314082537936749;0.209843815208581;0.0834952049401149!15;0.198462449591387;0.237131715592036;0.239465590861239;0.324940243955339!16;0.27512128107858;0.210087356294967;0.194778718669854;0.320012643956599!17;0.287747580841454;0.277395048845205;0.142703687726769;0.292153682586572
|PWM=P0;A;C;G;T!1;0.162967914741135;0.284827804822891;0.440984218018725;0.111220062417249!2;0.151391705490076;0.20063514946357;0.205315927848008;0.442657217198346!3;0.267215083819133;0.0836691785105082;0.192497559567532;0.456618178102827!4;0.332770917001163;0.180710869680599;0.200027237036156;0.286490976282082!5;0.509369565837701;0.102954411962803;0.242568815750995;0.145107206448501!6;0.666262497035337;0.0773094200023419;0.154465739074882;0.101962343887439!7;0.737968450778585;0.113335214159628;0.100400517228193;0.0482958178335944!8;0.6588779783107;0.141579874740754;0.134032554794489;0.0655095921540571!9;0.766114793868655;0.0940507412432602;0.0697627573156272;0.0700717075724578!10;0.755620618291091;0.0884913785101554;0.0448020364832095;0.111085966715544!11;0.749083273531726;0.135916964071178;0.0475095721776551;0.0674901902194415!12;0.663231334824103;0.17679532867608;0.0281340509223841;0.131839285577432!13;0.553358095060765;0.277658903897971;0.0386551743994655;0.130327826641798!14;0.392578441914555;0.314082537936749;0.209843815208581;0.0834952049401149!15;0.198462449591387;0.237131715592036;0.239465590861239;0.324940243955339!16;0.27512128107858;0.210087356294967;0.194778718669854;0.320012643956599!17;0.287747580841454;0.277395048845205;0.142703687726769;0.292153682586572
|entrez_gene_id=6722
|entrez_gene_id=6722
|motif_cluster_2013_march_motif_members= /SWISSREGULON:ZNF384.p2 /UNIPROBE:Elf3_secondary;SCI09~Tcfap2e_secondary;SCI09~Srf_secondary;SCI09 /HOCOMOCO:ZN384_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:ZN384_f1 /SWISSREGULON:ZNF384.p2 /UNIPROBE:Tcfap2e_secondary;SCI09~Srf_secondary;SCI09~Elf3_secondary;SCI09
|name=known68
|name=non-redundant68
|representative_motif_db=UNIPROBE
|representative_motif_db=UNIPROBE
|representative_motif_id=Srf_secondary
|representative_motif_id=Srf_secondary
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant68
  • db :UNIPROBE
  • Id :Srf_secondary
  • name :SCI09
  • score :1.6934130219534125
  • External refs:
EntrezGene:6722
UniProt:6722

  • Internal refs:
EntrezGene:6722


Motif matrix
P0ACGT
10.1629679147411350.2848278048228910.4409842180187250.111220062417249
20.1513917054900760.200635149463570.2053159278480080.442657217198346
30.2672150838191330.08366917851050820.1924975595675320.456618178102827
40.3327709170011630.1807108696805990.2000272370361560.286490976282082
50.5093695658377010.1029544119628030.2425688157509950.145107206448501
60.6662624970353370.07730942000234190.1544657390748820.101962343887439
70.7379684507785850.1133352141596280.1004005172281930.0482958178335944
80.65887797831070.1415798747407540.1340325547944890.0655095921540571
90.7661147938686550.09405074124326020.06976275731562720.0700717075724578
100.7556206182910910.08849137851015540.04480203648320950.111085966715544
110.7490832735317260.1359169640711780.04750957217765510.0674901902194415
120.6632313348241030.176795328676080.02813405092238410.131839285577432
130.5533580950607650.2776589038979710.03865517439946550.130327826641798
140.3925784419145550.3140825379367490.2098438152085810.0834952049401149
150.1984624495913870.2371317155920360.2394655908612390.324940243955339
160.275121281078580.2100873562949670.1947787186698540.320012643956599
170.2877475808414540.2773950488452050.1427036877267690.292153682586572

Sub Motif Members

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