NonredundantMotifs:6: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
m (Autoedit moved page NonredundantMotifs:Motif6 to NonredundantMotifs:6 without leaving a redirect: NSchange) |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 2: | Line 2: | ||
|PWM=P0;A;C;G;T!1;55.36011656952525;10.959616985845102;30.51831806827636;17.141965029142305!2;91.49875104079909;1.011656952539547;20.457951706910904;1.011656952539547!3;0.0;0.0;113.980016652789;0.0!4;0.0;1.686094920899243;104.87510407993315;7.41881765195668!5;2.9225645295586875;3.709408825978346;3.8218151540382954;103.52622814321379!6;1.1240632805994974;111.84429641965012;0.0;1.011656952539547!7;100.06973355537036;0.25291423813488645;6.547668609492072;7.109700249791819 | |PWM=P0;A;C;G;T!1;55.36011656952525;10.959616985845102;30.51831806827636;17.141965029142305!2;91.49875104079909;1.011656952539547;20.457951706910904;1.011656952539547!3;0.0;0.0;113.980016652789;0.0!4;0.0;1.686094920899243;104.87510407993315;7.41881765195668!5;2.9225645295586875;3.709408825978346;3.8218151540382954;103.52622814321379!6;1.1240632805994974;111.84429641965012;0.0;1.011656952539547!7;100.06973355537036;0.25291423813488645;6.547668609492072;7.109700249791819 | ||
|entrez_gene_id=5465 | |entrez_gene_id=5465 | ||
|motif_cluster_2013_march_motif_members= / | |motif_cluster_2013_march_motif_members= /HOCOMOCO:NR4A2_si~NR4A1_f1~ERR2_f1~NR4A3_f1~ERR1_f1~COT2_f1~COT1_si~PPARA_f1~NR6A1_do~NR5A2_f1~PPARG_si~NR1I3_si~ESR2_si~RARG_f1~NR1I2_si~NR2C1_si~STF1_f1~ERR3_f1~VDR_f1 /HOMER:NR5A2_Pancreas-LRH1-ChIP-Seq(GSE34295)~ESRRA_HepG2-Erra-ChIP-Seq~ESRRB_mES-Esrrb-ChIP-Seq~NR4A1_K562-NR4A1-ChIP-Seq(GSE31363)~NR5A2_mES-Nr5a2-ChIP-Seq~RARG_ES-RARg-ChIP-Seq(GSE30538) /JASPAR:MA0160.1;NR4A2~MA0141.1;Esrrb~MA0071.1;RORA_1 /SWISSREGULON:ESRRA.p2~NR4A2.p2~NR6A1.p2~NR5A1,2.p2 /UNIPROBE:Rara_primary;SCI09~Nr2f2_primary;SCI09~Esrra_primary;SCI09 | ||
|name= | |name=non-redundant6 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
|representative_motif_id=PPARA_f1 | |representative_motif_id=PPARA_f1 | ||
| Line 12: | Line 12: | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant6
- db :HOCOMOCO
- Id :PPARA_f1
- name :
- score :0.259608263644651
- External refs:
- Internal refs:
| Motif matrix | ||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
