Personal tools

NonredundantMotifs:12: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(4 intermediate revisions by one other user not shown)
Line 2: Line 2:
|PWM=P0;A;C;G;T!1;86.18062234794844;93.99533239038107;173.767892503535;61.17355021216349!2;72.89561527581266;90.6506364922197;197.11824611032407;54.45289957567156!3;94.6517680339455;91.33833097595416;182.23903818953207;46.88826025459667!4;114.65742574257321;91.02574257425675;161.60820367750952;47.82602545968848!5;71.33267326732604;82.89844413012672;230.25261669023948;30.633663366336375!6;50.139179632248364;31.133804809052098;264.94992927864064;68.89448373408729!7;57.51626591230513;1.0002828854313937;354.85035360678586;1.750495049504938!8;1.0002828854313937;4.2512022630834245;405.73974540310707;4.126166902404491!9;4.001131541725571;8.127298444130046;401.1134370579869;1.8755304101838588!10;97.34002828854244;260.511173974539;21.00594059405924;36.26025459688797!11;18.442715700141306;14.254031117397362;369.5420084865593;12.878642149929194!12;3.000848656294177;6.126732673267275;361.8523338048056;44.137482319660094!13;78.64724186704316;14.504101838755204;298.5844413012708;23.381612446958773!14;39.511173974539986;55.26562942008448;304.96124469589563;15.379349363507648!15;47.38840169731219;229.94002828854207;99.2780763790657;38.51089108910862!16;46.51315417255962;152.4181046676084;130.97454031117294;85.21159830268661!17;106.90523338047981;55.20311173974483;186.74031117397337;66.26874115982999!18;83.27355021216336;69.51966053748167;214.1230551626578;48.20113154172511!19;68.01923620933471;110.03111739745303;189.1159830268729;47.95106082036735!20;75.58387553040959;100.403394625176;186.74031117397337;52.389816124469014
|PWM=P0;A;C;G;T!1;86.18062234794844;93.99533239038107;173.767892503535;61.17355021216349!2;72.89561527581266;90.6506364922197;197.11824611032407;54.45289957567156!3;94.6517680339455;91.33833097595416;182.23903818953207;46.88826025459667!4;114.65742574257321;91.02574257425675;161.60820367750952;47.82602545968848!5;71.33267326732604;82.89844413012672;230.25261669023948;30.633663366336375!6;50.139179632248364;31.133804809052098;264.94992927864064;68.89448373408729!7;57.51626591230513;1.0002828854313937;354.85035360678586;1.750495049504938!8;1.0002828854313937;4.2512022630834245;405.73974540310707;4.126166902404491!9;4.001131541725571;8.127298444130046;401.1134370579869;1.8755304101838588!10;97.34002828854244;260.511173974539;21.00594059405924;36.26025459688797!11;18.442715700141306;14.254031117397362;369.5420084865593;12.878642149929194!12;3.000848656294177;6.126732673267275;361.8523338048056;44.137482319660094!13;78.64724186704316;14.504101838755204;298.5844413012708;23.381612446958773!14;39.511173974539986;55.26562942008448;304.96124469589563;15.379349363507648!15;47.38840169731219;229.94002828854207;99.2780763790657;38.51089108910862!16;46.51315417255962;152.4181046676084;130.97454031117294;85.21159830268661!17;106.90523338047981;55.20311173974483;186.74031117397337;66.26874115982999!18;83.27355021216336;69.51966053748167;214.1230551626578;48.20113154172511!19;68.01923620933471;110.03111739745303;189.1159830268729;47.95106082036735!20;75.58387553040959;100.403394625176;186.74031117397337;52.389816124469014
|entrez_gene_id=6670
|entrez_gene_id=6670
|motif_cluster_2013_march_motif_members= /JASPAR:MA0162.1;Egr1~MA0079.2;SP1 /SWISSREGULON:EGR1..3.p2~PATZ1.p2~MAZ.p2~SP1.p2 /HOMER:EGR2_Thymocytes-Egr2-ChIP-Seq(GSE34254)~EGR1_K562-EGR1-ChIP-Seq /UNIPROBE:Zfp410_secondary;SCI09~Sp4_primary;SCI09~Zif268;NBT06~Bcl6b_secondary;SCI09~Egr1_primary;SCI09 /HOCOMOCO:SP1_f1~SP1_f2~EGR3_f1~EGR1_f2~ZN148_si~EGR2_si~EGR4_f1~WT1_f1~SP3_f1~KLF6_si
|motif_cluster_2013_march_motif_members= /HOCOMOCO:EGR3_f1~EGR1_f2~EGR2_si~SP3_f1~SP1_f2~SP1_f1~WT1_f1~ZN148_si~EGR4_f1~KLF6_si /HOMER:EGR1_K562-EGR1-ChIP-Seq~EGR2_Thymocytes-Egr2-ChIP-Seq(GSE34254) /JASPAR:MA0079.2;SP1~MA0162.1;Egr1 /SWISSREGULON:PATZ1.p2~MAZ.p2~EGR1..3.p2~SP1.p2 /UNIPROBE:Zfp410_secondary;SCI09~Egr1_primary;SCI09~Sp4_primary;SCI09~Zif268;NBT06~Bcl6b_secondary;SCI09
|name=known12
|name=non-redundant12
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO
|representative_motif_id=SP3_f1
|representative_motif_id=SP3_f1
Line 10: Line 10:
|uniprot_entry_name=SP3_HUMAN
|uniprot_entry_name=SP3_HUMAN
}}
}}
[[Category:Motif]]
[[Category:MotifCluster2013March]]

Latest revision as of 10:51, 5 November 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant12
  • db :HOCOMOCO
  • Id :SP3_f1
  • name  :
  • score :5.013317861704715
  • External refs:
EntrezGene:6670
UniProt:6670

  • Internal refs:
EntrezGene:6670


Motif matrix
P0ACGT
186.1806223479484493.99533239038107173.76789250353561.17355021216349
272.8956152758126690.6506364922197197.1182461103240754.45289957567156
394.651768033945591.33833097595416182.2390381895320746.88826025459667
4114.6574257425732191.02574257425675161.6082036775095247.82602545968848
571.3326732673260482.89844413012672230.2526166902394830.633663366336375
650.13917963224836431.133804809052098264.9499292786406468.89448373408729
757.516265912305131.0002828854313937354.850353606785861.750495049504938
81.00028288543139374.2512022630834245405.739745403107074.126166902404491
94.0011315417255718.127298444130046401.11343705798691.8755304101838588
1097.34002828854244260.51117397453921.0059405940592436.26025459688797
1118.44271570014130614.254031117397362369.542008486559312.878642149929194
123.0008486562941776.126732673267275361.852333804805644.137482319660094
1378.6472418670431614.504101838755204298.584441301270823.381612446958773
1439.51117397453998655.26562942008448304.9612446958956315.379349363507648
1547.38840169731219229.9400282885420799.278076379065738.51089108910862
1646.51315417255962152.4181046676084130.9745403111729485.21159830268661
17106.9052333804798155.20311173974483186.7403111739733766.26874115982999
1883.2735502121633669.51966053748167214.123055162657848.20113154172511
1968.01923620933471110.03111739745303189.115983026872947.95106082036735
2075.58387553040959100.403394625176186.7403111739733752.389816124469014

Sub Motif Members

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=NonredundantMotifs:12&oldid=3080673"