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Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant5
  • db :SWISSREGULON
  • Id :SOX5.p2
  • name :SOX5
  • score :0.14579468830249348
  • External refs:
EntrezGene:SOX5
UniProt:SOX5

  • Internal refs:
EntrezGene:SOX5


Motif matrix
POACGT
1670.876482999999270.139036334.377107295.430212
21533.643414.84293929.5009932.835496
31548.372072022.4507660
401538.601005032.221833
51565.7805852.1611432.881110
61563.7167024.1359912.9701450
70.7951348.99396401561.03374

Sub Motif Members