FFCP PHASE1:Hg19::chr12:2162711..2162756,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=775 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1390 | |||
|TSSclassifier=strong | |||
|UniProt=E9PDJ1,E9PDJ0,E9PDI6,Q13936,F5GY28 | |||
|association_with_transcript=0bp_to_ENST00000327702,ENST00000344100,ENST00000347598,ENST00000399591,ENST00000399595,ENST00000399597,ENST00000399601,ENST00000399603,ENST00000399606,ENST00000399617,ENST00000399621,ENST00000399629,ENST00000399634,ENST00000399637,ENST00000399638,ENST00000399641,ENST00000399644,ENST00000399649,ENST00000402845,ENST00000406454_5end | |||
|cluster_id=chr12:2162711..2162756,+ | |||
|description=CAGE_peak_7_at_CACNA1C_5end | |||
|id=chr12:2162711..2162756,+ | |||
|ontology_enrichment_celltype=CL:0000057!2.94e-10!75;CL:0002620!4.28e-09!23 | |||
|ontology_enrichment_celltype_v019=CL:0000346;9.37e-13;3!CL:1000428;9.37e-13;3!CL:0002620;3.09e-09;23!CL:0002559;5.30e-08;5!CL:0000197;9.97e-07;6!CL:0000098;9.97e-07;6!CL:0002167;9.97e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000346,9.95e-13,3;CL:1000428,9.95e-13,3;CL:0002620,2.88e-09,23;CL:0002559,5.49e-08,5 | |||
|ontology_enrichment_development_v019=UBERON:0007297;2.03e-18;2!UBERON:0005754;2.83e-10;1!UBERON:0001045;6.91e-10;1!UBERON:0010115;6.91e-10;1!UBERON:0004874;6.91e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.18e-29!115;UBERON:0001950!4.24e-10!20;UBERON:0002619!5.41e-10!22;UBERON:0000475!2.49e-09!365;UBERON:0001049!6.13e-09!57;UBERON:0005068!6.13e-09!57;UBERON:0006241!6.13e-09!57;UBERON:0007135!6.13e-09!57;UBERON:0001893!1.80e-08!34;UBERON:0001869!2.48e-08!32;UBERON:0002616!2.55e-08!59;UBERON:0000956!2.59e-08!25;UBERON:0000203!2.59e-08!25;UBERON:0002791!6.77e-08!33;UBERON:0002780!7.37e-08!41;UBERON:0001890!7.37e-08!41;UBERON:0006240!7.37e-08!41;UBERON:0001017!9.17e-08!82;UBERON:0000955!1.12e-07!69;UBERON:0006238!1.12e-07!69;UBERON:0005743!1.27e-07!86;UBERON:0003080!1.54e-07!42;UBERON:0000073!4.12e-07!94;UBERON:0001016!4.12e-07!94;UBERON:0002097!6.81e-07!40;UBERON:0003075!7.47e-07!86;UBERON:0007284!7.47e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000412;9.37e-13;3!UBERON:0001992;9.37e-13;3!UBERON:0006947;1.33e-12;3!UBERON:0004054;1.33e-12;3!UBERON:0006834;1.97e-10;1!UBERON:0000998;2.83e-10;1!UBERON:0002146;2.83e-10;1!UBERON:0006868;2.83e-10;1!UBERON:0005623;2.83e-10;1!UBERON:0002363;6.91e-10;1!UBERON:0001154;6.91e-10;1!UBERON:0000989;6.91e-10;1!UBERON:0001301;6.91e-10;1!UBERON:0001153;6.91e-10;1!UBERON:0008811;6.91e-10;1!UBERON:0009854;6.91e-10;1!UBERON:0005904;1.12e-09;4!UBERON:0002073;5.30e-08;5!UBERON:0004907;6.53e-08;5!UBERON:0000059;8.62e-08;11!UBERON:0003135;1.22e-07;11!UBERON:0002097;9.43e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000412,9.95e-13,3;UBERON:0001992,9.95e-13,3;UBERON:0006947,1.78e-12,3;UBERON:0004054,1.78e-12,3;UBERON:0006834,1.98e-10,1;UBERON:0002146,2.59e-10,1;UBERON:0005623,2.59e-10,1;UBERON:0000998,3.71e-10,1;UBERON:0006868,3.71e-10,1;UBERON:0002363,4.06e-10,1;UBERON:0007645,4.06e-10,1;UBERON:0007647,4.06e-10,1;UBERON:0010115,4.06e-10,1;UBERON:0000989,6.33e-10,1;UBERON:0008811,6.33e-10,1;UBERON:0006258,6.33e-10,1;UBERON:0005876,6.33e-10,1;UBERON:0004874,6.33e-10,1;UBERON:0001301,8.24e-10,1;UBERON:0001154,9.82e-10,1;UBERON:0001153,9.82e-10,1;UBERON:0001045,9.82e-10,1;UBERON:0002097,1.23e-09,41;UBERON:0005904,1.39e-09,4;UBERON:0002199,1.66e-08,46;UBERON:0002416,1.66e-08,46;UBERON:0002073,5.49e-08,5;UBERON:0005086,5.49e-08,5;UBERON:0004907,7.51e-08,5;UBERON:0000059,9.46e-08,11;UBERON:0003135,1.34e-07,11;UBERON:0004876,1.34e-07,11;UBERON:0007023,1.61e-07,114 | |||
|phase1_expression=0.54503513781167,0.428201047781966,0.140954404095971,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369363174230364,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0,0,0,0.654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.264818361626438,0.860509862246441,0.354668382198357,0,0,0,0,0,0,0.151357427644931,0.576175924479999,0,0,0.570471821544449,0,0,0,0,0,0.122834317311768,0.309977343527296,1.18800285728205,0.494533858557114,0,0,0,0,0.554128230968366,0,0.612975591598039,0.751190294532984,0.113432183160021,0.89694817844431,0.427114777637135,0.423863802319124,0.300091096084402,0.103052529238439,1.54584324027377,0.18611685633159,1.0126579934476,0.487185025805993,1.7670364197088,0,1.45481451136931,2.84007674013291,0.503760491138201,0.169560592310488,0,0,0,0,0,0,0.10366105501537,0,0,6.25798129319264,0.643240938192885,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0.718874566474748,0,0,0.289562613335158,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.28767947683888,1.07057393278297,0.788512075169673,0.585707074963566,0.300946099727719,0,0,0,0.368738337083406,0.173767228936166,0,0,0,0,0,0,0,0,0.248107807818777,1.53461973288062,0.561320188866147,0,0,0,0,0,0,0,0.519254429183621,0,0,0,0,0,0.364182336013434,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0.096670718292122,0.154048617114644,0,0,0.107420244868274,0.145016693914229,0.0852266274161009,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0.179872457583315,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0.551365343546124,0,0,0,0,0,0,0,0,0.0982490410131212,0,0.354761064070598,0.211107635297664,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0.994147647766298,0.703347082052564,0,0,0,2.39097585901284,1.10513566212459,0,0,0,0,0,0,0,1.57829449019094,0,0,0,0.463840490809256,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331737779793674,0.295547618953547,0.219385397153973,0,0,0.846452843541768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.97630965539252,0.796118080530053,0.611030144933625,0,0,0,0.202203398942031,0,0,0,0,0,0.394584402849391,0,0,1.76922422959766,0,0,0,0,0,0,0,0,0,0,0,1.22308667769421,0,0,0,0,0.775912131907355,0,0.225980740780532,0,0,0.379864775735272,0,0,0.640358984218058,0,0,0,0,0,0,0,0.135904206073614,0,0.101998217636322,0,0,0,0,0,0,0.558564802544508,2.7499250881402,0,0.199679000498991,0.429226048136571,0,0.201550417460179,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.485996453264197,0,0.0788057072991982,0.314727528809989,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0.511164065356265,0.113312091520126,0,0,0,0,0,0,0.320362237703084,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0.366078794705889,0.250381861413,0,0,0.310482014706917,0,0,0,0,0,0,0,0.298509605773748,0.467426619694449,0.554805861502613,0,0.50313580350515,0,0,0.302461847526478,0,0.295710299979268,0,0,0,0,0,0,0.150257608997218,0,0,0.181848659202559,0.107410557042488,0,0,0,0.343395705182793,0.673498977531838,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0.385375350578757,0,0.478901577171454,0.615349092722265,0,0.484100767249525,0,0,0,0,0,0,0,0,0,0.526472298444801,0.20170506870352,0,0,0,0,0.270150338473579,0.781078098613847,0.206686796501184,0.443910671357348,0,0,1.48863353516788,0,0,0,0,0,0,0.177404740325278,0,0,0,0.460409414939944,0,0,0.863424021355654,0.157115589916002,0,2.73947616152849,0,0,0.357382720883282,0,0,0,0,0,0.3414369541879,0,0,0,0,2.11693525095465,0,0,0,0,0,0,0.647428837187895,0.102662806856247,0,0.485710993059139,0,0,0,0,0,0,0.385870790539723,0.218559560503957,0.470317296361523,2.94177986104687,0,0.196308467114945,0,0.8453114551668,0,0.187967835959707,0.45120521581504,0,0,0,0,0,0,0,0,0.475940431336403,0.436350690340377,0.5290268405154,0,0.924351257262837,0,0,0,0,0,0,0,0,0.151557396436479,0.267964130156178,0.829169439458779,0.103432995861895,0.213233981900981,0.23806443146374,0,0,0,0,0,0.217716747896961,0,0,0.502055437748735,0.332660356546013,0,0,0,0,0,3.66724332548599,0.813792356631477,0.665756774185513,0.201273793591026,0 | |||
|short_description=p7@CACNA1C | |||
}} |
Latest revision as of 19:33, 17 September 2015
Short description: | p7@CACNA1C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_CACNA1C_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000327702, ENST00000344100, ENST00000347598, ENST00000399591, ENST00000399595, ENST00000399597, ENST00000399601, ENST00000399603, ENST00000399606, ENST00000399617, ENST00000399621, ENST00000399629, ENST00000399634, ENST00000399637, ENST00000399638, ENST00000399641, ENST00000399644, ENST00000399649, ENST00000402845, ENST00000406454_5end |
EntrezGene: | CACNA1C |
HGNC: | 1390 |
UniProt: | E9PDJ1E9PDJ0E9PDI6Q13936F5GY28 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hair follicle dermal papilla cell | 9.95e-13 | 3 |
stem cell of epidermis | 9.95e-13 | 3 |
skin fibroblast | 2.88e-09 | 23 |
hair follicle cell | 5.49e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
dermal papilla | 9.95e-13 | 3 |
papillary layer of dermis | 9.95e-13 | 3 |
male genital duct | 1.78e-12 | 3 |
internal male genitalia | 1.78e-12 | 3 |
uterus or analog | 1.98e-10 | 1 |
pulmonary valve | 2.59e-10 | 1 |
semi-lunar valve | 2.59e-10 | 1 |
seminal vesicle | 3.71e-10 | 1 |
seminal fluid secreting gland | 3.71e-10 | 1 |
dura mater | 4.06e-10 | 1 |
future meninx | 4.06e-10 | 1 |
ectomeninx | 4.06e-10 | 1 |
future dura mater | 4.06e-10 | 1 |
penis | 6.33e-10 | 1 |
intromittent organ | 6.33e-10 | 1 |
lateral plate mesenchyme | 6.33e-10 | 1 |
undifferentiated genital tubercle | 6.33e-10 | 1 |
somatopleure | 6.33e-10 | 1 |
epididymis | 8.24e-10 | 1 |
vermiform appendix | 9.82e-10 | 1 |
caecum | 9.82e-10 | 1 |
midgut | 9.82e-10 | 1 |
skin of body | 1.23e-09 | 41 |
duct of male reproductive system | 1.39e-09 | 4 |
integument | 1.66e-08 | 46 |
integumental system | 1.66e-08 | 46 |
hair follicle | 5.49e-08 | 5 |
hair follicle placode | 5.49e-08 | 5 |
lower digestive tract | 7.51e-08 | 5 |
large intestine | 9.46e-08 | 11 |
male reproductive organ | 1.34e-07 | 11 |
urogenital ridge | 1.34e-07 | 11 |
adult organism | 1.61e-07 | 114 |