FFCP PHASE1:Hg19::chr19:1905001..1905006,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=113178 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30385 | |||
|TSSclassifier=strong | |||
|UniProt=F8WDW4 | |||
|association_with_transcript=-364bp_to_ENST00000452128_5end | |||
|cluster_id=chr19:1905001..1905006,+ | |||
|description=CAGE_peak_11_at_SCAMP4_5end | |||
|id=chr19:1905001..1905006,+ | |||
|ontology_enrichment_celltype=CL:0002076!3.64e-15!43;CL:0000066!1.38e-13!254;CL:0000223!8.87e-13!59;CL:0000575!1.84e-07!2;CL:0002368!1.87e-07!13;CL:0000785!4.57e-07!2;CL:0000955!4.57e-07!2;CL:0000818!4.57e-07!2;CL:0000954!4.57e-07!2;CL:0000816!4.57e-07!2;CL:0000039!6.29e-07!7;CL:0000586!6.29e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0000575;5.48e-40;2!CL:0002159;2.78e-13;14!CL:0000317;3.70e-11;2!CL:1000448;3.70e-11;2!CL:0002308;3.70e-11;2!CL:0002140;3.70e-11;2!CL:0000307;5.18e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000575,6.70e-40,2;CL:0002159,3.03e-13,14;CL:0000317,4.09e-11,2;CL:1000448,4.09e-11,2;CL:0002308,4.09e-11,2;CL:0002140,4.09e-11,2;CL:0000068,5.18e-08,3;CL:0000069,5.18e-08,3;CL:0000307,5.18e-08,3;CL:0000377,5.18e-08,3;CL:0000076,5.49e-08,63 | |||
|ontology_enrichment_development_v019=CL:0000377;5.18e-08;3 | |||
|ontology_enrichment_disease=DOID:1749!8.09e-13!14;DOID:305!1.45e-09!106;DOID:0050687!1.19e-08!143 | |||
|ontology_enrichment_disease_v019=DOID:1799;3.12e-21;1!DOID:10165;3.12e-21;1!DOID:1798;3.12e-21;1!DOID:2355;3.12e-21;1!DOID:74;2.60e-11;2!DOID:4468;3.70e-11;2 | |||
|ontology_enrichment_disease_v019_2=DOID:2355,2.82e-21,1;DOID:1799,3.45e-21,1;DOID:10165,3.45e-21,1;DOID:1798,3.45e-21,1;DOID:74,2.47e-11,2;DOID:4468,3.02e-11,2 | |||
|ontology_enrichment_uberon=UBERON:0003729!2.82e-10!5;UBERON:0000344!1.78e-08!12;UBERON:0003343!1.16e-07!4;UBERON:0004785!1.16e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000964;1.41e-20;4!UBERON:0010409;1.41e-20;4!UBERON:0002419;3.70e-11;2!UBERON:0007771;3.70e-11;2!UBERON:0003297;3.70e-11;2!UBERON:0001821;3.70e-11;2!UBERON:0003487;3.70e-11;2!UBERON:0001820;3.70e-11;2!UBERON:0010313;7.96e-09;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000964,1.56e-20,4;UBERON:0010409,1.56e-20,4;UBERON:0004348,1.56e-20,4;UBERON:0005427,1.56e-20,4;UBERON:0002419,4.09e-11,2;UBERON:0007771,4.09e-11,2;UBERON:0003297,4.09e-11,2;UBERON:0001821,4.09e-11,2;UBERON:0003487,4.09e-11,2;UBERON:0001820,4.09e-11,2;UBERON:0005089,4.09e-11,2;UBERON:0005088,4.09e-11,2;UBERON:0010313,8.28e-09,10;UBERON:0002342,8.28e-09,10;UBERON:0005062,8.28e-09,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,1.39560233594486,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0.154934401160603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,1.09288586487763,1.85392221392215,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.703702806881416,0.555530670951178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213455115606889,0.303127571446259,0,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0.200506470303285,0,0,0,0,0.451199612907412,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14853107599234,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0.510450849978337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0,3.26672954583968,0,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369254416383208,0,0,0,0,0,0,0,0,0,0,0,0,0,4.32415103484899,0.254253650292766,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,0.46112780877612,0.538545866458633,0,0,0,0,0,0,0,0,0,0,0,0.158936578980379,0,1.95879369790977,0.282706142867882,0,0,0,0,0,0,0,0,0,0,0.364909578431332,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0.173559738335131,0.293977192243133,0.435296032902013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0.0824158583811665,0,0,2.37085329784197,0.795229689809303,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.825788063434183,4.95257216008533,0.346576998451015,0,0,0,0,0,0,2.09525355585138,0,0.739280431085226,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0,0.691403925334676,0,0,0,0,0.333694205676207,0,0,0,0,0,0,0,0,0.464965701472501,0,0,0,0,0,0,0,0,0,0,0,0,0.559277158988962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.499705779624645,0.357107877211315,0.705789743431384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305966489225945,0.26721740526556,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0.143444410785353,0,0.244209805832924,0,0,0,0,0,0,0,0,0 | |||
|short_description=p11@SCAMP4 | |||
}} |
Latest revision as of 18:57, 16 September 2015
Short description: | p11@SCAMP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_SCAMP4_5end |
Coexpression cluster: | NA |
Association with transcript: | -364bp_to_ENST00000452128_5end |
EntrezGene: | SCAMP4 |
HGNC: | 30385 |
UniProt: | F8WDW4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
corneal epithelial cell | 6.70e-40 | 2 |
general ecto-epithelial cell | 3.03e-13 | 14 |
sebum secreting cell | 4.09e-11 | 2 |
epithelial cell of sweat gland | 4.09e-11 | 2 |
epithelial cell of skin gland | 4.09e-11 | 2 |
acinar cell of sebaceous gland | 4.09e-11 | 2 |
duct epithelial cell | 5.18e-08 | 3 |
branched duct epithelial cell | 5.18e-08 | 3 |
tracheal epithelial cell | 5.18e-08 | 3 |
tracheoblast | 5.18e-08 | 3 |
squamous epithelial cell | 5.49e-08 | 63 |
Ontology term | p-value | n |
---|---|---|
cornea | 1.56e-20 | 4 |
eye surface | 1.56e-20 | 4 |
optic eminence | 1.56e-20 | 4 |
corneal primordium | 1.56e-20 | 4 |
skin gland | 4.09e-11 | 2 |
epidermis gland | 4.09e-11 | 2 |
gland of integumental system | 4.09e-11 | 2 |
sebaceous gland | 4.09e-11 | 2 |
skin sebaceous gland | 4.09e-11 | 2 |
sweat gland | 4.09e-11 | 2 |
sweat gland placode | 4.09e-11 | 2 |
sebaceous gland placode | 4.09e-11 | 2 |
neural crest-derived structure | 8.28e-09 | 10 |
neural crest | 8.28e-09 | 10 |
neural fold | 8.28e-09 | 10 |
Ontology term | p-value | n |
---|---|---|
anemia | 2.82e-21 | 1 |
islet cell tumor | 3.45e-21 | 1 |
endocrine pancreas cancer | 3.45e-21 | 1 |
pancreatic endocrine carcinoma | 3.45e-21 | 1 |
hematopoietic system disease | 2.47e-11 | 2 |
clear cell adenocarcinoma | 3.02e-11 | 2 |