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{{FFCP|DPIdataset=robustDPI|EntrezGene=54923|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=26016|TSSclassifier=S|UniProt=|association_with_transcript=-54bp_to_ENST00000494776_5end|coexpression_cluster_id=C55|description=CAGE_peak_9_at_LIME1_5end|id=chr20:62369494..62369503,+|ontology_enrichment_celltype=CL:0000181!3.57e-08!12;CL:0000417!3.57e-08!12;CL:0000668!3.57e-08!12;CL:0000414!3.57e-08!12;CL:0000412!3.57e-08!12;CL:0000182!3.57e-08!12;CL:0000791!1.40e-07!18;CL:0000789!1.40e-07!18;CL:0002420!1.40e-07!18;CL:0002419!1.40e-07!18;CL:0000790!1.40e-07!18;CL:0000084!1.68e-07!25;CL:0000827!1.68e-07!25;CL:0000838!3.99e-07!52;CL:0001024!4.25e-07!1;CL:0002127!5.69e-07!1;CL:0000914!5.69e-07!1;CL:0000911!5.69e-07!1;CL:0000814!5.69e-07!1;CL:0002042!5.69e-07!1;CL:0002039!5.69e-07!1;CL:0002040!5.69e-07!1;CL:0002041!5.69e-07!1;CL:0000542!5.79e-07!53;CL:0000051!5.79e-07!53|ontology_enrichment_celltype_v019=CL:0000182;2.03e-44;12|ontology_enrichment_celltype_v019_2=CL:0000182,2.03e-44,12;CL:0000223,1.02e-09,58|ontology_enrichment_development_v019=UBERON:0004161;3.23e-48;11!UBERON:0009497;6.18e-41;13!UBERON:0001041;3.58e-18;30!UBERON:0003104;2.02e-17;31!CL:0000223;2.10e-07;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:7;8.63e-09;39|ontology_enrichment_disease_v019_2=DOID:7,2.02e-08,39|ontology_enrichment_uberon=UBERON:0002107!9.33e-11!19;UBERON:0006925!9.33e-11!19;UBERON:0008836!9.33e-11!19;UBERON:0007499!9.88e-11!25;UBERON:0009856!2.78e-10!26;UBERON:0005057!2.95e-10!26;UBERON:0008835!3.34e-09!22;UBERON:0003894!3.34e-09!22;UBERON:0009854!8.94e-09!23;UBERON:0009497!5.06e-08!25;UBERON:0000015!5.06e-08!25;UBERON:0002423!5.06e-08!25;UBERON:0006235!5.06e-08!25;UBERON:0004161!5.06e-08!25;UBERON:0002368!2.24e-07!35;UBERON:0005172!4.08e-07!55;UBERON:0005173!4.08e-07!55|ontology_enrichment_uberon_v019=UBERON:0002107;1.26e-43;19!UBERON:0006925;1.26e-43;19!UBERON:0002423;2.47e-33;25!UBERON:0002365;5.55e-25;31!UBERON:0002330;5.55e-25;31!UBERON:0002368;5.62e-25;33!UBERON:0000949;1.33e-16;43!UBERON:0002530;2.41e-11;57!UBERON:0002417;3.96e-11;58!UBERON:0000916;3.96e-11;58!UBERON:0005172;4.70e-10;52!UBERON:0005173;4.70e-10;52|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.21e-43,19;UBERON:0006925,1.21e-43,19;UBERON:0008836,1.21e-43,19;UBERON:0008835,8.52e-38,22;UBERON:0003894,8.52e-38,22;UBERON:0009854,3.48e-36,23;UBERON:0007499,2.39e-33,25;UBERON:0009497,2.39e-33,25;UBERON:0000015,2.39e-33,25;UBERON:0002423,2.39e-33,25;UBERON:0006235,2.39e-33,25;UBERON:0004161,2.39e-33,25;UBERON:0009856,4.31e-32,26;UBERON:0002365,5.02e-27,31;UBERON:0002330,5.02e-27,31;UBERON:0002368,5.19e-24,35;UBERON:0000949,8.25e-19,45;UBERON:0003929,9.10e-16,54;UBERON:0005172,9.10e-16,54;UBERON:0005173,9.10e-16,54;UBERON:0002530,1.78e-14,59;UBERON:0002417,3.05e-14,60;UBERON:0000916,3.05e-14,60;UBERON:0005911,1.51e-10,82;UBERON:0001041,5.77e-10,87;UBERON:0005177,1.22e-08,101;UBERON:0009569,7.95e-08,112;UBERON:0003914,1.66e-07,117;UBERON:0004921,2.19e-07,118;UBERON:0005256,3.27e-07,122|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0,0.0787107813136792,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393419540227666,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0.130059347559878,0,0,0,0.14828656316206,0,0,0,0,0,0.253019692019503,0,0,0,0.150575119077773,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53510069643662,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224170287987055,0,0.215627574859517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.618246069886334,0,0,0,0,0,0,0,0.15350367472613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12972560932135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511572370226872,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6786281984456,2.55489160981616,2.76354529802158,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0.236417121897595,0.524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439656701034247,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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{{FFCP
|DHSsupport=supported 
|DPIdataset=robust
|EntrezGene=54923
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding
|HGNC=26016
|TSSclassifier=strong
|UniProt=
|association_with_transcript=-54bp_to_ENST00000494776_5end
|cluster_id=chr20:62369494..62369503,+
|coexpression_cluster_id=C55
|description=CAGE_peak_9_at_LIME1_5end
|id=chr20:62369494..62369503,+
|ontology_enrichment_celltype=CL:0000181!3.57e-08!12;CL:0000417!3.57e-08!12;CL:0000668!3.57e-08!12;CL:0000414!3.57e-08!12;CL:0000412!3.57e-08!12;CL:0000182!3.57e-08!12;CL:0000791!1.40e-07!18;CL:0000789!1.40e-07!18;CL:0002420!1.40e-07!18;CL:0002419!1.40e-07!18;CL:0000790!1.40e-07!18;CL:0000084!1.68e-07!25;CL:0000827!1.68e-07!25;CL:0000838!3.99e-07!52;CL:0001024!4.25e-07!1;CL:0002127!5.69e-07!1;CL:0000914!5.69e-07!1;CL:0000911!5.69e-07!1;CL:0000814!5.69e-07!1;CL:0002042!5.69e-07!1;CL:0002039!5.69e-07!1;CL:0002040!5.69e-07!1;CL:0002041!5.69e-07!1;CL:0000542!5.79e-07!53;CL:0000051!5.79e-07!53
|ontology_enrichment_celltype_v019=CL:0000182;2.03e-44;12
|ontology_enrichment_celltype_v019_2=CL:0000182,2.03e-44,12;CL:0000223,1.02e-09,58
|ontology_enrichment_development_v019=UBERON:0004161;3.23e-48;11!UBERON:0009497;6.18e-41;13!UBERON:0001041;3.58e-18;30!UBERON:0003104;2.02e-17;31!CL:0000223;2.10e-07;58
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019=DOID:7;8.63e-09;39
|ontology_enrichment_disease_v019_2=DOID:7,2.02e-08,39
|ontology_enrichment_uberon=UBERON:0002107!9.33e-11!19;UBERON:0006925!9.33e-11!19;UBERON:0008836!9.33e-11!19;UBERON:0007499!9.88e-11!25;UBERON:0009856!2.78e-10!26;UBERON:0005057!2.95e-10!26;UBERON:0008835!3.34e-09!22;UBERON:0003894!3.34e-09!22;UBERON:0009854!8.94e-09!23;UBERON:0009497!5.06e-08!25;UBERON:0000015!5.06e-08!25;UBERON:0002423!5.06e-08!25;UBERON:0006235!5.06e-08!25;UBERON:0004161!5.06e-08!25;UBERON:0002368!2.24e-07!35;UBERON:0005172!4.08e-07!55;UBERON:0005173!4.08e-07!55
|ontology_enrichment_uberon_v019=UBERON:0002107;1.26e-43;19!UBERON:0006925;1.26e-43;19!UBERON:0002423;2.47e-33;25!UBERON:0002365;5.55e-25;31!UBERON:0002330;5.55e-25;31!UBERON:0002368;5.62e-25;33!UBERON:0000949;1.33e-16;43!UBERON:0002530;2.41e-11;57!UBERON:0002417;3.96e-11;58!UBERON:0000916;3.96e-11;58!UBERON:0005172;4.70e-10;52!UBERON:0005173;4.70e-10;52
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.21e-43,19;UBERON:0006925,1.21e-43,19;UBERON:0008836,1.21e-43,19;UBERON:0008835,8.52e-38,22;UBERON:0003894,8.52e-38,22;UBERON:0009854,3.48e-36,23;UBERON:0007499,2.39e-33,25;UBERON:0009497,2.39e-33,25;UBERON:0000015,2.39e-33,25;UBERON:0002423,2.39e-33,25;UBERON:0006235,2.39e-33,25;UBERON:0004161,2.39e-33,25;UBERON:0009856,4.31e-32,26;UBERON:0002365,5.02e-27,31;UBERON:0002330,5.02e-27,31;UBERON:0002368,5.19e-24,35;UBERON:0000949,8.25e-19,45;UBERON:0003929,9.10e-16,54;UBERON:0005172,9.10e-16,54;UBERON:0005173,9.10e-16,54;UBERON:0002530,1.78e-14,59;UBERON:0002417,3.05e-14,60;UBERON:0000916,3.05e-14,60;UBERON:0005911,1.51e-10,82;UBERON:0001041,5.77e-10,87;UBERON:0005177,1.22e-08,101;UBERON:0009569,7.95e-08,112;UBERON:0003914,1.66e-07,117;UBERON:0004921,2.19e-07,118;UBERON:0005256,3.27e-07,122
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0,0.0787107813136792,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393419540227666,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0.130059347559878,0,0,0,0.14828656316206,0,0,0,0,0,0.253019692019503,0,0,0,0.150575119077773,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53510069643662,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224170287987055,0,0.215627574859517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.618246069886334,0,0,0,0,0,0,0,0.15350367472613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12972560932135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511572370226872,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6786281984456,2.55489160981616,2.76354529802158,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0.236417121897595,0.524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439656701034247,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243835849964539,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0
|short_description=p9@LIME1
}}

Latest revision as of 14:07, 17 September 2015

Short description:p9@LIME1
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): Yes
Description: CAGE_peak_9_at_LIME1_5end
Coexpression cluster:C55_hepatocellular_Intestinal_liver_Prostate_fibrosarcoma_Hepatocyte_hepatoblastoma
Association with transcript: -54bp_to_ENST00000494776_5end
EntrezGene:LIME1
HGNC: 26016
UniProt: NA
Genome view:ZENBU


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CAGE Expression



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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

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