FFCP PHASE1:Hg19::chr5:1201703..1201716,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=340024 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27960 | |||
|TSSclassifier=strong | |||
|UniProt=Q695T7,E9PD72 | |||
|association_with_transcript=0bp_to_ENST00000304460,ENST00000515652,NM_001003841,uc003jbw.3_5end | |||
|cluster_id=chr5:1201703..1201716,+ | |||
|coexpression_cluster_id=C25 | |||
|description=CAGE_peak_1_at_SLC6A19_5end | |||
|id=chr5:1201703..1201716,+ | |||
|ontology_enrichment_celltype=CL:0000039!9.39e-13!7;CL:0000586!9.39e-13!7;CL:0000764!2.22e-08!2;CL:0000765!2.22e-08!2;CL:0000050!2.22e-08!2;CL:0000038!2.22e-08!2;CL:0000558!2.22e-08!2;CL:0000547!2.22e-08!2;CL:0000549!2.22e-08!2;CL:0000550!2.22e-08!2;CL:0000552!2.22e-08!2 | |||
|ontology_enrichment_celltype_v019=CL:0000039;4.38e-15;7!CL:0000586;4.38e-15;7!CL:0000764;5.44e-14;2!CL:0000558;5.44e-14;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,4.23e-15,7;CL:0000586,4.23e-15,7;CL:0000764,5.44e-14,2;CL:0000765,5.44e-14,2;CL:0000050,5.44e-14,2;CL:0000038,5.44e-14,2;CL:0000558,5.44e-14,2;CL:0000547,5.44e-14,2;CL:0000549,5.44e-14,2;CL:0000550,5.44e-14,2;CL:0000552,5.44e-14,2 | |||
|ontology_enrichment_development_v019=UBERON:0006242;3.80e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1799;5.70e-08;1!DOID:10165;5.70e-08;1!DOID:1798;5.70e-08;1!DOID:8552;1.44e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,5.70e-08,1;DOID:10165,5.70e-08,1;DOID:1798,5.70e-08,1;DOID:8552,1.44e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0005409!5.02e-14!35;UBERON:0000160!1.88e-13!27;UBERON:0000059!5.37e-08!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;2.15e-17;22!UBERON:0000160;2.27e-17;17!UBERON:0002108;5.21e-13;4!UBERON:0004921;1.11e-10;33!UBERON:0000059;1.03e-09;11!UBERON:0001155;3.69e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.22e-17,17;UBERON:0005409,2.94e-15,25;UBERON:0002108,5.21e-13,4;UBERON:0000059,1.01e-09,11;UBERON:0001155,3.57e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,82.3203489503124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0.982827216677626,0,0,0.614942192715568,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0,0,0,0,0,0,1.47798971368783,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.23557592931584,7.32019262869721,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564862804660675,0,0,0,0,0,1.52927441428475,0,0.238231775457789,1.23408681925858,0,0.540031437238115,0.79312517629427,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,31.1814914762671,3.69262196843137,0,0,5.63948020351398,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0.520855522170466,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,0,58.3326678101792,4.21860928725929,8.36584763799462,0,0,0,0,0,2.49317522850235,0,0.19606253431774,0,0.948768663620925,3.33766815858795,0,0,0,0,3.98104772431402,192.041372536749,62.3250747832298,0,0,0,0,0,0,0,0,0,0,113.731273085744,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,90.5040697694855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.10250385391442,0,0,0,0,0,0,0,0,0,0,36.8022653087256,82.983158429567,0,0,0,0,0,0,0,0,0,0,0,0,0,0.732761168390412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781514011233092,35.6193104494735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280272163313789,3.65263488203798,0.215927591218621,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82876887473404,0,0,0,0.971421986118279,0,0,0,0,0,0,551.100663048833,317.785600972754,0,0,0,0,0,0,0,0,0.45120521581504,0,0,0,0,8.03370027071169,0,0,0,0,0,124.321307521119,0,0,0,0,0,0.126698501011437,0.407955318967927,0,5.69748377116038,0,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@SLC6A19 | |||
}} |
Latest revision as of 22:51, 19 September 2015
Short description: | p1@SLC6A19 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC6A19_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | 0bp_to_ENST00000304460, ENST00000515652, NM_001003841, uc003jbw.3_5end |
EntrezGene: | SLC6A19 |
HGNC: | 27960 |
UniProt: | Q695T7E9PD72 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 4.23e-15 | 7 |
germ cell | 4.23e-15 | 7 |
erythroid lineage cell | 5.44e-14 | 2 |
erythroblast | 5.44e-14 | 2 |
megakaryocyte-erythroid progenitor cell | 5.44e-14 | 2 |
erythroid progenitor cell | 5.44e-14 | 2 |
reticulocyte | 5.44e-14 | 2 |
proerythroblast | 5.44e-14 | 2 |
basophilic erythroblast | 5.44e-14 | 2 |
polychromatophilic erythroblast | 5.44e-14 | 2 |
orthochromatic erythroblast | 5.44e-14 | 2 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.22e-17 | 17 |
gastrointestinal system | 2.94e-15 | 25 |
small intestine | 5.21e-13 | 4 |
large intestine | 1.01e-09 | 11 |
colon | 3.57e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 5.70e-08 | 1 |
endocrine pancreas cancer | 5.70e-08 | 1 |
pancreatic endocrine carcinoma | 5.70e-08 | 1 |
chronic myeloid leukemia | 1.44e-07 | 1 |