Template:Known motif: Difference between revisions
From FANTOM5_SSTAR
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<html> | <html> | ||
<style type="text/css" title="currentStyle"> | <style type="text/css" title="currentStyle"> | ||
@import "/ | @import "/5/sstar/rb_js/datatables/media/css/jquery.dataTables.css"; | ||
@import "/ | @import "/5/sstar/rb_js/datatables/extras/TableTools/media/css/TableTools.css"; | ||
</style> | </style> | ||
<script type="text/javascript" src="/ | <script type="text/javascript" src="/5/sstar/rb_js/datatables/media/js/jquery.dataTables.min.js"></script> | ||
<script type="text/javascript" src="/ | <script type="text/javascript" src="/5/sstar/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script> | ||
<style type="text/css"> | <style type="text/css"> | ||
#wrap{ | #wrap{ | ||
| Line 111: | Line 111: | ||
"sScrollY": "500px", | "sScrollY": "500px", | ||
"bScrollCollapse": true, | "bScrollCollapse": true, | ||
"iDisplayLength": 5, | |||
"aLengthMenu": [[5, 10, -1], [5, 10, "All"]], | |||
"bPaginate": true, | "bPaginate": true, | ||
"bFilter": true, | "bFilter": true, | ||
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if(motif_db== "JASPAR"){ | if(motif_db== "JASPAR"){ | ||
sReturn =motif_db+"_motif:"+motif_id; | sReturn =motif_db+"_motif:"+motif_id; | ||
return '<a href=/ | return '<a href=/5/sstar/'+sReturn+'>'+motif_id+'</a>'; | ||
}else | }else | ||
{ | { | ||
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$('.dataTables_scrollBody').css("resize", "vertical"); | $('.dataTables_scrollBody').css("resize", "vertical"); | ||
motif_table_tools = new TableTools( motif_table, {"sSwfPath": "/ | motif_table_tools = new TableTools( motif_table, {"sSwfPath": "/5/sstar/rb_js/datatables/extras/TableTools/media/swf/copy_csv_xls_pdf.swf", "aButtons": [ {"sExtends": "copy", "mColumns": "visible"}, {"sExtends": "csv", "mColumns": "visible"}, {"sExtends": "pdf", "mColumns": "visible"} ]}); | ||
$('#motif_export_tool').before( motif_table_tools.dom.container ); | $('#motif_export_tool').before( motif_table_tools.dom.container ); | ||
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var uri = decodeURIComponent(motif_id); | var uri = decodeURIComponent(motif_id); | ||
return '<a class="" href="/ | return '<a class="" href="/5/sstar/seqlogos/'+tmp+"/"+ uri + '.png"><img src="/5/sstar/seqlogos/'+tmp+"/"+ uri +'.png" width="80px" height="26px" border="0"/></a>'; | ||
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* name :[[motifname::{{{representative_motif_name}}}]] | * name :[[motifname::{{{representative_motif_name}}}]] | ||
* score :[[motifscore::{{{score}}}]]<br> | * score :[[motifscore::{{{score}}}]]<br> | ||
* External refs: | * External refs: {{#arraymap:{{{entrez_gene_id}}}|,|$| | ||
{{#arraymap:{{{entrez_gene_id}}}|,|$| | |||
<span> | <span> | ||
:[http://www.ncbi.nlm.nih.gov/gene?term=$ EntrezGene:[[GeneID::$]]]<html><br></html>[http://www.uniprot.org/uniprot/?query=$ UniProt:$] | :[http://www.ncbi.nlm.nih.gov/gene?term=$ EntrezGene:[[GeneID::$]]]<html><br></html>[http://www.uniprot.org/uniprot/?query=$ UniProt:$] | ||
| Line 236: | Line 237: | ||
|}} | |}} | ||
* Internal refs: | * Internal refs: {{#arraymap:{{{entrez_gene_id}}}|,|$| | ||
{{#arraymap:{{{entrez_gene_id}}}|,|$| | |||
<span> | <span> | ||
:[[EntrezGene:$]]<html><br></html> | :[[EntrezGene:$]]<html><br></html> | ||
| Line 260: | Line 260: | ||
} | } | ||
var tmp ="/ | var tmp ="/5/sstar/seqlogos/"+ "known_motifs"+"_201304"+"/"+motif_id.toLowerCase()+".png"; | ||
var uri = encodeURI(tmp); | var uri = encodeURI(tmp); | ||
return number_prefix='<img src="'+uri+'" id="pic" width ="310" height = "100">' | return number_prefix='<img src="'+uri+'" id="pic" width ="310" height = "100">' | ||
Latest revision as of 15:19, 24 August 2015
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :{{{name}}}
- db :{{{representative_motif_db}}}
- Id :{{{representative_motif_id}}}
- name :{{{representative_motif_name}}}
- score :{{{score}}}
- External refs:
- Internal refs:
- [[EntrezGene:{{{entrez_gene_id}}}]]
| Motif matrix | |
|---|---|
|
Sub Motif Members
