Personal tools

Template:TimeCourse: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
mNo edit summary
No edit summary
 
(97 intermediate revisions by 3 users not shown)
Line 1: Line 1:
{{Loading|loadingimage=sprites.gif}}<html>
{{Loading|loadingimage=sprites.gif}}
<style type="text/css" title="currentStyle">
{{#set:id={{{id}}}}}
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
<table>
<tr><th scope="row" align="right">Series:</th><td>{{{series}}}</td></tr>
<tr><th scope="row" align="right">Species:</th><td>{{{species}}}</td></tr>
<tr><th scope="row" align="right">Genomic View:</th><td><span class="plainlinks">[{{{zenbu_config}}} Zenbu]</span></td></tr>
<tr><th scope="row" align="right">Expression table:</th><td><span class="plainlinks">[{{{tet_config}}} FILE]</span></td></tr>
<tr><th scope="row" align="right">Link to TET:</th><td><span class="plainlinks">[{{{tet_file}}} TET]</span></td></tr>
<tr><th scope="row" align="right">Sample providers :</th><td>{{{collaborators}}}</td></tr>
<tr><th scope="row" align="right">Germ layer:</th><td>{{{germ_layer}}}</td></tr>
<tr><th scope="row" align="right">Primary cells or cell line:</th><td>{{{primary_cells}}}</td></tr>
<tr><th scope="row" align="right">Time span:</th><td>{{{time_span}}}</td></tr>
<tr><th scope="row" align="right">Number of time points:</th><td>{{{number_time_points}}}</td></tr>
</table><br>
<!--Timecourse Overview table start -->
{|class="wikitable mw-collapsible" style="width:auto"
! Overview
|-
|
{{{TCOverview}}}
|}<!-- Timecourse Overview table end -->
<!--Timecourse sample description table start -->
{|class="wikitable mw-collapsible mw-collapsed" style="width:auto"
! Sample description
|-
|
{{{TCSample_description}}}
|}<!-- Timecourse sample description table end -->
<!--Quality control table start -->
{|class="wikitable mw-collapsible mw-collapsed" style="width:auto"
! Quality control
|-
|
{{{TCQuality_control}}}
|}<!-- Quality control table end -->
 
<p>{{Fontsize|3|Profiled time course samples}}</p>
<p>{{Fontsize|1|Only samples that passed quality controls (Arner et al. 2015) are shown here. The entire set of samples are downloadable from FANTOM5  [[Browse_samples|human ]] / [[Browse_samples_mm9|mouse samples]]}}</p>
----
<br>
<html>
<style type="text/css" title="currentStyle">
@import "/5/sstar/rb_js/html5button/datatables.css";
@import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
@import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";


Line 20: Line 60:
}
}
</style>
</style>
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/jquery-1.7.1.min.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/custom/convert.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/custom/convert.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
<script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.min.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
<script type="text/javascript">
$(document).ready(function() {
    var oTable =  $('.cl_list').DataTable({
        dom: 'Blfrtip',
lengthMenu: [[-1], ["All"]],
        buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
        columns: [{title: "Sample"},{title: "Name"},{title: "Time point"},{title: "Donor/Replica"}]
});
} );
</script>
<span id="export_tool"></span>
</html>
</html>
{{#set:id={{{id}}}}}
{{#ask:[[Category:FF Samples]][[timecourse::{{PAGENAME}}]]
<table>
|?name=Name
<tr><th scope="row" align="right">Description:</th><td>[[description::{{{description}}}]]</td></tr>
|?Time=Time point
<tr><th scope="row" align="right">[[Property:series|Series]]:</th><td>[[series::{{{series}}}]]</td></tr>
|?Donor=Donor/Replica
<tr><th scope="row" align="right">[[Property:species|Species]]:</th><td>{{{species}}}</td></tr>
|format=table
<tr><th scope="row" align="right">Status:</th><td>{{{status}}}</td></tr>
|class=cl_list stripe cell-border order-column compact
<tr><th scope="row" align="right">Genomic View:</th><td>[{{{zenbu_config}}}] </td></tr>
|limit=2000
<tr><th scope="row" align="right">Collaborators:</th><td>[{{{collaborators}}}] </td></tr>
|searchlabel=
</table>
|mainlabel=Sample
{{#arraymap:{{{samples}}}|,|$|[[{{#set:sample=$}}]]}}
|headers=hide
}}
{{#arraymap:{{{samples|}}}|,|$|{{#set:sample=[[FF:$]]}}}}
{{#set:species={{{species}}}}}
{{#set:description={{{description}}}}}
{{#set:series={{{series}}}}}
{{#set:status={{{status|}}}}}
{{#set:collaborators={{{collaborators}}}}}
{{#set:tissue_cell_type={{{tissue_cell_type}}}}}
{{#set:category_treatment={{{category_treatment}}}}}
{{#set:timepoint_design={{{timepoint_design}}}}}
[[Category:Time Courses]]
[[Category:Time Courses]]

Latest revision as of 10:57, 15 March 2022

Series:{{{series}}}
Species:{{{species}}}
Genomic View:[{{{zenbu_config}}} Zenbu]
Expression table:[{{{tet_config}}} FILE]
Link to TET:[{{{tet_file}}} TET]
Sample providers :{{{collaborators}}}
Germ layer:{{{germ_layer}}}
Primary cells or cell line:{{{primary_cells}}}
Time span:{{{time_span}}}
Number of time points:{{{number_time_points}}}


Overview

{{{TCOverview}}}

Sample description

{{{TCSample_description}}}

Quality control

{{{TCQuality_control}}}

Profiled time course samples

Only samples that passed quality controls (Arner et al. 2015) are shown here. The entire set of samples are downloadable from FANTOM5 human / mouse samples





Property "Series" (as page type) with input value "{{{series}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Property "Collaborators" (as page type) with input value "{{{collaborators}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.