Personal tools

Template:TimeCourse: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(69 intermediate revisions by 3 users not shown)
Line 2: Line 2:
{{#set:id={{{id}}}}}
{{#set:id={{{id}}}}}
<table>
<table>
<tr><th scope="row" align="right">Description:</th><td>[[description::{{{description}}}]]</td></tr>
<tr><th scope="row" align="right">Series:</th><td>{{{series}}}</td></tr>
<tr><th scope="row" align="right">[[Property:series|Series]]:</th><td>{{{series}}}</td></tr>
<tr><th scope="row" align="right">Species:</th><td>{{{species}}}</td></tr>
<tr><th scope="row" align="right">[[Property:species|Species]]:</th><td>{{{species}}}</td></tr>
<tr><th scope="row" align="right">Genomic View:</th><td><span class="plainlinks">[{{{zenbu_config}}} Zenbu]</span></td></tr>
<tr><th scope="row" align="right">Status:</th><td>{{{status}}}</td></tr>
<tr><th scope="row" align="right">Expression table:</th><td><span class="plainlinks">[{{{tet_config}}} FILE]</span></td></tr>
<tr><th scope="row" align="right">Genomic View:</th><td>[{{{zenbu_config}}} Zenbu] </td></tr>
<tr><th scope="row" align="right">Link to TET:</th><td><span class="plainlinks">[{{{tet_file}}} TET]</span></td></tr>
<tr><th scope="row" align="right">Collaborators:</th><td>{{{collaborators}}} </td></tr>
<tr><th scope="row" align="right">Sample providers :</th><td>{{{collaborators}}}</td></tr>
</table><br><br>
<tr><th scope="row" align="right">Germ layer:</th><td>{{{germ_layer}}}</td></tr>
{{Fontsize|3|Profiled time course samples}}
<tr><th scope="row" align="right">Primary cells or cell line:</th><td>{{{primary_cells}}}</td></tr>
<tr><th scope="row" align="right">Time span:</th><td>{{{time_span}}}</td></tr>
<tr><th scope="row" align="right">Number of time points:</th><td>{{{number_time_points}}}</td></tr>
</table><br>
<!--Timecourse Overview table start -->
{|class="wikitable mw-collapsible" style="width:auto"
! Overview
|-
|
{{{TCOverview}}}
|}<!-- Timecourse Overview table end -->
<!--Timecourse sample description table start -->
{|class="wikitable mw-collapsible mw-collapsed" style="width:auto"
! Sample description
|-
|
{{{TCSample_description}}}
|}<!-- Timecourse sample description table end -->
<!--Quality control table start -->
{|class="wikitable mw-collapsible mw-collapsed" style="width:auto"
! Quality control
|-
|
{{{TCQuality_control}}}
|}<!-- Quality control table end -->
 
<p>{{Fontsize|3|Profiled time course samples}}</p>
<p>{{Fontsize|1|Only samples that passed quality controls (Arner et al. 2015) are shown here. The entire set of samples are downloadable from FANTOM5  [[Browse_samples|human ]] / [[Browse_samples_mm9|mouse samples]]}}</p>
----
----
<br>
<br>
<html>
<html>
<style type="text/css" title="currentStyle">
<style type="text/css" title="currentStyle">
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
@import "/5/sstar/rb_js/html5button/datatables.css";
@import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
@import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";


Line 33: Line 60:
}
}
</style>
</style>
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/jquery-1.7.1.min.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/custom/convert.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/custom/convert.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
<script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.min.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
<script type="text/javascript">
<script type="text/javascript">


$(document).ready(function() {
$(document).ready(function() {
     var oTable =  $('.cl_list').dataTable({
     var oTable =  $('.cl_list').DataTable({
"iDisplayLength": 10,
        dom: 'Blfrtip',
"aLengthMenu": [[15, -1], [15, "All"]],
lengthMenu: [[-1], ["All"]],
// "aoColumnDefs": [ { "sWidth": "100px", "aTargets": [0] }, { "sWidth": "60%", "aTargets": [1] }, { "bVisible": false, "aTargets": [ 3 ] }, { "sWidth": "150px", "aTargets": [2] }],
        buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
});
        columns: [{title: "Sample"},{title: "Name"},{title: "Time point"},{title: "Donor/Replica"}]
 
});
var oTableTools = new TableTools( oTable, {"sSwfPath": "/resource_browser/rb_js/datatables/extras/TableTools/media/swf/copy_csv_xls_pdf.swf", "aButtons": [ {"sExtends": "copy", "mColumns": "visible"}, {"sExtends": "csv", "mColumns": "visible"}, {"sExtends": "pdf", "mColumns": "visible"} ]});
 
$('#export_tool').before( oTableTools.dom.container );
 
 
} );
} );
</script>
</script>
Line 56: Line 79:
{{#ask:[[Category:FF Samples]][[timecourse::{{PAGENAME}}]]
{{#ask:[[Category:FF Samples]][[timecourse::{{PAGENAME}}]]
|?name=Name
|?name=Name
|format=ttable
|?Time=Time point
|class=cl_list
|?Donor=Donor/Replica
|format=table
|class=cl_list stripe cell-border order-column compact
|limit=2000
|limit=2000
|searchlabel=
|searchlabel=
|mainlabel=Sample
|mainlabel=Sample
|headers=hide
}}
}}
{{#arraymap:{{{samples}}}|,|$|{{#set:sample=[[FF:$]]}}}}
{{#arraymap:{{{samples|}}}|,|$|{{#set:sample=[[FF:$]]}}}}
{{#set:species={{{species}}}}}
{{#set:species={{{species}}}}}
{{#set:description={{{description}}}}}
{{#set:description={{{description}}}}}
{{#set:series={{{series}}}}}
{{#set:series={{{series}}}}}
{{#set:status={{{status}}}}}
{{#set:status={{{status|}}}}}
{{#set:collaborators={{{collaborators}}}}}
{{#set:collaborators={{{collaborators}}}}}
{{#set:tissue_cell_type={{{tissue_cell_type}}}}}
{{#set:category_treatment={{{category_treatment}}}}}
{{#set:timepoint_design={{{timepoint_design}}}}}
[[Category:Time Courses]]
[[Category:Time Courses]]

Latest revision as of 10:57, 15 March 2022

Series:{{{series}}}
Species:{{{species}}}
Genomic View:[{{{zenbu_config}}} Zenbu]
Expression table:[{{{tet_config}}} FILE]
Link to TET:[{{{tet_file}}} TET]
Sample providers :{{{collaborators}}}
Germ layer:{{{germ_layer}}}
Primary cells or cell line:{{{primary_cells}}}
Time span:{{{time_span}}}
Number of time points:{{{number_time_points}}}


Overview

{{{TCOverview}}}

Sample description

{{{TCSample_description}}}

Quality control

{{{TCQuality_control}}}

Profiled time course samples

Only samples that passed quality controls (Arner et al. 2015) are shown here. The entire set of samples are downloadable from FANTOM5 human / mouse samples




Property "Series" (as page type) with input value "{{{series}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Property "Collaborators" (as page type) with input value "{{{collaborators}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Template:TimeCourse&oldid=4578817"