UBERON:0000014: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=zone of skin | |name=zone of skin | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002097 | |part_of=UBERON:0002097 | ||
Latest revision as of 17:04, 12 September 2014
| Name: | zone of skin | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A sub-region of the skin. Note the distinct between the entire skin of the body, of which there is only 1 in an organism, and zones of skin, of which there can be many. Examples: skin of knee" [GOC:cjm, Wikipedia:Skin] | ||
| Xrefs: |
| ||
| Synonyms: |
"portion of skin" EXACT [] "region of skin" EXACT [] "skin" EXACT [MA:0000151] "skin region" EXACT [] "skin zone" EXACT [] | ||
| Comments: | we assume that mouse, HOG and GAID all mean zone of skin when they say skin. We also choose skin as an exact synonym, as it is more intuitive |
200px-Skin.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000064(organ part),UBERON:0004121(ectoderm-derived structure) |
|---|---|
| part_of: | UBERON:0002097(skin of body) |
Children
| is a: | UBERON:0001419 (skin of limb),FF:0011174 (Skin - armpit hair follicle),FF:0011178 (Skin - torso),FF:0103765 (dermatofibroma cell line),FF:10702-109G9 (basal cell carcinoma cell line:TE 354.T),FF:10713-109I2 (),FF:10791-110H8 (keratoacanthoma cell line:HKA-1) |
|---|---|
| derives from: | FF:0010065 (human skin - fetal sample),FF:0010074 (human skin - adult sample),FF:0011308 (mouse skin- adult sample),FF:0011397 (mouse skin- neonate N00 sample),FF:0011400 (mouse skin- neonate N03 sample),FF:0011406 (mouse skin- neonate N06 sample),FF:0011421 (mouse skin- neonate N10 sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10065-101I2 (skin, fetal, donor1)
- 10074-102A2 (skin, adult, donor1)
- 10283-104F4
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10287-104F8
- 10311-104I5
- 10313-104I7
- 10314-104I8
- 10315-104I9
... further results Mouse (Mus musculus)
- 10065-101I2 (skin, fetal, donor1)
- 10074-102A2 (skin, adult, donor1)
- 10283-104F4
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10287-104F8
- 10311-104I5
- 10313-104I7
- 10314-104I8
- 10315-104I9
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000014 (zone of skin), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.4e-86 | FFCP PHASE2:Mm9::chr11:36246521..36246530,-#_3815306e404cc02768d638d2ad371b97 | p@chr11:36246521..36246530, - |
| 1.4e-86 | FFCP PHASE1:Mm9::chr5:137057540..137057550,-#_3815306e404cc02768d638d2ad371b97 | p@chr5:137057540..137057550, - |
| 1.4e-86 | FFCP PHASE1:Mm9::chr4:113836063..113836075,+#_3815306e404cc02768d638d2ad371b97 | p1@Skint11 |
| 1.4e-86 | FFCP PHASE2:Mm9::chr11:94981134..94981147,+#_3815306e404cc02768d638d2ad371b97 | p2@Dlx3 |
| 1.4e-86 | FFCP PHASE1:Mm9::chr1:191609138..191609151,+#_3815306e404cc02768d638d2ad371b97 | p@chr1:191609138..191609151, + |
| 1.4e-86 | FFCP PHASE1:Mm9::chr11:94981134..94981147,+#_3815306e404cc02768d638d2ad371b97 | p2@Dlx3 |
| 1.4e-86 | FFCP PHASE2:Mm9::chr4:113836042..113836053,+#_3815306e404cc02768d638d2ad371b97 | p2@Skint11 |
| 1.4e-86 | FFCP PHASE2:Mm9::chr15:101593988..101593997,-#_3815306e404cc02768d638d2ad371b97 | p1@Krt74 |
| 1.4e-86 | FFCP PHASE1:Mm9::chr11:99227413..99227429,-#_3815306e404cc02768d638d2ad371b97 | p@chr11:99227413..99227429, - |
| 1.4e-86 | FFCP PHASE1:Mm9::chr15:101593988..101593997,-#_3815306e404cc02768d638d2ad371b97 | p1@Krt74 |
| 1.4e-86 | FFCP PHASE2:Mm9::chr5:137057540..137057550,-#_3815306e404cc02768d638d2ad371b97 | p@chr5:137057540..137057550, - |
| 1.4e-86 | FFCP PHASE2:Mm9::chr4:138313406..138313411,-#_3815306e404cc02768d638d2ad371b97 | p2@Pla2g2f |
| 1.4e-86 | FFCP PHASE2:Mm9::chr11:99227413..99227429,-#_3815306e404cc02768d638d2ad371b97 | p@chr11:99227413..99227429, - |
| 1.4e-86 | FFCP PHASE2:Mm9::chr4:113836063..113836075,+#_3815306e404cc02768d638d2ad371b97 | p1@Skint11 |
| 1.4e-86 | FFCP PHASE1:Mm9::chr13:113381448..113381495,-#_3815306e404cc02768d638d2ad371b97 | p@chr13:113381448..113381495, - |
| 1.4e-86 | FFCP PHASE2:Mm9::chr13:113381448..113381495,-#_3815306e404cc02768d638d2ad371b97 | p@chr13:113381448..113381495, - |
| 1.4e-86 | FFCP PHASE1:Mm9::chr4:113836042..113836053,+#_3815306e404cc02768d638d2ad371b97 | p2@Skint11 |
| 1.4e-86 | FFCP PHASE1:Mm9::chr11:36246521..36246530,-#_3815306e404cc02768d638d2ad371b97 | p@chr11:36246521..36246530, - |
| 1.4e-86 | FFCP PHASE2:Mm9::chr1:191609138..191609151,+#_3815306e404cc02768d638d2ad371b97 | p@chr1:191609138..191609151, + |
| 1.4e-86 | FFCP PHASE1:Mm9::chr4:138313406..138313411,-#_3815306e404cc02768d638d2ad371b97 | p2@Pla2g2f |
| 1.07e-72 | FFCP PHASE2:Mm9::chr1:46949894..46949911,-#_8adb6cd5cf4b280d09cce420750d0e5b | p@chr1:46949894..46949911, - |
| 1.07e-72 | FFCP PHASE2:Mm9::chr7:127260268..127260277,+#_8adb6cd5cf4b280d09cce420750d0e5b | p@chr7:127260268..127260277, + |
| 1.07e-72 | FFCP PHASE1:Mm9::chr3:90343597..90343613,+#_8adb6cd5cf4b280d09cce420750d0e5b | p@chr3:90343597..90343613, + |
| 1.07e-72 | FFCP PHASE2:Mm9::chr7:97432305..97432311,+#_8adb6cd5cf4b280d09cce420750d0e5b | p@chr7:97432305..97432311, + |
| 1.07e-72 | FFCP PHASE1:Mm9::chr7:97432305..97432311,+#_8adb6cd5cf4b280d09cce420750d0e5b | p@chr7:97432305..97432311, + |
| 1.07e-72 | FFCP PHASE1:Mm9::chr7:127260268..127260277,+#_8adb6cd5cf4b280d09cce420750d0e5b | p@chr7:127260268..127260277, + |
| 1.07e-72 | FFCP PHASE2:Mm9::chr1:133938531..133938534,-#_8adb6cd5cf4b280d09cce420750d0e5b | p6@Mfsd4 |
| 1.07e-72 | FFCP PHASE2:Mm9::chr3:90343597..90343613,+#_8adb6cd5cf4b280d09cce420750d0e5b | p@chr3:90343597..90343613, + |
| 1.07e-72 | FFCP PHASE1:Mm9::chr5:137057441..137057450,-#_8adb6cd5cf4b280d09cce420750d0e5b | p@chr5:137057441..137057450, - |
| 1.07e-72 | FFCP PHASE1:Mm9::chr11:99207849..99207853,-#_8adb6cd5cf4b280d09cce420750d0e5b | p@chr11:99207849..99207853, - |
| 1.07e-72 | FFCP PHASE2:Mm9::chr5:137057441..137057450,-#_8adb6cd5cf4b280d09cce420750d0e5b | p@chr5:137057441..137057450, - |
| 1.07e-72 | FFCP PHASE2:Mm9::chr15:83953604..83953633,-#_8adb6cd5cf4b280d09cce420750d0e5b | p1@Pnpla5 |
| 1.07e-72 | FFCP PHASE2:Mm9::chr11:99207849..99207853,-#_8adb6cd5cf4b280d09cce420750d0e5b | p@chr11:99207849..99207853, - |
| 1.07e-72 | FFCP PHASE1:Mm9::chr5:137057490..137057506,-#_8adb6cd5cf4b280d09cce420750d0e5b | p@chr5:137057490..137057506, - |
| 1.07e-72 | FFCP PHASE1:Mm9::chr1:133938531..133938534,-#_8adb6cd5cf4b280d09cce420750d0e5b | p6@Mfsd4 |
| 1.07e-72 | FFCP PHASE2:Mm9::chr5:137057490..137057506,-#_8adb6cd5cf4b280d09cce420750d0e5b | p@chr5:137057490..137057506, - |
| 1.07e-72 | FFCP PHASE1:Mm9::chr1:46949894..46949911,-#_8adb6cd5cf4b280d09cce420750d0e5b | p@chr1:46949894..46949911, - |
| 1.07e-72 | FFCP PHASE1:Mm9::chr15:83953604..83953633,-#_8adb6cd5cf4b280d09cce420750d0e5b | p1@Pnpla5 |
| 1.5e-72 | FFCP PHASE1:Mm9::chr1:37973257..37973271,-#_526f83c7d6b6d3f97bfb1c5d1527af2f | p2@Lyg2 |
| 1.5e-72 | FFCP PHASE2:Mm9::chr3:138004932..138004945,+#_526f83c7d6b6d3f97bfb1c5d1527af2f | p@chr3:138004932..138004945, + |
| 1.5e-72 | FFCP PHASE1:Mm9::chr1:37973330..37973344,-#_526f83c7d6b6d3f97bfb1c5d1527af2f | p1@Lyg2 |
| 1.5e-72 | FFCP PHASE1:Mm9::chr13:112045218..112045226,+#_526f83c7d6b6d3f97bfb1c5d1527af2f | p1@Actbl2 |
| 1.5e-72 | FFCP PHASE2:Mm9::chr13:112045218..112045226,+#_526f83c7d6b6d3f97bfb1c5d1527af2f | p1@Actbl2 |
| 1.5e-72 | FFCP PHASE1:Mm9::chr15:25672069..25672077,+#_526f83c7d6b6d3f97bfb1c5d1527af2f | p25@Myo10 |
| 1.5e-72 | FFCP PHASE2:Mm9::chr6:97778311..97778326,+#_526f83c7d6b6d3f97bfb1c5d1527af2f | p@chr6:97778311..97778326, + |
| 1.5e-72 | FFCP PHASE2:Mm9::chr6:134595955..134595965,-#_526f83c7d6b6d3f97bfb1c5d1527af2f | p@chr6:134595955..134595965, - |
| 1.5e-72 | FFCP PHASE1:Mm9::chr3:138004932..138004945,+#_526f83c7d6b6d3f97bfb1c5d1527af2f | p@chr3:138004932..138004945, + |
| 1.5e-72 | FFCP PHASE1:Mm9::chr6:134595955..134595965,-#_526f83c7d6b6d3f97bfb1c5d1527af2f | p@chr6:134595955..134595965, - |
| 1.5e-72 | FFCP PHASE1:Mm9::chr6:97778311..97778326,+#_526f83c7d6b6d3f97bfb1c5d1527af2f | p@chr6:97778311..97778326, + |
| 1.5e-72 | FFCP PHASE1:Mm9::chr10:43724117..43724131,-#_526f83c7d6b6d3f97bfb1c5d1527af2f | p@chr10:43724117..43724131, - |
| 1.5e-72 | FFCP PHASE2:Mm9::chr1:37973257..37973271,-#_526f83c7d6b6d3f97bfb1c5d1527af2f | p2@Lyg2 |
| 1.5e-72 | FFCP PHASE2:Mm9::chr10:43724117..43724131,-#_526f83c7d6b6d3f97bfb1c5d1527af2f | p@chr10:43724117..43724131, - |
| 1.5e-72 | FFCP PHASE2:Mm9::chr15:25672069..25672077,+#_526f83c7d6b6d3f97bfb1c5d1527af2f | p25@Myo10 |
| 1.5e-72 | FFCP PHASE1:Mm9::chr10:66991117..66991146,+#_526f83c7d6b6d3f97bfb1c5d1527af2f | p@chr10:66991117..66991146, + |
| 1.5e-72 | FFCP PHASE2:Mm9::chr1:37973330..37973344,-#_526f83c7d6b6d3f97bfb1c5d1527af2f | p1@Lyg2 |
| 1.5e-72 | FFCP PHASE2:Mm9::chr10:66991117..66991146,+#_526f83c7d6b6d3f97bfb1c5d1527af2f | p@chr10:66991117..66991146, + |
| 2.1e-72 | FFCP PHASE2:Mm9::chr1:89485356..89485361,+#_93c2ce2883610c70219af0064a8c6bb4 | p@chr1:89485356..89485361, + |
| 2.1e-72 | FFCP PHASE1:Mm9::chr4:111707315..111707319,+#_93c2ce2883610c70219af0064a8c6bb4 | p@chr4:111707315..111707319, + |
| 2.1e-72 | FFCP PHASE2:Mm9::chr4:82496625..82496637,-#_93c2ce2883610c70219af0064a8c6bb4 | p6@Zdhhc21 |
| 2.1e-72 | FFCP PHASE1:Mm9::chr7:117436977..117436981,-#_93c2ce2883610c70219af0064a8c6bb4 | p@chr7:117436977..117436981, - |
| 2.1e-72 | FFCP PHASE1:Mm9::chr4:82496625..82496637,-#_93c2ce2883610c70219af0064a8c6bb4 | p6@Zdhhc21 |
| 2.1e-72 | FFCP PHASE2:Mm9::chr4:111707315..111707319,+#_93c2ce2883610c70219af0064a8c6bb4 | p@chr4:111707315..111707319, + |
| 2.1e-72 | FFCP PHASE1:Mm9::chr1:89485356..89485361,+#_93c2ce2883610c70219af0064a8c6bb4 | p@chr1:89485356..89485361, + |
| 2.1e-72 | FFCP PHASE2:Mm9::chr7:117436977..117436981,-#_93c2ce2883610c70219af0064a8c6bb4 | p@chr7:117436977..117436981, - |
| 4.13e-72 | FFCP PHASE1:Mm9::chr4:113672105..113672116,-#_87f484d437a2cfb1c620866f9472d28f | p1@Skint5 |
| 4.13e-72 | FFCP PHASE2:Mm9::chr4:113672105..113672116,-#_87f484d437a2cfb1c620866f9472d28f | p1@Skint5 |
| 1.65e-69 | FFCP PHASE2:Mm9::chr19:59989963..59989986,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p@chr19:59989963..59989986, - |
| 1.65e-69 | FFCP PHASE1:Mm9::chr16:56831943..56831948,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p14@Tmem45a |
| 1.65e-69 | FFCP PHASE2:Mm9::chr11:115168521..115168541,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p1@Otop2 |
| 1.65e-69 | FFCP PHASE2:Mm9::chr19:25196775..25196781,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p@chr19:25196775..25196781, + |
| 1.65e-69 | FFCP PHASE2:Mm9::chr3:93248809..93248818,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p@chr3:93248809..93248818, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr14:57868950..57868959,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p@chr14:57868950..57868959, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr11:95086849..95086855,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p3@ENSMUST00000150818 |
| 1.65e-69 | FFCP PHASE1:Mm9::chr3:93248809..93248818,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p@chr3:93248809..93248818, + |
| 1.65e-69 | FFCP PHASE2:Mm9::chr15:101770858..101770865,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p2@Krt79 |
| 1.65e-69 | FFCP PHASE2:Mm9::chr14:21082655..21082682,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p@chr14:21082655..21082682, - |
| 1.65e-69 | FFCP PHASE2:Mm9::chr2:129949046..129949050,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p2@Tgm6 |
| 1.65e-69 | FFCP PHASE2:Mm9::chr4:57351817..57351823,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p@chr4:57351817..57351823, - |
| 1.65e-69 | FFCP PHASE1:Mm9::chr3:93248462..93248471,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p@chr3:93248462..93248471, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr9:67169769..67169780,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p@chr9:67169769..67169780, - |
| 1.65e-69 | FFCP PHASE1:Mm9::chr1:192537956..192537958,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p@chr1:192537956..192537958, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr1:129125186..129125194,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p@chr1:129125186..129125194, + |
| 1.65e-69 | FFCP PHASE2:Mm9::chr5:75107109..75107125,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p@chr5:75107109..75107125, - |
| 1.65e-69 | FFCP PHASE1:Mm9::chr1:46949977..46949981,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p@chr1:46949977..46949981, - |
| 1.65e-69 | FFCP PHASE2:Mm9::chr1:129125186..129125194,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p@chr1:129125186..129125194, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr4:57351817..57351823,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p@chr4:57351817..57351823, - |
| 1.65e-69 | FFCP PHASE2:Mm9::chr9:43876286..43876293,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p@chr9:43876286..43876293, + |
| 1.65e-69 | FFCP PHASE2:Mm9::chr5:81472249..81472294,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p@chr5:81472249..81472294, + |
| 1.65e-69 | FFCP PHASE2:Mm9::chr18:20631745..20631746,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p@chr18:20631745..20631746, + |
| 1.65e-69 | FFCP PHASE2:Mm9::chr3:93250018..93250027,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p@chr3:93250018..93250027, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr6:144579044..144579056,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p@chr6:144579044..144579056, - |
| 1.65e-69 | FFCP PHASE2:Mm9::chr5:137057650..137057655,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p@chr5:137057650..137057655, - |
| 1.65e-69 | FFCP PHASE2:Mm9::chr4:135527809..135527823,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p4@Lypla2 |
| 1.65e-69 | FFCP PHASE2:Mm9::chr3:93247552..93247564,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p@chr3:93247552..93247564, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr5:81472249..81472294,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p@chr5:81472249..81472294, + |
| 1.65e-69 | FFCP PHASE2:Mm9::chr4:82496602..82496610,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p8@Zdhhc21 |
| 1.65e-69 | FFCP PHASE2:Mm9::chr6:142831327..142831375,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p@chr6:142831327..142831375, + |
| 1.65e-69 | FFCP PHASE2:Mm9::chr11:95086849..95086855,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p3@ENSMUST00000150818 |
| 1.65e-69 | FFCP PHASE2:Mm9::chr9:67169769..67169780,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p@chr9:67169769..67169780, - |
| 1.65e-69 | FFCP PHASE2:Mm9::chr14:57868950..57868959,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2 | p@chr14:57868950..57868959, + |
