UBERON:0001828: Difference between revisions
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|located_in= | |located_in= | ||
|name=gingiva | |name=gingiva | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0003729;;UBERON:0011595 | |part_of=UBERON:0003729;;UBERON:0011595 |
Latest revision as of 17:20, 12 September 2014
Name: | gingiva | ||
---|---|---|---|
Namespace: | FANTOM | ||
Definition: | "The gingiva, or gums, consists of the mucosal tissue that lies over the alveolar bone. [WP,unvetted]." [Wikipedia:Gingiva] | ||
Xrefs: |
| ||
Synonyms: |
"gum" EXACT [FMA:59762] "gum tissue" EXACT [UBERON:cjm] | ||
Comments: | AO notes: FMA has gingiva of upper and lower jaw | ||
Alt_id: | UBERON:FMA_59762-MA_0000342 | ||
Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0003729(mouth mucosa) |
---|---|
part_of: | UBERON:0003729(mouth mucosa),UBERON:0011595(jaw region) |
Children
part of: | UBERON:0001949 (gingival epithelium),CL:0002552 (fibroblast of gingiva) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11221-116B6 (Gingival epithelial cells, donor1 (GEA11))
- 11222-116B7 (Fibroblast - Gingival, donor4 (GFH2))
- 11237-116D4 (Fibroblast - Gingival, donor1)
- 11302-117B6 (Gingival epithelial cells, donor2 (GEA14))
- 11303-117B7 (Fibroblast - Gingival, donor5 (GFH3))
- 11318-117D4 (Fibroblast - Gingival, donor2)
- 11379-118B2 (Gingival epithelial cells, donor3 (GEA15))
- 11394-118C8 (Fibroblast - Gingival, donor3)
- 11921-125H4 (Fibroblast - Gingival, donor6 (aggressive periodontitis))
- 11922-125H5 (Fibroblast - Gingival, donor6 (control))
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001828 (gingiva), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
P-value | FFCP | Short description |
---|---|---|
3.28e-61 | FFCP PHASE2:Hg19::chr1:75599672..75599682,-#_e06bc67a40ec204c5458e64492b999d1 | p@chr1:75599672..75599682, - |
3.28e-61 | FFCP PHASE1:Hg19::chr1:75599672..75599682,-#_e06bc67a40ec204c5458e64492b999d1 | p@chr1:75599672..75599682, - |
8.7e-48 | FFCP PHASE2:Hg19::chr1:75598362..75598407,-#_0b7f4b2971dd97c6e3c77f7f042c8462 | p1@ENST00000427892, p1@uc001dgp.1 |
8.7e-48 | FFCP PHASE1:Hg19::chr1:75598362..75598407,-#_0b7f4b2971dd97c6e3c77f7f042c8462 | p1@ENST00000427892, p1@uc001dgp.1 |
7.14e-38 | FFCP PHASE2:Hg19::chr4:143470541..143470551,+#_f307e5c2072492201af92f3fdaa54f96 | p@chr4:143470541..143470551, + |
7.14e-38 | FFCP PHASE1:Hg19::chr4:143470541..143470551,+#_f307e5c2072492201af92f3fdaa54f96 | p@chr4:143470541..143470551, + |
6.5e-34 | FFCP PHASE2:Hg19::chr9:94586900..94586909,-#_de15a3ef955487953463da4176c62bd4 | p@chr9:94586900..94586909, - |
6.5e-34 | FFCP PHASE1:Hg19::chr9:94586900..94586909,-#_de15a3ef955487953463da4176c62bd4 | p@chr9:94586900..94586909, - |
9.08e-34 | FFCP PHASE1:Hg19::chr17:73753856..73753871,+#_4f0baad1058ec75f79c6c9ccdf1d89bf | p1@CU674593 |
9.08e-34 | FFCP PHASE1:Hg19::chr1:14465017..14465026,+#_4f0baad1058ec75f79c6c9ccdf1d89bf | p@chr1:14465017..14465026, + |
9.08e-34 | FFCP PHASE2:Hg19::chr1:14465017..14465026,+#_4f0baad1058ec75f79c6c9ccdf1d89bf | p@chr1:14465017..14465026, + |
9.08e-34 | FFCP PHASE2:Hg19::chr17:73753856..73753871,+#_4f0baad1058ec75f79c6c9ccdf1d89bf | p1@CU674593 |
1.96e-33 | FFCP PHASE1:Hg19::chr1:75599683..75599699,-#_d0d8847cfb941cc4f93734b95443a455 | p@chr1:75599683..75599699, - |
1.96e-33 | FFCP PHASE2:Hg19::chr1:75599683..75599699,-#_d0d8847cfb941cc4f93734b95443a455 | p@chr1:75599683..75599699, - |
1.15e-32 | FFCP PHASE2:Hg19::chr8:130798890..130798901,-#_68f216d1b529fa006023b5856df72df7 | p3@GSDMC |
1.15e-32 | FFCP PHASE1:Hg19::chr8:130798890..130798901,-#_68f216d1b529fa006023b5856df72df7 | p3@GSDMC |
1.59e-32 | FFCP PHASE2:Hg19::chr11:93754560..93754567,+#_afadfd0d03fef26a3a655463903aa77e | p@chr11:93754560..93754567, + |
1.59e-32 | FFCP PHASE1:Hg19::chr11:93754560..93754567,+#_afadfd0d03fef26a3a655463903aa77e | p@chr11:93754560..93754567, + |
2.71e-32 | FFCP PHASE1:Hg19::chr10:105791095..105791110,-#_cab5e1fec48c681e0803fbcfb57f55d9 | p@chr10:105791095..105791110, - |
2.71e-32 | FFCP PHASE2:Hg19::chr10:105791095..105791110,-#_cab5e1fec48c681e0803fbcfb57f55d9 | p@chr10:105791095..105791110, - |
1.23e-28 | FFCP PHASE2:Hg19::chr7:40883542..40883550,+#_64e88ea840e213908b571db1efce1842 | p@chr7:40883542..40883550, + |
1.23e-28 | FFCP PHASE2:Hg19::chr1:153533849..153533860,-#_64e88ea840e213908b571db1efce1842 | p@chr1:153533849..153533860, - |
1.23e-28 | FFCP PHASE1:Hg19::chr7:40883542..40883550,+#_64e88ea840e213908b571db1efce1842 | p@chr7:40883542..40883550, + |
1.23e-28 | FFCP PHASE1:Hg19::chr1:153533849..153533860,-#_64e88ea840e213908b571db1efce1842 | p@chr1:153533849..153533860, - |
1.64e-28 | FFCP PHASE2:Hg19::chr3:190252374..190252383,-#_d2220503c4d981152ee890967c6a034c | p@chr3:190252374..190252383, - |
1.64e-28 | FFCP PHASE1:Hg19::chr3:190252374..190252383,-#_d2220503c4d981152ee890967c6a034c | p@chr3:190252374..190252383, - |
2.17e-28 | FFCP PHASE2:Hg19::chr21:44957893..44957903,-#_45514f141087032bc45004442f94e165 | p@chr21:44957893..44957903, - |
2.17e-28 | FFCP PHASE1:Hg19::chr21:44957893..44957903,-#_45514f141087032bc45004442f94e165 | p@chr21:44957893..44957903, - |
2.38e-28 | FFCP PHASE1:Hg19::chr1:241577071..241577081,+#_3df02c2a499e90557a793df990a9193a | p@chr1:241577071..241577081, + |
2.38e-28 | FFCP PHASE2:Hg19::chr1:241577071..241577081,+#_3df02c2a499e90557a793df990a9193a | p@chr1:241577071..241577081, + |
2.87e-28 | FFCP PHASE2:Hg19::chr10:106205489..106205498,+#_af36ac922c644c72fff756dcbabfdc3f | p@chr10:106205489..106205498, + |
2.87e-28 | FFCP PHASE1:Hg19::chr10:106205489..106205498,+#_af36ac922c644c72fff756dcbabfdc3f | p@chr10:106205489..106205498, + |
3.05e-27 | FFCP PHASE2:Hg19::chr2:172953513..172953549,-#_f945c4b1103da77989f72400420bc328 | p@chr2:172953513..172953549, - |
3.05e-27 | FFCP PHASE1:Hg19::chr2:172953513..172953549,-#_f945c4b1103da77989f72400420bc328 | p@chr2:172953513..172953549, - |
3.26e-27 | FFCP PHASE2:Hg19::chr16:70597904..70597915,+#_f449b466d4ad06cbbac000c973bb7f3b | p5@SF3B3 |
3.26e-27 | FFCP PHASE1:Hg19::chr16:70597904..70597915,+#_f449b466d4ad06cbbac000c973bb7f3b | p5@SF3B3 |
1.11e-25 | FFCP PHASE1:Hg19::chr15:40531729..40531738,+#_b34b04948c9fbcaeb8086eb3404a9a34 | p15@PAK6 |
1.11e-25 | FFCP PHASE1:Hg19::chr12:85306433..85306434,-#_b34b04948c9fbcaeb8086eb3404a9a34 | p5@SLC6A15 |
1.11e-25 | FFCP PHASE2:Hg19::chr12:85306433..85306434,-#_b34b04948c9fbcaeb8086eb3404a9a34 | p5@SLC6A15 |
1.11e-25 | FFCP PHASE2:Hg19::chr15:40531729..40531738,+#_b34b04948c9fbcaeb8086eb3404a9a34 | p15@PAK6 |
1.43e-25 | FFCP PHASE2:Hg19::chr9:108870138..108870152,+#_3a4b07cf199ec2cc1e4983529fcb4d18 | p1@uc004bcw.2 |
1.43e-25 | FFCP PHASE1:Hg19::chr9:108870138..108870152,+#_3a4b07cf199ec2cc1e4983529fcb4d18 | p1@uc004bcw.2 |
2.37e-25 | FFCP PHASE2:Hg19::chr16:82671490..82671521,+#_f067dff49403485919210bee44504e0e | p@chr16:82671490..82671521, + |
2.37e-25 | FFCP PHASE1:Hg19::chr16:82671490..82671521,+#_f067dff49403485919210bee44504e0e | p@chr16:82671490..82671521, + |
2.8e-25 | FFCP PHASE2:Hg19::chr1:75600318..75600329,+#_fae9261730ff64db9e1abd3a3da7b080 | p4@LHX8 |
2.8e-25 | FFCP PHASE1:Hg19::chr1:75600318..75600329,+#_fae9261730ff64db9e1abd3a3da7b080 | p4@LHX8 |
1.15e-24 | FFCP PHASE2:Hg19::chr1:75600067..75600094,+#_77d6f01a794e0b342d726f95679c6cbd | p2@LHX8 |
1.15e-24 | FFCP PHASE1:Hg19::chr1:75600067..75600094,+#_77d6f01a794e0b342d726f95679c6cbd | p2@LHX8 |
7.04e-24 | FFCP PHASE2:Hg19::chr1:83982415..83982420,+#_2cc593064411e03927a19398ff4716cf | p@chr1:83982415..83982420, + |
7.04e-24 | FFCP PHASE1:Hg19::chr1:83982415..83982420,+#_2cc593064411e03927a19398ff4716cf | p@chr1:83982415..83982420, + |
9.45e-24 | FFCP PHASE1:Hg19::chr6:1389690..1389700,-#_72713fb12bf89eee892301521d856a91 | p@chr6:1389690..1389700, - |
9.45e-24 | FFCP PHASE2:Hg19::chr6:1389690..1389700,-#_72713fb12bf89eee892301521d856a91 | p@chr6:1389690..1389700, - |
5.97e-23 | FFCP PHASE2:Hg19::chr4:152086796..152086808,-#_6609885980d35c8162869bd6eea85cfc | p18@SH3D19 |
5.97e-23 | FFCP PHASE1:Hg19::chr4:152086796..152086808,-#_6609885980d35c8162869bd6eea85cfc | p18@SH3D19 |
6.43e-23 | FFCP PHASE1:Hg19::chr11:13030878..13030889,+#_9befc5221fbf1e8770b9e099016590cb | p2@RASSF10 |
6.43e-23 | FFCP PHASE2:Hg19::chr11:13030878..13030889,+#_9befc5221fbf1e8770b9e099016590cb | p2@RASSF10 |
7.47e-23 | FFCP PHASE1:Hg19::chr18:20493879..20493891,+#_39d7cd095aebde5c16884e6b8ec693f4 | p@chr18:20493879..20493891, + |
7.47e-23 | FFCP PHASE2:Hg19::chr18:20493879..20493891,+#_39d7cd095aebde5c16884e6b8ec693f4 | p@chr18:20493879..20493891, + |
8.67e-23 | FFCP PHASE1:Hg19::chr8:124850358..124850380,+#_677aa38617cc495bb87cfeda96df3cfb | p@chr8:124850358..124850380, + |
8.67e-23 | FFCP PHASE2:Hg19::chr8:124850358..124850380,+#_677aa38617cc495bb87cfeda96df3cfb | p@chr8:124850358..124850380, + |
1.34e-22 | FFCP PHASE1:Hg19::chr1:75602043..75602093,+#_475dda346052cf0771b6f622714bdd8e | p1@LHX8 |
1.34e-22 | FFCP PHASE2:Hg19::chr1:75602043..75602093,+#_475dda346052cf0771b6f622714bdd8e | p1@LHX8 |
1.83e-21 | FFCP PHASE2:Hg19::chr6:148761357..148761368,+#_48cfd8f54c76f51d7ef518fa506cb340 | p21@SASH1 |
1.83e-21 | FFCP PHASE1:Hg19::chr6:148761357..148761368,+#_48cfd8f54c76f51d7ef518fa506cb340 | p21@SASH1 |
4.5e-21 | FFCP PHASE2:Hg19::chr13:30259768..30259777,+#_a8a6ba8671287ed28e61a40fce7a0c8d | p@chr13:30259768..30259777, + |
4.5e-21 | FFCP PHASE1:Hg19::chr13:30259768..30259777,+#_a8a6ba8671287ed28e61a40fce7a0c8d | p@chr13:30259768..30259777, + |
5.91e-21 | FFCP PHASE2:Hg19::chr5:167247119..167247129,+#_977a3051a5db3c2b1a8205113183bcca | p@chr5:167247119..167247129, + |
5.91e-21 | FFCP PHASE1:Hg19::chr5:167247119..167247129,+#_977a3051a5db3c2b1a8205113183bcca | p@chr5:167247119..167247129, + |
6.32e-21 | FFCP PHASE2:Hg19::chr13:75017232..75017235,+#_080f0b443112f75b26b933729e28ffbf | p@chr13:75017232..75017235, + |
6.32e-21 | FFCP PHASE2:Hg19::chr5:52619638..52619641,+#_080f0b443112f75b26b933729e28ffbf | p@chr5:52619638..52619641, + |
6.32e-21 | FFCP PHASE1:Hg19::chr13:75017232..75017235,+#_080f0b443112f75b26b933729e28ffbf | p@chr13:75017232..75017235, + |
6.32e-21 | FFCP PHASE1:Hg19::chr5:52619638..52619641,+#_080f0b443112f75b26b933729e28ffbf | p@chr5:52619638..52619641, + |
7.35e-21 | FFCP PHASE1:Hg19::chr18:46607960..46607989,-#_74063dfb95883b65967c4761eaeb06ad | p@chr18:46607960..46607989, - |
7.35e-21 | FFCP PHASE2:Hg19::chr18:46607960..46607989,-#_74063dfb95883b65967c4761eaeb06ad | p@chr18:46607960..46607989, - |
8.88e-21 | FFCP PHASE2:Hg19::chr11:129511955..129511961,-#_bfb3a434bcc1c1fa81215b1d8b2695da | p@chr11:129511955..129511961, - |
8.88e-21 | FFCP PHASE1:Hg19::chr11:129511955..129511961,-#_bfb3a434bcc1c1fa81215b1d8b2695da | p@chr11:129511955..129511961, - |
8.98e-21 | FFCP PHASE1:Hg19::chr3:52440350..52440361,-#_ca147a560215e88bba59b6bc30b6adc0 | p@chr3:52440350..52440361, - |
8.98e-21 | FFCP PHASE2:Hg19::chr1:183213228..183213235,+#_ca147a560215e88bba59b6bc30b6adc0 | p@chr1:183213228..183213235, + |
8.98e-21 | FFCP PHASE1:Hg19::chr1:183213228..183213235,+#_ca147a560215e88bba59b6bc30b6adc0 | p@chr1:183213228..183213235, + |
8.98e-21 | FFCP PHASE2:Hg19::chr3:52440350..52440361,-#_ca147a560215e88bba59b6bc30b6adc0 | p@chr3:52440350..52440361, - |
9.92e-21 | FFCP PHASE2:Hg19::chr3:170459091..170459101,-#_46567ee4cd2cdad82c24d9702c533c05 | p4@ENST00000473110 |
9.92e-21 | FFCP PHASE2:Hg19::chr12:115777087..115777091,+#_46567ee4cd2cdad82c24d9702c533c05 | p@chr12:115777087..115777091, + |
9.92e-21 | FFCP PHASE1:Hg19::chr3:170459091..170459101,-#_46567ee4cd2cdad82c24d9702c533c05 | p4@ENST00000473110 |
9.92e-21 | FFCP PHASE1:Hg19::chr12:115777087..115777091,+#_46567ee4cd2cdad82c24d9702c533c05 | p@chr12:115777087..115777091, + |
1.1e-20 | FFCP PHASE2:Hg19::chr8:130798565..130798567,-#_1d98a123da077f82ced214b8ea9b08e4 | p4@GSDMC |
1.1e-20 | FFCP PHASE1:Hg19::chr10:5567644..5567657,+#_1d98a123da077f82ced214b8ea9b08e4 | p@chr10:5567644..5567657, + |
1.1e-20 | FFCP PHASE1:Hg19::chr8:130798565..130798567,-#_1d98a123da077f82ced214b8ea9b08e4 | p4@GSDMC |
1.1e-20 | FFCP PHASE2:Hg19::chr10:5567644..5567657,+#_1d98a123da077f82ced214b8ea9b08e4 | p@chr10:5567644..5567657, + |
1.21e-20 | FFCP PHASE2:Hg19::chr10:106205503..106205518,+#_91591066f78519dee260888447087363 | p@chr10:106205503..106205518, + |
1.21e-20 | FFCP PHASE2:Hg19::chr17:73720330..73720338,+#_91591066f78519dee260888447087363 | p22@ITGB4 |
1.21e-20 | FFCP PHASE1:Hg19::chr10:106205503..106205518,+#_91591066f78519dee260888447087363 | p@chr10:106205503..106205518, + |
1.21e-20 | FFCP PHASE1:Hg19::chr17:73720330..73720338,+#_91591066f78519dee260888447087363 | p22@ITGB4 |
3.09e-19 | FFCP PHASE2:Hg19::chr19:10665857..10665900,-#_f2f5d153ce0fcce3c43723a6ed6b3ef7 | p@chr19:10665857..10665900, - |
3.09e-19 | FFCP PHASE1:Hg19::chr19:10665857..10665900,-#_f2f5d153ce0fcce3c43723a6ed6b3ef7 | p@chr19:10665857..10665900, - |
3.29e-19 | FFCP PHASE2:Hg19::chr11:392625..392628,+#_8a2503314c2f00640f9068b61b9f2ca6 | p13@PKP3 |
3.29e-19 | FFCP PHASE1:Hg19::chr11:392625..392628,+#_8a2503314c2f00640f9068b61b9f2ca6 | p13@PKP3 |
3.73e-19 | FFCP PHASE2:Hg19::chr9:113801625..113801636,-#_2ac93fb0ba9e01edd296261364b4f3a7 | p29@LPAR1 |
3.73e-19 | FFCP PHASE1:Hg19::chr9:113801625..113801636,-#_2ac93fb0ba9e01edd296261364b4f3a7 | p29@LPAR1 |
4.43e-18 | FFCP PHASE2:Hg19::chr4:152086844..152086857,-#_45bb3cf2a3049634655515f71d52ca80 | p11@SH3D19 |
4.43e-18 | FFCP PHASE1:Hg19::chr4:152086844..152086857,-#_45bb3cf2a3049634655515f71d52ca80 | p11@SH3D19 |